PDB Short entry for 4LIR HEADER TRANSPORT PROTEIN, NUCLEAR PROTEIN 03-JUL-13 4LIR TITLE CRYSTAL STRUCTURE OF A NUCLEOPORIN 35KDA (NUP35) FROM HOMO SAPIENS AT TITLE 2 2.46 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOPORIN NUP53; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 151-266; COMPND 5 SYNONYM: 35 KDA NUCLEOPORIN, MITOTIC PHOSPHOPROTEIN 44, MP-44, COMPND 6 NUCLEAR PORE COMPLEX PROTEIN NUP53, NUCLEOPORIN NUP35; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BC047029, MP44, NUP35, NUP53; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: PB1; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS PF05172 FAMILY, NUP53/35/40-TYPE RNA RECOGNITION MOTIF, STRUCTURAL KEYWDS 2 GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN KEYWDS 3 STRUCTURE INITIATIVE, PSI-BIOLOGY, TRANSPORT PROTEIN, NUCLEAR KEYWDS 4 PROTEIN, PARTNERSHIP FOR T-CELL BIOLOGY, TCELL EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG),PARTNERSHIP FOR T-CELL AUTHOR 2 BIOLOGY (TCELL) REVDAT 4 01-FEB-23 4LIR 1 SEQADV LINK REVDAT 3 24-JAN-18 4LIR 1 JRNL REVDAT 2 15-NOV-17 4LIR 1 REMARK REVDAT 1 11-SEP-13 4LIR 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG), JRNL AUTH 2 PARTNERSHIP FOR T-CELL BIOLOGY (TCELL) JRNL TITL CRYSTAL STRUCTURE OF A NUCLEOPORIN 35KDA (NUP35) FROM HOMO JRNL TITL 2 SAPIENS AT 2.46 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.46 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK, REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.46 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.56 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 9149 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.780 REMARK 3 FREE R VALUE TEST SET COUNT : 437 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 5 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.46 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.75 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.78 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2493 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.1994 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2375 REMARK 3 BIN R VALUE (WORKING SET) : 0.1970 REMARK 3 BIN FREE R VALUE : 0.2441 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.73 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 118 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1264 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 12 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 72.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.08070 REMARK 3 B22 (A**2) : 5.08070 REMARK 3 B33 (A**2) : -10.16140 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.385 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 1305 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 1762 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 602 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 24 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 194 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 1305 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 171 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 1482 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 0.99 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.02 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 2.70 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|171 - 250 } REMARK 3 ORIGIN FOR THE GROUP (A): 9.2165 23.8018 0.1026 REMARK 3 T TENSOR REMARK 3 T11: -0.2512 T22: -0.0070 REMARK 3 T33: 0.0692 T12: 0.0142 REMARK 3 T13: 0.0270 T23: -0.2296 REMARK 3 L TENSOR REMARK 3 L11: 5.5242 L22: 5.0122 REMARK 3 L33: 6.1963 L12: -2.3246 REMARK 3 L13: -3.1122 L23: 1.5028 REMARK 3 S TENSOR REMARK 3 S11: -0.0652 S12: 0.8815 S13: -1.1686 REMARK 3 S21: -0.0623 S22: -0.2815 S23: 0.0787 REMARK 3 S31: 0.7169 S32: -0.1138 S33: 0.3467 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|169 - 252 } REMARK 3 ORIGIN FOR THE GROUP (A): -7.7325 28.8146 13.1949 REMARK 3 T TENSOR REMARK 3 T11: -0.2589 T22: 0.0014 REMARK 3 T33: 0.0627 T12: -0.0697 REMARK 3 T13: 0.1057 T23: -0.0200 REMARK 3 L TENSOR REMARK 3 L11: 6.3708 L22: 3.4411 REMARK 3 L33: 4.7722 L12: -0.7109 REMARK 3 L13: 0.4965 L23: 0.0841 REMARK 3 S TENSOR REMARK 3 S11: -0.1225 S12: -0.1003 S13: -1.0631 REMARK 3 S21: 0.4539 S22: -0.0033 S23: 0.5546 REMARK 3 S31: 0.3270 S32: -0.8668 S33: 0.1258 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. A MET-INHIBITION PROTOCOL WAS USED REMARK 3 FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. REMARK 3 THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 2. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B REMARK 3 FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U REMARK 3 FACTORS. 3. THE REFINEMENT WAS RESTRAINED AGAINST THE MAD REMARK 3 PHASES. 4. NCS RESTRAINTS WERE APPLIED USING BUSTER'S LSSR REMARK 3 RESTRAINT REPRESENTATION (-AUTONCS). REMARK 4 REMARK 4 4LIR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1000080680. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JAN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837,0.97949,0.97929 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9217 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.460 REMARK 200 RESOLUTION RANGE LOW (A) : 28.558 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09100 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.46 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.52 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 0.98200 REMARK 200 R SYM FOR SHELL (I) : 0.98200 REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHARP, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20.0% MPD, 0.1M CITRATE PH 4.0, REMARK 280 NANODROP, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 106.79333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 53.39667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 80.09500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 26.69833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 133.49167 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 106.79333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 53.39667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 26.69833 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 80.09500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 133.49167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: CRYSTAL PACKING ANALYSIS SUGGESTS THE ASSIGNMENT OF A DIMER REMARK 300 AS THE SIGNIFICANT OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 304 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 SER A 151 REMARK 465 PRO A 152 REMARK 465 ALA A 153 REMARK 465 GLN A 154 REMARK 465 LEU A 155 REMARK 465 ASP A 156 REMARK 465 PRO A 157 REMARK 465 PHE A 158 REMARK 465 TYR A 159 REMARK 465 THR A 160 REMARK 465 GLN A 161 REMARK 465 GLY A 162 REMARK 465 ASP A 163 REMARK 465 SER A 164 REMARK 465 LEU A 165 REMARK 465 THR A 166 REMARK 465 SER A 167 REMARK 465 GLU A 168 REMARK 465 ASP A 169 REMARK 465 HIS A 170 REMARK 465 SER A 251 REMARK 465 SER A 252 REMARK 465 ASP A 253 REMARK 465 ARG A 254 REMARK 465 CYS A 255 REMARK 465 ALA A 256 REMARK 465 LEU A 257 REMARK 465 SER A 258 REMARK 465 SER A 259 REMARK 465 PRO A 260 REMARK 465 SER A 261 REMARK 465 LEU A 262 REMARK 465 ALA A 263 REMARK 465 PHE A 264 REMARK 465 THR A 265 REMARK 465 PRO A 266 REMARK 465 GLY B 0 REMARK 465 SER B 151 REMARK 465 PRO B 152 REMARK 465 ALA B 153 REMARK 465 GLN B 154 REMARK 465 LEU B 155 REMARK 465 ASP B 156 REMARK 465 PRO B 157 REMARK 465 PHE B 158 REMARK 465 TYR B 159 REMARK 465 THR B 160 REMARK 465 GLN B 161 REMARK 465 GLY B 162 REMARK 465 ASP B 163 REMARK 465 SER B 164 REMARK 465 LEU B 165 REMARK 465 THR B 166 REMARK 465 SER B 167 REMARK 465 GLU B 168 REMARK 465 ASP B 253 REMARK 465 ARG B 254 REMARK 465 CYS B 255 REMARK 465 ALA B 256 REMARK 465 LEU B 257 REMARK 465 SER B 258 REMARK 465 SER B 259 REMARK 465 PRO B 260 REMARK 465 SER B 261 REMARK 465 LEU B 262 REMARK 465 ALA B 263 REMARK 465 PHE B 264 REMARK 465 THR B 265 REMARK 465 PRO B 266 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 171 CG CD1 CD2 REMARK 470 ASP A 172 CG OD1 OD2 REMARK 470 ASN A 206 CG OD1 ND2 REMARK 470 LYS A 218 CD CE NZ REMARK 470 ARG A 222 CD NE CZ NH1 NH2 REMARK 470 LYS A 246 CG CD CE NZ REMARK 470 GLU A 250 CG CD OE1 OE2 REMARK 470 ASP B 169 CG OD1 OD2 REMARK 470 LEU B 171 CG CD1 CD2 REMARK 470 LYS B 223 CD CE NZ REMARK 470 GLU B 234 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 209 45.36 -88.90 REMARK 500 ASN B 209 48.98 -85.