PDB Short entry for 4LLB HEADER TRANSFERASE 09-JUL-13 4LLB TITLE CRYSTAL STRUCTURE OF MOZ DOUBLE PHD FINGER HISTONE H3K14AC COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE ACETYLTRANSFERASE KAT6A; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 194-323; COMPND 5 SYNONYM: MOZ, YBF2/SAS3, SAS2 AND TIP60 PROTEIN 3, MYST-3, MONOCYTIC COMPND 6 LEUKEMIA ZINC FINGER PROTEIN, RUNT-RELATED TRANSCRIPTION FACTOR- COMPND 7 BINDING PROTEIN 2, ZINC FINGER PROTEIN 220; COMPND 8 EC: 2.3.1.48; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: HISTONE H3.1; COMPND 12 CHAIN: C, D; COMPND 13 FRAGMENT: UNP RESIDUES 2-22; COMPND 14 SYNONYM: HISTONE H3/A, HISTONE H3/B, HISTONE H3/C, HISTONE H3/D, COMPND 15 HISTONE H3/F, HISTONE H3/H, HISTONE H3/I, HISTONE H3/J HISTONE H3/K, COMPND 16 HISTONE H3/L; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KAT6A, MOZ, MYST3, RUNXBP2, ZNF220; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA 2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606 KEYWDS DPF - H3K14AC COMPLEX, ZINC FINGER, PLANT HOMEODOMAIN, DOUBLE PHD KEYWDS 2 FINGER, DPF, HISTONE ACETYLTRANSFERASE, HISTONE H3 TAIL, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR I.DREVENY,S.E.DEEVES,B.YUE,D.M.HEERY REVDAT 4 06-DEC-23 4LLB 1 REMARK REVDAT 3 20-SEP-23 4LLB 1 REMARK SEQADV LINK REVDAT 2 05-FEB-14 4LLB 1 JRNL REVDAT 1 16-OCT-13 4LLB 0 JRNL AUTH I.DREVENY,S.E.DEEVES,J.FULTON,B.YUE,M.MESSMER, JRNL AUTH 2 A.BHATTACHARYA,H.M.COLLINS,D.M.HEERY JRNL TITL THE DOUBLE PHD FINGER DOMAIN OF MOZ/MYST3 INDUCES JRNL TITL 2 ALPHA-HELICAL STRUCTURE OF THE HISTONE H3 TAIL TO FACILITATE JRNL TITL 3 ACETYLATION AND METHYLATION SAMPLING AND MODIFICATION. JRNL REF NUCLEIC ACIDS RES. V. 42 822 2014 JRNL REFN ISSN 0305-1048 JRNL PMID 24150941 JRNL DOI 10.1093/NAR/GKT931 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.10 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 11577 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.970 REMARK 3 FREE R VALUE TEST SET COUNT : 691 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.1116 - 4.2717 1.00 2303 147 0.2163 0.2551 REMARK 3 2 4.2717 - 3.3922 1.00 2203 143 0.1853 0.2302 REMARK 3 3 3.3922 - 2.9639 0.99 2191 125 0.2412 0.2748 REMARK 3 4 2.9639 - 2.6931 0.98 2140 138 0.2525 0.3030 REMARK 3 5 2.6931 - 2.5002 0.94 2049 138 0.2442 0.3486 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.90 REMARK 3 SHRINKAGE RADIUS : 0.70 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.360 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.97 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 2197 REMARK 3 ANGLE : 0.903 2906 REMARK 3 CHIRALITY : 0.060 310 REMARK 3 PLANARITY : 0.005 383 REMARK 3 DIHEDRAL : 15.571 852 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4LLB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1000080772. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-FEB-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91732 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11753 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 29.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 9.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.15700 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.31700 REMARK 200 R SYM FOR SHELL (I) : 0.31700 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 4LJN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS-CL, 200 MM LI2SO4, 30% PEG REMARK 280 4000, PH 8.5, VAPOR DIFFUSION, TEMPERATURE 283K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 69.31500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 16.11500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 69.31500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 16.11500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 188 REMARK 465 SER A 189 REMARK 465 ARG A 313 REMARK 465 LYS A 314 REMARK 465 LYS A 315 REMARK 465 GLY A 316 REMARK 465 ARG A 317 REMARK 465 LYS A 318 REMARK 465 LEU A 319 REMARK 465 LEU A 320 REMARK 465 GLN A 321 REMARK 465 LYS A 322 REMARK 465 LYS A 323 REMARK 465 GLY B 188 REMARK 465 SER B 189 REMARK 465 ARG B 313 REMARK 465 LYS B 314 REMARK 465 LYS B 315 REMARK 465 GLY B 316 REMARK 465 ARG B 317 REMARK 465 LYS B 318 REMARK 465 LEU B 319 REMARK 465 LEU B 320 REMARK 465 GLN B 321 REMARK 465 LYS B 322 REMARK 465 LYS B 323 REMARK 465 PRO C 16 REMARK 465 ARG C 17 REMARK 465 LYS C 18 REMARK 465 GLN C 19 REMARK 465 LEU C 20 REMARK 465 ALA C 21 REMARK 465 PRO D 16 REMARK 465 ARG D 17 REMARK 465 LYS D 18 REMARK 465 GLN D 19 REMARK 465 LEU D 20 REMARK 465 ALA D 21 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 190 CG ND1 CD2 CE1 NE2 REMARK 470 MET A 191 CG SD CE REMARK 470 ASP A 199 CG OD1 OD2 REMARK 470 HIS B 190 CG ND1 CD2 CE1 NE2 REMARK 470 MET B 191 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH D 101 O HOH D 110 2.14 REMARK 500 O HOH C 103 O HOH C 108 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS B 198 OD2 ASP B 276 1545 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 207 25.92 -76.08 REMARK 500 ASN A 219 -156.90 -81.56 REMARK 500 GLU A 225 115.81 -162.74 REMARK 500 SER A 267 -61.78 -92.63 REMARK 500 PRO B 207 27.61 -72.95 REMARK 500 GLU B 225 115.34 -166.21 REMARK 500 ARG C 2 91.34 70.68 REMARK 500 ARG D 2 91.67 70.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 209 SG REMARK 620 2 CYS A 212 SG 106.5 REMARK 620 3 HIS A 238 ND1 112.8 100.5 REMARK 620 4 CYS A 241 SG 104.3 111.3 120.