PDB Short entry for 4LAY HEADER ISOMERASE 20-JUN-13 4LAY TITLE CRYSTAL STRUCTURE ANALYSIS OF FKBP52, COMPLEX WITH I63 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-260; COMPND 5 SYNONYM: PPIASE FKBP4, 52 KDA FK506-BINDING PROTEIN, 52 KDA FKBP, COMPND 6 FKBP-52, 59 KDA IMMUNOPHILIN, P59, FK506-BINDING PROTEIN 4, FKBP-4, COMPND 7 FKBP59, HSP-BINDING IMMUNOPHILIN, HBI, IMMUNOPHILIN FKBP52, ROTAMASE; COMPND 8 EC: 5.2.1.8; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FKBP4, FKBP52; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) CODON+ RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS FK-506 BINDING DOMAIN, HSP90 COCHAPERONE, IMMUNOPHILIN, PEPTIDYL- KEYWDS 2 PROLYL ISOMERASE, PROTEIN FOLDING, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.BRACHER,C.KOZANY,A.HAEHLE,P.WILD,M.ZACHARIAS,F.HAUSCH REVDAT 4 20-SEP-23 4LAY 1 REMARK SEQADV REVDAT 3 13-NOV-13 4LAY 1 JRNL REVDAT 2 28-AUG-13 4LAY 1 JRNL REVDAT 1 21-AUG-13 4LAY 0 JRNL AUTH A.BRACHER,C.KOZANY,A.HAHLE,P.WILD,M.ZACHARIAS,F.HAUSCH JRNL TITL CRYSTAL STRUCTURES OF THE FREE AND LIGAND-BOUND FK1-FK2 JRNL TITL 2 DOMAIN SEGMENT OF FKBP52 REVEAL A FLEXIBLE INTER-DOMAIN JRNL TITL 3 HINGE. JRNL REF J.MOL.BIOL. V. 425 4134 2013 JRNL REFN ISSN 0022-2836 JRNL PMID 23933011 JRNL DOI 10.1016/J.JMB.2013.07.041 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 31585 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1608 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1710 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 76.15 REMARK 3 BIN R VALUE (WORKING SET) : 0.2550 REMARK 3 BIN FREE R VALUE SET COUNT : 100 REMARK 3 BIN FREE R VALUE : 0.3320 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1840 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 266 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.71 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.77000 REMARK 3 B22 (A**2) : -0.18000 REMARK 3 B33 (A**2) : -0.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.88000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.097 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.098 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.062 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.693 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2038 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2764 ; 1.339 ; 2.000 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 255 ; 6.298 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 95 ;35.370 ;24.526 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 356 ;11.707 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;13.404 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 284 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1595 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 934 ; 0.204 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1409 ; 0.312 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 210 ; 0.150 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 35 ; 0.155 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 26 ; 0.150 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1271 ; 0.750 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1983 ; 1.142 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 880 ; 2.114 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 781 ; 3.189 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 22 A 139 REMARK 3 ORIGIN FOR THE GROUP (A): 20.9217 -4.5082 12.5237 REMARK 3 T TENSOR REMARK 3 T11: -0.0926 T22: -0.1226 REMARK 3 T33: -0.1918 T12: -0.0366 REMARK 3 T13: 0.0106 T23: -0.0022 REMARK 3 L TENSOR REMARK 3 L11: 2.8557 L22: 2.7540 REMARK 3 L33: 2.6995 L12: -0.7029 REMARK 3 L13: -0.7546 L23: -0.2468 REMARK 3 S TENSOR REMARK 3 S11: 0.0952 S12: 0.1310 S13: -0.0154 REMARK 3 S21: 