PDB Short entry for 4LEP HEADER MEMBRANE PROTEIN, TRANPORT PROTEIN 26-JUN-13 4LEP TITLE STRUCTURAL INSIGHTS INTO SUBSTRATE RECOGNITION IN PROTON DEPENDENT TITLE 2 OLIGOPEPTIDE TRANSPORTERS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTON:OLIGOPEPTIDE SYMPORTER POT FAMILY; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHEWANELLA ONEIDENSIS; SOURCE 3 ORGANISM_TAXID: 211586; SOURCE 4 STRAIN: MR-1; SOURCE 5 GENE: SO_1277; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MFS SUPERFAMILY, PEPTIDE TRANSPORTER, MEMBRANE PROTEIN, TRANPORT KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR F.GUETTOU,E.M.QUISTGAARD,L.TRESAUGUES,P.MOBERG,C.JEGERSCHOLD,L.ZHU, AUTHOR 2 A.J.JONG,P.NORDLUND,C.LOW REVDAT 4 28-FEB-24 4LEP 1 REMARK SEQADV REVDAT 3 23-OCT-13 4LEP 1 JRNL REVDAT 2 07-AUG-13 4LEP 1 JRNL REVDAT 1 10-JUL-13 4LEP 0 JRNL AUTH F.GUETTOU,E.M.QUISTGAARD,L.TRESAUGUES,P.MOBERG, JRNL AUTH 2 C.JEGERSCHOLD,L.ZHU,A.J.JONG,P.NORDLUND,C.LOW JRNL TITL STRUCTURAL INSIGHTS INTO SUBSTRATE RECOGNITION IN JRNL TITL 2 PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORTERS. JRNL REF EMBO REP. V. 14 804 2013 JRNL REFN ISSN 1469-221X JRNL PMID 23867627 JRNL DOI 10.1038/EMBOR.2013.107 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.86 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.700 REMARK 3 COMPLETENESS FOR RANGE (%) : 77.6 REMARK 3 NUMBER OF REFLECTIONS : 24500 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.277 REMARK 3 R VALUE (WORKING SET) : 0.275 REMARK 3 FREE R VALUE : 0.325 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1250 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.8631 - 6.6355 1.00 3512 182 0.2508 0.3172 REMARK 3 2 6.6355 - 5.2762 1.00 3354 183 0.2930 0.3058 REMARK 3 3 5.2762 - 4.6120 1.00 3347 189 0.2328 0.2941 REMARK 3 4 4.6120 - 4.1916 1.00 3300 174 0.2519 0.2912 REMARK 3 5 4.1916 - 3.8919 0.96 3204 165 0.2977 0.3816 REMARK 3 6 3.8919 - 3.6628 0.79 2598 140 0.3103 0.3363 REMARK 3 7 3.6628 - 3.4797 0.60 1989 100 0.3538 0.3921 REMARK 3 8 3.4797 - 3.3284 0.41 1338 76 0.3805 0.3927 REMARK 3 9 3.3284 - 3.2004 0.19 608 41 0.3807 0.4095 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.550 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 37.070 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 82.21 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 7039 REMARK 3 ANGLE : 1.337 9585 REMARK 3 CHIRALITY : 0.087 1131 REMARK 3 PLANARITY : 0.008 1164 REMARK 3 DIHEDRAL : 15.970 2329 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' REMARK 3 ORIGIN FOR THE GROUP (A): 16.1794 37.6323 234.5730 REMARK 3 T TENSOR REMARK 3 T11: 0.5741 T22: 0.7468 REMARK 3 T33: 0.7390 T12: 0.1017 REMARK 3 T13: 0.3546 T23: 0.0055 REMARK 3 L TENSOR REMARK 3 L11: 1.4146 L22: 4.5648 REMARK 3 L33: 2.6855 L12: 0.0658 REMARK 3 L13: -0.8242 L23: -0.2115 REMARK 3 S TENSOR REMARK 3 S11: 0.1223 S12: 0.0997 S13: 0.0321 REMARK 3 S21: -0.6367 S22: -0.0579 S23: -0.5319 REMARK 3 S31: 0.0907 S32: 0.5127 S33: -0.0949 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' REMARK 3 ORIGIN FOR THE GROUP (A): 2.1633 -9.6145 229.7485 REMARK 3 T TENSOR REMARK 3 T11: 0.6481 T22: 0.6059 REMARK 3 T33: 0.5425 T12: 0.1365 REMARK 3 T13: 0.1841 T23: 0.0607 REMARK 3 L TENSOR REMARK 3 L11: 0.9986 L22: 5.5518 REMARK 3 L33: 4.1415 L12: 0.3853 REMARK 3 L13: 0.1622 L23: 0.3801 REMARK 3 S TENSOR REMARK 3 S11: 0.1876 S12: 0.2372 S13: 0.1467 REMARK 3 S21: -0.8131 S22: -0.1188 S23: -0.0922 REMARK 3 S31: -0.1472 S32: -0.1259 S33: -0.0661 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4LEP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-JUN-13. REMARK 100 THE DEPOSITION ID IS D_1000080535. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : CHANNEL CUT SI CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS, ANISOTROPY SERVER REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24514 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 29.860 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.700 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 77.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 15.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.22100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40% PEG 300, 0.1 M PHOSPHATE CITRATE, REMARK 280 0.12 M ZNCL2, 3% TRIMETHYLAMINE N-OXIDE DEHYDRATE PH 11, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 293.15K, PH 4.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 42.12000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 102.75500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 53.86500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 102.75500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 42.12000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 53.86500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -59.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 LEU A 3 REMARK 465 GLY A 4 REMARK 465 THR A 5 REMARK 465 ASN A 6 REMARK 465 GLN A 7 REMARK 465 VAL A 8 REMARK 465 SER A 208 REMARK 465 GLU A 209 REMARK 465 PRO A 210 REMARK 465 ASP A 211 REMARK 465 THR A 212 REMARK 465 ARG A 213 REMARK 465 PRO A 214 REMARK 465 THR A 265 REMARK 465 SER A 266 REMARK 465 GLU A 267 REMARK 465 GLN A 311 REMARK 465 VAL A 312 REMARK 465 PHE A 313 REMARK 465 GLY A 314 REMARK 465 THR A 315 REMARK 465 HIS A 316 REMARK 465 LEU A 317 REMARK 465 ALA A 347 REMARK 465 GLY A 348 REMARK 465 ARG A 349 REMARK 465 ASN A 350 REMARK 465 ASN A 351 REMARK 465 LYS A 352 REMARK 465 VAL A 417 REMARK 465 PRO A 418 REMARK 465 ALA A 419 REMARK 465 ARG A 420 REMARK 465 MET A 421 REMARK 465 GLY A 422 REMARK 465 GLU A 493 REMARK 465 SER A 494 