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 404 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 230 SG REMARK 620 2 CYS A 233 SG 113.6 REMARK 620 3 CYS A 259 SG 118.4 109.2 REMARK 620 4 CYS A 262 SG 109.4 102.9 101.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 265 SG REMARK 620 2 CYS A 268 SG 104.8 REMARK 620 3 HIS A 289 ND1 115.6 100.2 REMARK 620 4 CYS A 292 SG 112.2 111.2 111.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 281 SG REMARK 620 2 CYS A 284 SG 101.5 REMARK 620 3 CYS A 307 SG 109.0 115.8 REMARK 620 4 CYS A 310 SG 112.1 103.8 114.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 209 SG REMARK 620 2 CYS B 212 SG 108.9 REMARK 620 3 HIS B 238 ND1 114.7 97.6 REMARK 620 4 CYS B 241 SG 104.7 114.9 116.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 404 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 230 SG REMARK 620 2 CYS B 233 SG 109.9 REMARK 620 3 CYS B 259 SG 115.2 111.5 REMARK 620 4 CYS B 262 SG 115.2 100.6 103.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 265 SG REMARK 620 2 CYS B 268 SG 104.6 REMARK 620 3 HIS B 289 ND1 113.3 100.4 REMARK 620 4 CYS B 292 SG 109.5 112.7 115.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 281 SG REMARK 620 2 CYS B 284 SG 104.6 REMARK 620 3 CYS B 307 SG 111.6 120.7 REMARK 620 4 CYS B 310 SG 107.3 102.1 109.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN B OF HISTONE REMARK 800 ACETYLTRANSFERASE KAT6A REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4LKA RELATED DB: PDB REMARK 900 RELATED ID: 4LK9 RELATED DB: PDB REMARK 900 RELATED ID: 4LJN RELATED DB: PDB DBREF 4LLB A 194 323 UNP Q92794 KAT6A_HUMAN 194 323 DBREF 4LLB B 194 323 UNP Q92794 KAT6A_HUMAN 194 323 DBREF 4LLB C 1 21 UNP P68431 H31_HUMAN 2 22 DBREF 4LLB D 1 21 UNP P68431 H31_HUMAN 2 22 SEQADV 4LLB GLY A 188 UNP Q92794 EXPRESSION TAG SEQADV 4LLB SER A 189 UNP Q92794 EXPRESSION TAG SEQADV 4LLB HIS A 190 UNP Q92794 EXPRESSION TAG SEQADV 4LLB MET A 191 UNP Q92794 EXPRESSION TAG SEQADV 4LLB LEU A 192 UNP Q92794 EXPRESSION TAG SEQADV 4LLB GLU A 193 UNP Q92794 EXPRESSION TAG SEQADV 4LLB GLY B 188 UNP Q92794 EXPRESSION TAG SEQADV 4LLB SER B 189 UNP Q92794 EXPRESSION TAG SEQADV 4LLB HIS B 190 UNP Q92794 EXPRESSION TAG SEQADV 4LLB MET B 191 UNP Q92794 EXPRESSION TAG SEQADV 4LLB LEU B 192 UNP Q92794 EXPRESSION TAG SEQADV 4LLB GLU B 193 UNP Q92794 EXPRESSION TAG SEQRES 1 A 136 GLY SER HIS MET LEU GLU LEU PRO HIS GLU LYS ASP LYS SEQRES 2 A 136 PRO VAL ALA GLU PRO ILE PRO ILE CYS SER PHE CYS LEU SEQRES 3 A 136 GLY THR LYS GLU GLN ASN ARG GLU LYS LYS PRO GLU GLU SEQRES 4 A 136 LEU ILE SER CYS ALA ASP CYS GLY ASN SER GLY HIS PRO SEQRES 5 A 136 SER CYS LEU LYS PHE SER PRO GLU LEU THR VAL ARG VAL SEQRES 6 