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: JCSG-422743 RELATED DB: TARGETTRACK REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT (RESIDUES 151-266) WAS EXPRESSED WITH A PURIFICATION REMARK 999 TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 4LIR A 151 266 UNP Q8NFH5 NUP53_HUMAN 151 266 DBREF 4LIR B 151 266 UNP Q8NFH5 NUP53_HUMAN 151 266 SEQADV 4LIR GLY A 0 UNP Q8NFH5 EXPRESSION TAG SEQADV 4LIR GLY B 0 UNP Q8NFH5 EXPRESSION TAG SEQRES 1 A 117 GLY SER PRO ALA GLN LEU ASP PRO PHE TYR THR GLN GLY SEQRES 2 A 117 ASP SER LEU THR SER GLU ASP HIS LEU ASP ASP SER TRP SEQRES 3 A 117 VAL THR VAL PHE GLY PHE PRO GLN ALA SER ALA SER TYR SEQRES 4 A 117 ILE LEU LEU GLN PHE ALA GLN TYR GLY ASN ILE LEU LYS SEQRES 5 A 117 HIS VAL MSE SER ASN THR GLY ASN TRP MSE HIS ILE ARG SEQRES 6 A 117 TYR GLN SER LYS LEU GLN ALA ARG LYS ALA LEU SER LYS SEQRES 7 A 117 ASP GLY ARG ILE PHE GLY GLU SER ILE MSE ILE GLY VAL SEQRES 8 A 117 LYS PRO CYS ILE ASP LYS SER VAL MSE GLU SER SER ASP SEQRES 9 A 117 ARG CYS ALA LEU SER SER PRO SER LEU ALA PHE THR PRO SEQRES 1 B 117 GLY SER PRO ALA GLN LEU ASP PRO PHE TYR THR GLN GLY SEQRES 2 B 117 ASP SER LEU THR SER GLU ASP HIS LEU ASP ASP SER TRP SEQRES 3 B 117 VAL THR VAL PHE GLY PHE PRO GLN ALA SER ALA SER TYR SEQRES 4 B 117 ILE LEU LEU GLN PHE ALA GLN TYR GLY ASN ILE LEU LYS SEQRES 5 B 117 HIS VAL MSE SER ASN THR GLY ASN TRP MSE HIS ILE ARG SEQRES 6 B 117 TYR GLN SER LYS LEU GLN ALA ARG LYS ALA LEU SER LYS SEQRES 7 B 117 ASP GLY ARG ILE PHE GLY GLU SER ILE MSE ILE GLY VAL SEQRES 8 B 117 LYS PRO CYS ILE ASP LYS SER VAL MSE GLU SER SER ASP SEQRES 9 B 117 ARG CYS ALA LEU SER SER PRO SER LEU ALA PHE THR PRO MODRES 4LIR MSE A 204 MET SELENOMETHIONINE MODRES 4LIR MSE A 211 MET SELENOMETHIONINE MODRES 4LIR MSE A 237 MET SELENOMETHIONINE MODRES 4LIR MSE A 249 MET SELENOMETHIONINE MODRES 4LIR MSE B 204 MET SELENOMETHIONINE MODRES 4LIR MSE B 211 MET SELENOMETHIONINE MODRES 4LIR MSE B 237 MET SELENOMETHIONINE MODRES 4LIR MSE B 249 MET SELENOMETHIONINE HET MSE A 204 13 HET MSE A 211 8 HET MSE A 237 8 HET MSE A 249 8 HET MSE B 204 13 HET MSE B 211 8 HET MSE B 237 8 HET MSE B 249 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 3 HOH *12(H2 O) HELIX 1 1 LEU A 171 ASP A 173 5 3 HELIX 2 2 PRO A 182 ALA A 184 5 3 HELIX 3 3 SER A 185 ALA A 194 1 10 HELIX 4 4 SER A 217 SER A 226 1 10 HELIX 5 5 ASP A 245 GLU A 250 1 6 HELIX 6 6 ASP B 169 ASP B 173 5 5 HELIX 7 7 PRO B 182 ALA B 184 5 3 HELIX 8 8 SER B 185 ALA B 194 1 10 HELIX 9 9 SER B 217 SER B 226 1 10 HELIX 10 10 ASP B 245 SER B 252 1 8 SHEET 1 A 5 ILE A 199 MSE A 204 0 SHEET 2 A 5 TRP A 210 TYR A 215 -1 O ARG A 214 N LYS A 201 SHEET 3 A 5 TRP A 175 PHE A 179 -1 N VAL A 176 O ILE A 213 SHEET 4 A 5 ILE A 236 PRO A 242 -1 O LYS A 241 N THR A 177 SHEET 5 A 5 ARG A 230 PHE A 232 -1 N PHE A 232 O ILE A 236 SHEET 1 B 4 ILE B 199 MSE B 204 0 SHEET 2 B 4 TRP B 210 TYR B 215 -1 O ARG B 214 N LYS B 201 SHEET 3 B 4 TRP B 175 PHE B 179 -1 N VAL B 176 O ILE B 213 SHEET 4 B 4 GLY B 239 PRO B 242 -1 O LYS B 241 N THR B 177 SHEET 1 C 2 ILE B 231 PHE B 232 0 SHEET 2 C 2 ILE B 236 MSE B 237 -1 O ILE B 236 N PHE B 232 LINK C VAL A 203 N MSE A 204 1555 1555 1.34 LINK C MSE A 204 N SER A 205 1555 1555 1.34 LINK C TRP A 210 N MSE A 211 1555 1555 1.33 LINK C MSE A 211 N HIS A 212 1555 1555 1.33 LINK C ILE A 236 N MSE A 237 1555 1555 1.33 LINK C MSE A 237 N ILE A 238 1555 1555 1.34 LINK C VAL A 248 N MSE A 249 1555 1555 1.35 LINK C MSE A 249 N GLU A 250 1555 1555 1.36 LINK C VAL B 203 N MSE B 204 1555 1555 1.34 LINK C MSE B 204 N SER B 205 1555 1555 1.35 LINK C TRP B 210 N MSE B 211 1555 1555 1.33 LINK C MSE B 211 N HIS B 212 1555 1555 1.34 LINK C ILE B 236 N MSE B 237 1555 1555 1.33 LINK C MSE B 237 N ILE B 238 1555 1555 1.33 LINK C VAL B 248 N MSE B 249 1555 1555 1.34 LINK C MSE B 249 N GLU B 250 1555 1555 1.35 CRYST1 70.590 70.590 160.190 90.00 90.00 120.00 P 65 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014166 0.008179 0.000000 0.00000 SCALE2 0.000000 0.016358 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006243 0.00000