REMARK 465 HIS A 495 REMARK 465 HIS A 496 REMARK 465 ALA A 497 REMARK 465 HIS A 498 REMARK 465 SER A 499 REMARK 465 SER A 500 REMARK 465 ILE A 501 REMARK 465 GLU A 502 REMARK 465 ASN A 503 REMARK 465 ASN A 504 REMARK 465 ALA A 505 REMARK 465 ALA A 506 REMARK 465 ALA A 507 REMARK 465 SER A 508 REMARK 465 LEU A 509 REMARK 465 ARG A 510 REMARK 465 ASP A 511 REMARK 465 VAL A 512 REMARK 465 LYS A 513 REMARK 465 ALA A 514 REMARK 465 GLU A 515 REMARK 465 GLN A 516 REMARK 465 ALA A 517 REMARK 465 GLU A 518 REMARK 465 ASN A 519 REMARK 465 LEU A 520 REMARK 465 TYR A 521 REMARK 465 PHE A 522 REMARK 465 GLN A 523 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 LEU B 3 REMARK 465 GLY B 4 REMARK 465 THR B 5 REMARK 465 ASN B 6 REMARK 465 GLN B 7 REMARK 465 VAL B 8 REMARK 465 SER B 9 REMARK 465 GLU B 209 REMARK 465 PRO B 210 REMARK 465 ASP B 211 REMARK 465 THR B 212 REMARK 465 ARG B 213 REMARK 465 SER B 266 REMARK 465 GLU B 267 REMARK 465 GLN B 311 REMARK 465 VAL B 312 REMARK 465 PHE B 313 REMARK 465 GLY B 314 REMARK 465 THR B 315 REMARK 465 HIS B 316 REMARK 465 TYR B 344 REMARK 465 SER B 345 REMARK 465 TRP B 346 REMARK 465 ALA B 347 REMARK 465 GLY B 348 REMARK 465 ARG B 349 REMARK 465 ASN B 350 REMARK 465 ASN B 351 REMARK 465 LYS B 352 REMARK 465 ASP B 353 REMARK 465 PHE B 354 REMARK 465 TYR B 416 REMARK 465 VAL B 417 REMARK 465 PRO B 418 REMARK 465 ALA B 419 REMARK 465 ARG B 420 REMARK 465 MET B 421 REMARK 465 THR B 492 REMARK 465 GLU B 493 REMARK 465 SER B 494 REMARK 465 HIS B 495 REMARK 465 HIS B 496 REMARK 465 ALA B 497 REMARK 465 HIS B 498 REMARK 465 SER B 499 REMARK 465 SER B 500 REMARK 465 ILE B 501 REMARK 465 GLU B 502 REMARK 465 ASN B 503 REMARK 465 ASN B 504 REMARK 465 ALA B 505 REMARK 465 ALA B 506 REMARK 465 ALA B 507 REMARK 465 SER B 508 REMARK 465 LEU B 509 REMARK 465 ARG B 510 REMARK 465 ASP B 511 REMARK 465 VAL B 512 REMARK 465 LYS B 513 REMARK 465 ALA B 514 REMARK 465 GLU B 515 REMARK 465 GLN B 516 REMARK 465 ALA B 517 REMARK 465 GLU B 518 REMARK 465 ASN B 519 REMARK 465 LEU B 520 REMARK 465 TYR B 521 REMARK 465 PHE B 522 REMARK 465 GLN B 523 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 132 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 133 CG CD OE1 OE2 REMARK 470 ASP A 135 CG OD1 OD2 REMARK 470 ASP A 136 CG OD1 OD2 REMARK 470 SER A 137 OG REMARK 470 TYR A 172 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASN A 174 CG OD1 ND2 REMARK 470 GLU A 175 CG CD OE1 OE2 REMARK 470 PHE A 310 CG CD1 CD2 CE1 CE2 CZ REMARK 470 TRP A 318 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 318 CZ3 CH2 REMARK 470 THR A 319 OG1 CG2 REMARK 470 SER A 343 OG REMARK 470 TYR A 344 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 SER A 345 OG REMARK 470 TRP A 346 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 346 CZ3 CH2 REMARK 470 ASP