A 136 LYS ALA LEU ARG TRP GLN CYS ILE GLU CYS LYS THR CYS SEQRES 7 A 136 SER SER CYS ARG ASP GLN GLY LYS ASN ALA ASP ASN MET SEQRES 8 A 136 LEU PHE CYS ASP SER CYS ASP ARG GLY PHE HIS MET GLU SEQRES 9 A 136 CYS CYS ASP PRO PRO LEU THR ARG MET PRO LYS GLY MET SEQRES 10 A 136 TRP ILE CYS GLN ILE CYS ARG PRO ARG LYS LYS GLY ARG SEQRES 11 A 136 LYS LEU LEU GLN LYS LYS SEQRES 1 B 136 GLY SER HIS MET LEU GLU LEU PRO HIS GLU LYS ASP LYS SEQRES 2 B 136 PRO VAL ALA GLU PRO ILE PRO ILE CYS SER PHE CYS LEU SEQRES 3 B 136 GLY THR LYS GLU GLN ASN ARG GLU LYS LYS PRO GLU GLU SEQRES 4 B 136 LEU ILE SER CYS ALA ASP CYS GLY ASN SER GLY HIS PRO SEQRES 5 B 136 SER CYS LEU LYS PHE SER PRO GLU LEU THR VAL ARG VAL SEQRES 6 B 136 LYS ALA LEU ARG TRP GLN CYS ILE GLU CYS LYS THR CYS SEQRES 7 B 136 SER SER CYS ARG ASP GLN GLY LYS ASN ALA ASP ASN MET SEQRES 8 B 136 LEU PHE CYS ASP SER CYS ASP ARG GLY PHE HIS MET GLU SEQRES 9 B 136 CYS CYS ASP PRO PRO LEU THR ARG MET PRO LYS GLY MET SEQRES 10 B 136 TRP ILE CYS GLN ILE CYS ARG PRO ARG LYS LYS GLY ARG SEQRES 11 B 136 LYS LEU LEU GLN LYS LYS SEQRES 1 C 21 ALA ARG THR LYS GLN THR ALA ARG LYS SER THR GLY GLY SEQRES 2 C 21 ALY ALA PRO ARG LYS GLN LEU ALA SEQRES 1 D 21 ALA ARG THR LYS GLN THR ALA ARG LYS SER THR GLY GLY SEQRES 2 D 21 ALY ALA PRO ARG LYS GLN LEU ALA MODRES 4LLB ALY C 14 LYS N(6)-ACETYLLYSINE MODRES 4LLB ALY D 14 LYS N(6)-ACETYLLYSINE HET ALY C 14 12 HET ALY D 14 12 HET ZN A 401 1 HET ZN A 402 1 HET ZN A 403 1 HET ZN A 404 1 HET ZN B 401 1 HET ZN B 402 1 HET ZN B 403 1 HET ZN B 404 1 HETNAM ALY N(6)-ACETYLLYSINE HETNAM ZN ZINC ION FORMUL 3 ALY 2(C8 H16 N2 O3) FORMUL 5 ZN 8(ZN 2+) FORMUL 13 HOH *148(H2 O) HELIX 1 1 LEU A 194 LYS A 198 5 5 HELIX 2 2 SER A 245 ALA A 254 1 10 HELIX 3 3 ASN A 274 MET A 278 5 5 HELIX 4 4 HIS A 289 CYS A 293 5 5 HELIX 5 5 LEU B 194 LYS B 198 5 5 HELIX 6 6 SER B 245 ALA B 254 1 10 HELIX 7 7 ASN B 274 MET B 278 5 5 HELIX 8 8 HIS B 289 CYS B 293 5 5 HELIX 9 9 THR C 3 GLY C 12 1 10 HELIX 10 10 THR D 3 GLY D 12 1 10 SHEET 1 A 2 ILE A 228 SER A 229 0 SHEET 2 A 2 SER A 236 GLY A 237 -1 O GLY A 237 N ILE A 228 SHEET 1 B 2 LEU A 279 PHE A 280 0 SHEET 2 B 2 GLY A 287 PHE A 288 -1 O PHE A 288 N LEU A 279 SHEET 1 C 2 ILE B 228 SER B 229 0 SHEET 2 C 2 SER B 236 GLY B 237 -1 O GLY B 237 N ILE B 228 SHEET 1 D 2 LEU B 279 PHE B 280 0 SHEET 2 D 2 GLY B 287 PHE B 288 -1 O PHE B 288 N LEU B 279 LINK C GLY C 13 N ALY C 14 1555 1555 1.33 LINK C ALY C 14 N ALA C 15 1555 1555 1.33 LINK C GLY D 13 N ALY D 14 1555 1555 1.33 LINK C ALY D 14 N ALA D 15 1555 1555 1.33 LINK SG CYS A 209 ZN ZN A 403 1555 1555 2.35 LINK SG CYS A 212 ZN ZN A 403 1555 1555 2.31 LINK SG CYS A 230 ZN ZN A 404 1555 1555 2.31 LINK SG CYS A 233 ZN ZN A 404 