0.1229 S22: -0.1276 S23: -0.0368 REMARK 3 S31: -0.0032 S32: 0.0960 S33: 0.0324 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 140 A 255 REMARK 3 ORIGIN FOR THE GROUP (A): 1.1401 4.1619 36.4360 REMARK 3 T TENSOR REMARK 3 T11: -0.1893 T22: -0.1879 REMARK 3 T33: -0.1503 T12: -0.0180 REMARK 3 T13: 0.0046 T23: -0.0026 REMARK 3 L TENSOR REMARK 3 L11: 2.9399 L22: 2.2965 REMARK 3 L33: 1.2348 L12: -0.4686 REMARK 3 L13: -0.0736 L23: 0.4460 REMARK 3 S TENSOR REMARK 3 S11: -0.0800 S12: -0.0257 S13: -0.0914 REMARK 3 S21: 0.0416 S22: 0.0207 S23: 0.0364 REMARK 3 S31: 0.0868 S32: -0.0676 S33: 0.0593 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 301 A 301 REMARK 3 ORIGIN FOR THE GROUP (A): 18.8336 -13.6033 15.4099 REMARK 3 T TENSOR REMARK 3 T11: 0.0025 T22: -0.1120 REMARK 3 T33: -0.1302 T12: -0.0616 REMARK 3 T13: 0.0350 T23: -0.0363 REMARK 3 L TENSOR REMARK 3 L11: 9.3320 L22: 14.7320 REMARK 3 L33: 39.0556 L12: -10.2357 REMARK 3 L13: -0.3169 L23: -11.3509 REMARK 3 S TENSOR REMARK 3 S11: -0.0601 S12: 0.4930 S13: -0.8698 REMARK 3 S21: -0.3367 S22: 0.1436 S23: 0.4546 REMARK 3 S31: 1.0455 S32: -0.9727 S33: -0.0835 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4LAY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1000080402. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUN-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : DIAMOND(001) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.19 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31620 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 73.928 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : 0.05700 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.30500 REMARK 200 R SYM FOR SHELL (I) : 0.30500 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1Q1C REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG6000, 0.1 M TRIS-HCL, PH 8.0, REMARK 280 4% DMSO, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 21.17550 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ALA A 3 REMARK 465 GLU A 4 REMARK 465 GLU A 5 REMARK 465 MET A 6 REMARK 465 LYS A 7 REMARK 465 ALA A 8 REMARK 465 THR A 9 REMARK 465 GLU A 10 REMARK 465 SER A 11 REMARK 465 GLY A 12 REMARK 465 ALA A 13 REMARK 465 GLN A 14 REMARK 465 SER A 15 REMARK 465 ALA A 16 REMARK 465 PRO A 17 REMARK 465 LEU A 18 REMARK 465 PRO A 19 REMARK 465 MET A 20 REMARK 465 GLU A 21 REMARK 465 LYS A 256 REMARK 465 GLU A 257 REMARK 465 SER A 258 REMARK 465 TRP A 259 REMARK 465 GLU A 260 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 45 CG CD OE1 OE2 REMARK 470 LYS A 74 CG CD CE NZ REMARK 470 LYS A 181 CD CE NZ REMARK 470 LYS A 254 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 537 O HOH A 541 2.13 REMARK 500 O HOH A 549 O HOH A 603 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 112 -113.90 -134.32 REMARK 500 SER A 118 77.79 -150.19 REMARK 500 GLU A 159 -99.15 -92.68 REMARK 500 ALA A 226 -123.38 -118.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE I63 A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1Q1C RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RESIDUES 1-260 OF FKBP52 REMARK 900 RELATED ID: 4LAV RELATED DB: PDB REMARK 900 RELATED ID: 4LAW RELATED DB: PDB REMARK 900 RELATED ID: 4LAX RELATED DB: PDB DBREF 4LAY A 1 260 UNP Q02790 FKBP4_HUMAN 1 260 SEQADV 4LAY MET A -19 UNP Q02790 EXPRESSION TAG SEQADV 4LAY GLY A -18 UNP Q02790 EXPRESSION TAG SEQADV 4LAY SER A -17 UNP Q02790 EXPRESSION TAG SEQADV 4LAY SER A -16 UNP Q02790 EXPRESSION TAG SEQADV 4LAY HIS A -15 UNP Q02790 EXPRESSION TAG SEQADV 4LAY HIS A -14 UNP Q02790 EXPRESSION TAG SEQADV 4LAY HIS A -13 UNP Q02790 EXPRESSION TAG SEQADV 4LAY HIS A -12 UNP Q02790 EXPRESSION TAG SEQADV 4LAY HIS A -11 UNP Q02790 EXPRESSION TAG SEQADV 4LAY HIS A -10 UNP Q02790 EXPRESSION TAG SEQADV 4LAY SER A -9 UNP