A 353 CG OD1 OD2 REMARK 470 PHE A 354 CG CD1 CD2 CE1 CE2 CZ REMARK 470 SER A 355 OG REMARK 470 TYR A 416 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU B 133 CG CD OE1 OE2 REMARK 470 ASP B 135 CG OD1 OD2 REMARK 470 ASP B 136 CG OD1 OD2 REMARK 470 SER B 137 OG REMARK 470 LYS B 138 CG CD CE NZ REMARK 470 TYR B 172 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASN B 174 CG OD1 ND2 REMARK 470 GLU B 175 CG CD OE1 OE2 REMARK 470 PHE B 176 CG CD1 CD2 CE1 CE2 CZ REMARK 470 HIS B 200 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 201 CG CD CE NZ REMARK 470 SER B 202 OG REMARK 470 ASN B 205 CG OD1 ND2 REMARK 470 PHE B 310 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU B 317 CG CD1 CD2 REMARK 470 TRP B 318 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 318 CZ3 CH2 REMARK 470 TRP B 320 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 320 CZ3 CH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 101 CE2 PHE A 105 1.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 76 -160.31 -114.65 REMARK 500 PRO A 99 -105.57 -34.12 REMARK 500 GLU A 101 -161.60 55.60 REMARK 500 LYS A 130 -80.69 -77.41 REMARK 500 TYR A 132 65.90 61.53 REMARK 500 ASN A 174 -51.49 71.35 REMARK 500 ASN A 195 -83.83 -118.00 REMARK 500 ALA A 204 -133.51 -119.98 REMARK 500 ASN A 205 -64.85 -104.26 REMARK 500 THR A 296 -98.81 -112.09 REMARK 500 ASN A 305 73.39 -163.69 REMARK 500 THR A 319 141.51 68.71 REMARK 500 ILE A 356 35.54 -91.33 REMARK 500 ALA A 381 67.55 60.64 REMARK 500 LYS A 385 101.77 -175.11 REMARK 500 THR A 386 -118.42 -124.36 REMARK 500 SER A 387 73.47 60.58 REMARK 500 VAL A 405 39.34 -94.26 REMARK 500 ALA A 414 88.32 -67.96 REMARK 500 THR B 11 -41.41 65.67 REMARK 500 ILE B 75 -61.39 -93.43 REMARK 500 LEU B 76 -162.22 -113.36 REMARK 500 PRO B 99 -94.83 -51.47 REMARK 500 ASN B 102 13.25 52.11 REMARK 500 THR B 103 -35.96 69.47 REMARK 500 PHE B 120 -60.32 -96.15 REMARK 500 LYS B 130 -81.65 -78.59 REMARK 500 TYR B 132 71.93 58.96 REMARK 500 ASP B 135 64.41 60.91 REMARK 500 ASN B 174 -53.30 70.43 REMARK 500 ASN B 195 -84.71 -117.34 REMARK 500 ALA B 204 -120.79 -124.91 REMARK 500 TYR B 206 -147.12 66.60 REMARK 500 THR B 296 -101.64 -109.36 REMARK 500 ASN B 305 72.10 -164.51 REMARK 500 TRP B 318 -178.11 59.68 REMARK 500 TRP B 320 29.20 -144.40 REMARK 500 LYS B 385 101.71 -175.07 REMARK 500 THR B 386 -117.85 -124.99 REMARK 500 SER B 387 74.17 59.63 REMARK 500 VAL B 405 40.07 -93.