1555 1555 2.28 LINK ND1 HIS A 238 ZN ZN A 403 1555 1555 2.02 LINK SG CYS A 241 ZN ZN A 403 1555 1555 2.30 LINK SG CYS A 259 ZN ZN A 404 1555 1555 2.30 LINK SG CYS A 262 ZN ZN A 404 1555 1555 2.29 LINK SG CYS A 265 ZN ZN A 402 1555 1555 2.30 LINK SG CYS A 268 ZN ZN A 402 1555 1555 2.29 LINK SG CYS A 281 ZN ZN A 401 1555 1555 2.32 LINK SG CYS A 284 ZN ZN A 401 1555 1555 2.28 LINK ND1 HIS A 289 ZN ZN A 402 1555 1555 2.02 LINK SG CYS A 292 ZN ZN A 402 1555 1555 2.29 LINK SG CYS A 307 ZN ZN A 401 1555 1555 2.30 LINK SG CYS A 310 ZN ZN A 401 1555 1555 2.31 LINK SG CYS B 209 ZN ZN B 403 1555 1555 2.33 LINK SG CYS B 212 ZN ZN B 403 1555 1555 2.30 LINK SG CYS B 230 ZN ZN B 404 1555 1555 2.31 LINK SG CYS B 233 ZN ZN B 404 1555 1555 2.29 LINK ND1 HIS B 238 ZN ZN B 403 1555 1555 2.03 LINK SG CYS B 241 ZN ZN B 403 1555 1555 2.29 LINK SG CYS B 259 ZN ZN B 404 1555 1555 2.29 LINK SG CYS B 262 ZN ZN B 404 1555 1555 2.30 LINK SG CYS B 265 ZN ZN B 402 1555 1555 2.33 LINK SG CYS B 268 ZN ZN B 402 1555 1555 2.31 LINK SG CYS B 281 ZN ZN B 401 1555 1555 2.31 LINK SG CYS B 284 ZN ZN B 401 1555 1555 2.27 LINK ND1 HIS B 289 ZN ZN B 402 1555 1555 2.02 LINK SG CYS B 292 ZN ZN B 402 1555 1555 2.31 LINK SG CYS B 307 ZN ZN B 401 1555 1555 2.30 LINK SG CYS B 310 ZN ZN B 401 1555 1555 2.31 CISPEP 1 ASP A 294 PRO A 295 0 1.22 CISPEP 2 ASP B 294 PRO B 295 0 2.24 SITE 1 AC1 4 CYS A 281 CYS A 284 CYS A 307 CYS A 310 SITE 1 AC2 4 CYS A 265 CYS A 268 HIS A 289 CYS A 292 SITE 1 AC3 4 CYS A 209 CYS A 212 HIS A 238 CYS A 241 SITE 1 AC4 4 CYS A 230 CYS A 233 CYS A 259 CYS A 262 SITE 1 AC5 4 CYS B 281 CYS B 284 CYS B 307 CYS B 310 SITE 1 AC6 4 CYS B 265 CYS B 268 HIS B 289 CYS B 292 SITE 1 AC7 4 CYS B 209 CYS B 212 HIS B 238 CYS B 241 SITE 1 AC8 4 CYS B 230 CYS B 233 CYS B 259 CYS B 262 SITE 1 AC9 54 GLU A 221 VAL A 250 LEU B 192 GLU B 193 SITE 2 AC9 54 ZN B 401 ZN B 402 ZN B 403 ZN B 404 SITE 3 AC9 54 HOH B 501 HOH B 502 HOH B 503 HOH B 504 SITE 4 AC9 54 HOH B 505 HOH B 506 HOH B 508 HOH B 509 SITE 5 AC9 54 HOH B 510 HOH B 511 HOH B 512 HOH B 513 SITE 6 AC9 54 HOH B 515 HOH B 518 HOH B 519 HOH B 520 SITE 7 AC9 54 HOH B 522 HOH B 523 HOH B 524 HOH B 525 SITE 8 AC9 54 HOH B 526 HOH B 528 HOH B 530 HOH B 532 SITE 9 AC9 54 HOH B 533 HOH B 535 HOH B 538 HOH B 539 SITE 10 AC9 54 HOH B 540 HOH B 541 HOH B 542 HOH B 543 SITE 11 AC9 54 HOH B 558 ALA D 1 ARG D 2 THR D 3 SITE 12 AC9 54 LYS D 4 GLN D 5 ALA D 7 ARG D 8 SITE 13 AC9 54 SER D 10 THR D 11 GLY D 13 ALY D 14 SITE 14 AC9 54 ALA D 15 HOH D 103 CRYST1 138.630 32.230 74.730 90.00 94.44 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007213 0.000000 0.000560 0.00000 SCALE2 0.000000 0.031027 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013422 0.00000