Q02790 EXPRESSION TAG SEQADV 4LAY SER A -8 UNP Q02790 EXPRESSION TAG SEQADV 4LAY GLY A -7 UNP Q02790 EXPRESSION TAG SEQADV 4LAY LEU A -6 UNP Q02790 EXPRESSION TAG SEQADV 4LAY VAL A -5 UNP Q02790 EXPRESSION TAG SEQADV 4LAY PRO A -4 UNP Q02790 EXPRESSION TAG SEQADV 4LAY ARG A -3 UNP Q02790 EXPRESSION TAG SEQADV 4LAY GLY A -2 UNP Q02790 EXPRESSION TAG SEQADV 4LAY SER A -1 UNP Q02790 EXPRESSION TAG SEQADV 4LAY HIS A 0 UNP Q02790 EXPRESSION TAG SEQRES 1 A 280 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 280 LEU VAL PRO ARG GLY SER HIS MET THR ALA GLU GLU MET SEQRES 3 A 280 LYS ALA THR GLU SER GLY ALA GLN SER ALA PRO LEU PRO SEQRES 4 A 280 MET GLU GLY VAL ASP ILE SER PRO LYS GLN ASP GLU GLY SEQRES 5 A 280 VAL LEU LYS VAL ILE LYS ARG GLU GLY THR GLY THR GLU SEQRES 6 A 280 MET PRO MET ILE GLY ASP ARG VAL PHE VAL HIS TYR THR SEQRES 7 A 280 GLY TRP LEU LEU ASP GLY THR LYS PHE ASP SER SER LEU SEQRES 8 A 280 ASP ARG LYS ASP LYS PHE SER PHE ASP LEU GLY LYS GLY SEQRES 9 A 280 GLU VAL ILE LYS ALA TRP ASP ILE ALA ILE ALA THR MET SEQRES 10 A 280 LYS VAL GLY GLU VAL CYS HIS ILE THR CYS LYS PRO GLU SEQRES 11 A 280 TYR ALA TYR GLY SER ALA GLY SER PRO PRO LYS ILE PRO SEQRES 12 A 280 PRO ASN ALA THR LEU VAL PHE GLU VAL GLU LEU PHE GLU SEQRES 13 A 280 PHE LYS GLY GLU ASP LEU THR GLU GLU GLU ASP GLY GLY SEQRES 14 A 280 ILE ILE ARG ARG ILE GLN THR ARG GLY GLU GLY TYR ALA SEQRES 15 A 280 LYS PRO ASN GLU GLY ALA ILE VAL GLU VAL ALA LEU GLU SEQRES 16 A 280 GLY TYR TYR LYS ASP LYS LEU PHE ASP GLN ARG GLU LEU SEQRES 17 A 280 ARG PHE GLU ILE GLY GLU GLY GLU ASN LEU ASP LEU PRO SEQRES 18 A 280 TYR GLY LEU GLU ARG ALA ILE GLN ARG MET GLU LYS GLY SEQRES 19 A 280 GLU HIS SER ILE VAL TYR LEU LYS PRO SER TYR ALA PHE SEQRES 20 A 280 GLY SER VAL GLY LYS GLU LYS PHE GLN ILE PRO PRO ASN SEQRES 21 A 280 ALA GLU LEU LYS TYR GLU LEU HIS LEU LYS SER PHE GLU SEQRES 22 A 280 LYS ALA LYS GLU SER TRP GLU HET I63 A 301 42 HETNAM I63 {3-[(1R)-3-(3,4-DIMETHOXYPHENYL)-1-({[(2S)-1-(3,3- HETNAM 2 I63 DIMETHYL-2-OXOPENTANOYL)PIPERIDIN-2-YL]CARBONYL}OXY) HETNAM 3 I63 PROPYL]PHENOXY}ACETIC ACID FORMUL 2 I63 C32 H41 N O9 FORMUL 3 HOH *266(H2 O) HELIX 1 1 LEU A 71 ARG A 73 5 3 HELIX 2 2 ILE A 87 ALA A 95 1 9 HELIX 3 3 PRO A 109 ALA A 112 5 4 HELIX 4 4 GLU A 194 ASP A 199 5 6 HELIX 5 5 PRO A 201 GLN A 209 1 9 HELIX 6 6 PRO A 223 ALA A 226 5 4 HELIX 7 7 LYS A 232 GLN A 236 5 5 SHEET 1 A 6 VAL A 23 ASP A 24 0 SHEET 2 A 6 VAL A 33 ARG A 39 -1 O LYS A 35 N VAL A 23 SHEET 3 A 6 VAL A 102 CYS A 107 -1 O HIS A 104 N VAL A 36 SHEET 4 A 6 LEU A 128 LYS A 138 -1 O LEU A 128 N CYS A 107 SHEET 5 A 6 ARG A 52 LEU A 61 -1 N TRP A 60 O VAL A 129 SHEET 6 A 6 LYS A 66 SER A 69 -1 O ASP A 68 N GLY A 59 SHEET 1 B 6 VAL A 23 ASP A 24 0 SHEET 2 B 6 VAL A 33 ARG A 39 -1 O LYS A 35 N VAL A 23 SHEET 3 B 6 VAL A 102 CYS A 107 -1 O HIS A 104 N VAL A 36 SHEET 4 B 6 LEU A 128 LYS A 138 -1 O LEU A 128 N CYS A 107 SHEET 5 B 6 ARG A 52 LEU A 61 -1 N TRP A 60 O VAL A 129 SHEET 6 B 6 PHE A 77 ASP A 80 -1 O PHE A 77 N VAL A 55 SHEET 1 C 6 GLU A 140 ASP A 141 0 SHEET 2 C 6 ILE A 150 THR A 156 -1 O ARG A 152 N GLU A 140 SHEET 3 C 6 HIS A 216 LEU A 221 -1 O TYR A 220 N ILE A 151 SHEET 4 C 6 LEU A 243 GLU A 253 -1 O TYR A 245 N VAL A 219 SHEET 5 C 6 ILE A 169 TYR A 178 -1 N TYR A 177 O LYS A 244 SHEET 6 C 6 LYS A 181 GLU A 191 -1 O PHE A 183 N GLY A 176 CISPEP 1 PRO A 119 PRO A 120 0 -0.94 SITE 1 AC1 15 TYR A 57 PHE A 67 ASP A 68 PHE A 77 SITE 2 AC1 15 GLY A 84 GLU A 85 VAL A 86 ILE A 87 SITE 3 AC1 15 TRP A 90 TYR A 113 ILE A 122 PHE A 130 SITE 4 AC1 15 HOH A 416 HOH A 608 HOH A 665 CRYST1 47.592 42.351 76.811 90.00 105.75 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021012 0.000000 0.005925 0.00000 SCALE2 0.000000 0.023612 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013527 0.00000