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AFS A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AFS B 601 DBREF 4LEP A 1 516 UNP Q8EHE6 Q8EHE6_SHEON 1 516 DBREF 4LEP B 1 516 UNP Q8EHE6 Q8EHE6_SHEON 1 516 SEQADV 4LEP ALA A 517 UNP Q8EHE6 EXPRESSION TAG SEQADV 4LEP GLU A 518 UNP Q8EHE6 EXPRESSION TAG SEQADV 4LEP ASN A 519 UNP Q8EHE6 EXPRESSION TAG SEQADV 4LEP LEU A 520 UNP Q8EHE6 EXPRESSION TAG SEQADV 4LEP TYR A 521 UNP Q8EHE6 EXPRESSION TAG SEQADV 4LEP PHE A 522 UNP Q8EHE6 EXPRESSION TAG SEQADV 4LEP GLN A 523 UNP Q8EHE6 EXPRESSION TAG SEQADV 4LEP ALA B 517 UNP Q8EHE6 EXPRESSION TAG SEQADV 4LEP GLU B 518 UNP Q8EHE6 EXPRESSION TAG SEQADV 4LEP ASN B 519 UNP Q8EHE6 EXPRESSION TAG SEQADV 4LEP LEU B 520 UNP Q8EHE6 EXPRESSION TAG SEQADV 4LEP TYR B 521 UNP Q8EHE6 EXPRESSION TAG SEQADV 4LEP PHE B 522 UNP Q8EHE6 EXPRESSION TAG SEQADV 4LEP GLN B 523 UNP Q8EHE6 EXPRESSION TAG SEQRES 1 A 523 MET THR LEU GLY THR ASN GLN VAL SER LYS THR HIS SER SEQRES 2 A 523 PHE MET THR VAL SER LEU ILE GLU LEU TRP GLU ARG PHE SEQRES 3 A 523 GLY TYR TYR GLY MET GLN ALA LEU ILE VAL TYR PHE MET SEQRES 4 A 523 VAL GLN ARG LEU GLY PHE ASP ASP SER ARG ALA ASN LEU SEQRES 5 A 523 VAL TRP SER ALA CYS ALA ALA LEU ILE TYR VAL SER PRO SEQRES 6 A 523 ALA ILE GLY GLY TRP VAL GLY ASP LYS ILE LEU GLY THR SEQRES 7 A 523 LYS ARG THR MET LEU LEU GLY ALA GLY ILE LEU SER VAL SEQRES 8 A 523 GLY TYR ALA LEU MET THR VAL PRO THR GLU ASN THR TRP SEQRES 9 A 523 PHE MET PHE SER ALA LEU GLY VAL ILE VAL VAL GLY ASN SEQRES 10 A 523 GLY LEU PHE LYS PRO ASN ALA GLY ASN LEU VAL ARG LYS SEQRES 11 A 523 ILE TYR GLU GLY ASP ASP SER LYS ILE ASP SER ALA PHE SEQRES 12 A 523 THR ILE TYR TYR MET ALA VAL ASN VAL GLY SER THR PHE SEQRES 13 A 523 SER MET LEU LEU THR PRO TRP ILE LYS ASP TYR VAL ASN SEQRES 14 A 523 ALA GLN TYR GLY ASN GLU PHE GLY TRP HIS ALA ALA PHE SEQRES 15 A 523 ALA VAL CYS CYS VAL GLY ILE LEU VAL GLY LEU GLY ASN SEQRES 16 A 523 TYR ALA LEU MET HIS LYS SER LEU ALA ASN TYR GLY SER SEQRES 17 A 523 GLU PRO ASP THR ARG PRO VAL ASN LYS LYS SER LEU ALA SEQRES 18 A 523 ILE VAL LEU ALA LEU ALA ALA LEU SER VAL VAL ALA SER SEQRES 19 A 523 ALA ILE ILE LEU GLU TYR GLU ASP VAL ALA ARG VAL PHE SEQRES 20 A 523 VAL TYR ALA ALA GLY VAL ALA VAL LEU GLY ILE PHE PHE SEQRES 21 A 523 HIS LEU ILE ARG THR SER GLU PRO SER GLU ARG ALA GLY SEQRES 22 A 523 LEU ILE ALA ALA LEU ILE LEU THR VAL GLN THR VAL PHE SEQRES 23 A 523 PHE PHE ILE PHE TYR GLN GLN MET SER THR SER LEU ALA SEQRES 24 A 523 LEU PHE ALA LEU ARG ASN VAL ASP TRP ASP PHE GLN VAL SEQRES 25 A 523 PHE GLY THR HIS LEU TRP THR TRP SER PRO ALA GLN PHE SEQRES 26 A 523 GLN ALA LEU ASN PRO ILE TRP ILE MET VAL LEU SER PRO SEQRES 27 A 523 VAL LEU ALA TRP SER TYR SER TRP ALA GLY ARG ASN ASN SEQRES 28 A 523 LYS ASP PHE SER ILE ALA ALA LYS PHE ALA LEU GLY PHE SEQRES 29 A 523 ALA VAL VAL ALA ILE GLY PHE PHE ILE TYR GLY PHE ALA SEQRES 30 A 523 GLY GLN PHE ALA VAL ASN GLY LYS THR SER SER TRP VAL SEQRES 31 A 523 MET ILE TRP GLY TYR ALA SER TYR SER LEU GLY GLU LEU SEQRES 32 A 523 LEU VAL SER GLY LEU GLY LEU ALA MET ILE ALA ARG TYR SEQRES 33 A 523 VAL PRO ALA ARG MET GLY GLY PHE MET MET GLY ALA TYR SEQRES 34 A 523 PHE VAL ALA SER GLY ILE SER GLN TYR LEU GLY GLY VAL SEQRES 35 A 523 VAL ALA ASN PHE ALA SER VAL PRO GLN ASP LEU VAL ASP SEQRES 36 A 523 PRO LEU GLN THR LEU PRO VAL TYR THR ASN LEU PHE ASN SEQRES 37 A 523 LYS LEU GLY VAL ALA ALA VAL VAL CYS THR ILE ILE ALA SEQRES 38 A 523 LEU ALA VAL LEU PRO LEU MET ARG ARG LEU THR GLU SER SEQRES 39 A 523 HIS HIS ALA HIS SER SER ILE GLU ASN ASN ALA ALA ALA SEQRES 40 A 523 SER LEU ARG ASP VAL LYS ALA GLU GLN ALA GLU ASN LEU SEQRES 41 A 523 TYR PHE GLN SEQRES 1 B 523 MET THR LEU GLY THR ASN GLN VAL SER LYS THR HIS SER SEQRES 2 B 523 PHE MET THR VAL SER LEU ILE GLU LEU TRP GLU ARG PHE SEQRES 3 B 523 GLY TYR TYR GLY MET GLN ALA LEU ILE VAL TYR PHE MET SEQRES 4 B 523 VAL GLN ARG LEU GLY PHE ASP ASP SER ARG ALA ASN LEU SEQRES 5 B 523 VAL TRP SER ALA CYS ALA ALA LEU ILE TYR VAL SER PRO SEQRES 6 B 523 ALA ILE GLY GLY TRP VAL GLY ASP LYS ILE LEU GLY THR SEQRES 7 B 523 LYS ARG THR MET LEU LEU GLY ALA GLY ILE LEU SER VAL SEQRES 8 B 523 GLY TYR ALA LEU MET THR VAL PRO THR GLU ASN THR TRP SEQRES 9 B 523 PHE MET PHE SER ALA LEU GLY VAL ILE VAL VAL GLY ASN SEQRES 10 B 523 GLY LEU PHE LYS PRO ASN ALA GLY ASN LEU VAL ARG LYS SEQRES 11 B 523 ILE TYR GLU GLY ASP ASP SER LYS ILE ASP SER ALA PHE SEQRES 12 B 523 THR ILE TYR TYR MET ALA VAL ASN VAL GLY SER THR PHE SEQRES 13 B 523 SER MET LEU LEU THR PRO TRP ILE LYS ASP TYR VAL ASN SEQRES 14 B 523 ALA GLN TYR GLY ASN GLU PHE GLY TRP HIS ALA ALA PHE SEQRES 15 B 523 ALA VAL CYS CYS VAL GLY ILE LEU VAL GLY LEU GLY ASN SEQRES 16 B 523 TYR ALA LEU MET HIS LYS SER LEU ALA ASN TYR GLY SER SEQRES 17 B 523 GLU PRO ASP THR ARG PRO VAL ASN LYS LYS SER LEU ALA SEQRES 18 B 523 ILE VAL LEU ALA LEU ALA ALA LEU SER VAL VAL ALA SER SEQRES 19 B 523 ALA ILE ILE LEU GLU TYR GLU ASP VAL ALA ARG VAL PHE SEQRES 20 B 523 VAL TYR ALA ALA GLY VAL ALA VAL LEU GLY ILE PHE PHE SEQRES 21 B 523 HIS LEU ILE ARG THR SER GLU PRO SER GLU ARG ALA GLY SEQRES 22 B 523 LEU ILE ALA ALA LEU ILE LEU THR VAL GLN THR VAL PHE SEQRES 23 B 523 PHE PHE ILE PHE TYR GLN GLN MET SER THR SER LEU ALA SEQRES 24 B 523 LEU PHE ALA LEU ARG ASN VAL ASP TRP ASP PHE GLN VAL SEQRES 25 B 523 PHE GLY THR HIS LEU TRP THR TRP SER PRO ALA GLN PHE SEQRES 26 B 523 GLN ALA LEU ASN PRO ILE TRP ILE MET VAL LEU SER PRO SEQRES 27 B 523 VAL LEU ALA TRP SER TYR SER TRP ALA GLY ARG ASN ASN SEQRES 28 B 523 LYS ASP PHE SER ILE ALA ALA LYS PHE ALA LEU GLY PHE SEQRES 29 B 523 ALA VAL VAL ALA ILE GLY PHE PHE ILE TYR GLY PHE ALA SEQRES 30 B 523 GLY GLN PHE ALA VAL ASN GLY LYS THR SER SER TRP VAL SEQRES 31 B 523 MET ILE TRP GLY TYR ALA SER TYR SER LEU GLY GLU LEU SEQRES 32 B 523 LEU VAL SER GLY LEU GLY LEU ALA MET ILE ALA ARG TYR SEQRES 33 B 523 VAL PRO ALA ARG MET GLY GLY PHE MET MET GLY ALA TYR SEQRES 34 B 523 PHE VAL ALA SER GLY ILE SER GLN TYR LEU GLY GLY VAL SEQRES 35 B 523 VAL ALA ASN PHE ALA SER VAL PRO GLN ASP LEU VAL ASP SEQRES 36 B 523 PRO LEU GLN THR LEU PRO VAL TYR THR ASN LEU PHE ASN SEQRES 37 B 523 LYS LEU GLY VAL ALA ALA VAL VAL CYS THR ILE ILE ALA SEQRES 38 B 523 LEU ALA VAL LEU PRO LEU MET ARG ARG LEU THR GLU SER SEQRES 39 B 523 HIS HIS ALA HIS SER SER ILE GLU ASN ASN ALA ALA ALA SEQRES 40 B 523 SER LEU ARG ASP VAL LYS ALA GLU GLN ALA GLU ASN LEU SEQRES 41 B 523 TYR PHE GLN HET AFS A 601 12 HET ZN A 602 1 HET AFS B 601 12 HETNAM AFS N-[(1R)-1-PHOSPHONOETHYL]-L-ALANINAMIDE HETNAM ZN ZINC ION HETSYN AFS ALAFOSFALIN FORMUL 3 AFS 2(C5 H13 N2 O4 P) FORMUL 4 ZN ZN 2+ HELIX 1 1 SER A 9 ARG A 42 1 34 HELIX 2 2 ASP A 46 SER A 64 1 19 HELIX 3 3 SER A 64 ILE A 75 1 12 HELIX 4 4 GLY A 77 LEU A 95 1 19 HELIX 5 5 MET A 96 VAL A 98 5 3 HELIX 6 6 THR A 103 ILE A 131 1 29 HELIX 7 7 SER A 137 TYR A 172 1 36 HELIX 8 8 GLY A 177 LEU A 193 1 17 HELIX 9 9 ASN A 195 HIS A 200 1 6 HELIX 10 10 ASN A 216 TYR A 240 1 25 HELIX 11 11 TYR A 240 ARG A 264 1 25 HELIX 12 12 GLU A 270 MET A 294 1 25 HELIX 13 13 THR A 296 ARG A 304 1 9 HELIX 14 14 SER A 321 GLN A 326 5 6 HELIX 15 15 ALA A 327 TRP A 342 1 16 HELIX 16 16 ALA A 357 PHE A 376 1 20 HELIX 17 17 SER A 388 VAL A 405 1 18 HELIX 18 18 GLY A 409 ALA A 414 1 6 HELIX 19 19 GLY A 427 ASN A 445 1 19 HELIX 20 20 PHE A 446 SER A 448 5 3 HELIX 21 21 ASP A 455 VAL A 484 1 30 HELIX 22 22 VAL A 484 THR A 492 1 9 HELIX 23 23 THR B 11 ARG B 42 1 32 HELIX 24 24 ASP B 46 SER B 64 1 19 HELIX 25 25 SER B 64 ILE B 75 1 12 HELIX 26 26 GLY B 77 MET B 96 1 20 HELIX 27 27 THR B 103 ILE B 131 1 29 HELIX 28 28 SER B 137 TYR B 172 1 36 HELIX 29 29 GLY B 177 LEU B 193 1 17 HELIX 30 30 ASN B 195 HIS B 200 1 6 HELIX 31 31 ASN B 216 TYR B 240 1 25 HELIX 32 32 TYR B 240 ILE B 263 1 24 HELIX 33 33 GLU B 270 GLN B 293 1 24 HELIX 34 34 THR B 296 ARG B 304 1 9 HELIX 35 35 PRO B 322 GLN B 326 5 5 HELIX 36 36 ALA B 327 SER B 343 1 17 HELIX 37 37 ALA B 357 PHE B 376 1 20 HELIX 38 38 SER B 388 VAL B 405 1 18 HELIX 39 39 GLY B 409 ALA B 414 1 6 HELIX 40 40 GLY B 427 ASN B 445 1 19 HELIX 41 41 PHE B 446 SER B 448 5 3 HELIX 42 42 ASP B 455 VAL B 484 1 30 HELIX 43 43 VAL B 484 LEU B 491 1 8 LINK ND2 ASN A 468 ZN ZN A 602 1555 1555 2.63 CISPEP 1 TYR A 132 GLU A 133 0 1.49 CISPEP 2 GLU A 175 PHE A 176 0 2.85 CISPEP 3 THR A 319 TRP A 320 0 18.31 CISPEP 4 TYR B 132 GLU B 133 0 1.32 CISPEP 5 GLU B 175 PHE B 176 0 3.01 SITE 1 AC1 9 ARG A 25 TYR A 29 TYR A 147 ASN A 151 SITE 2 AC1 9 SER A 154 TYR A 291 ASN A 329 ILE A 333 SITE 3 AC1 9 GLU A 402 SITE 1 AC2 2 ASN A 468 ASN B 468 SITE 1 AC3 8 ARG B 25 TYR B 29 VAL B 150 ASN B 151 SITE 2 AC3 8 TYR B 291 ASN B 329 ILE B 333 GLU B 402 CRYST1 84.240 107.730 205.510 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011871 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009282 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004866 0.00000