PDB Short entry for 4LZD HEADER TRANSFERASE 31-JUL-13 4LZD TITLE HUMAN DNA POLYMERASE MU- APOENZYME COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA-DIRECTED DNA/RNA POLYMERASE MU; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: POLYMERASE MU LOOP2 DELETION VARIANT, UNP RESIDUES 132-494; COMPND 5 SYNONYM: POL MU, TERMINAL TRANSFERASE; COMPND 6 EC: 2.7.7.7; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: POLM, POLMU; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEXM KEYWDS POLYMERASE, DNA BREAK REPAIR, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.F.MOON,J.M.PRYOR,D.A.RAMSDEN,T.A.KUNKEL,K.BEBENEK,L.C.PEDERSEN REVDAT 5 20-SEP-23 4LZD 1 REMARK SEQADV LINK REVDAT 4 15-NOV-17 4LZD 1 REMARK REVDAT 3 19-MAR-14 4LZD 1 JRNL REVDAT 2 05-MAR-14 4LZD 1 JRNL REVDAT 1 05-FEB-14 4LZD 0 JRNL AUTH A.F.MOON,J.M.PRYOR,D.A.RAMSDEN,T.A.KUNKEL,K.BEBENEK, JRNL AUTH 2 L.C.PEDERSEN JRNL TITL SUSTAINED ACTIVE SITE RIGIDITY DURING SYNTHESIS BY HUMAN DNA JRNL TITL 2 POLYMERASE MU. JRNL REF NAT.STRUCT.MOL.BIOL. V. 21 253 2014 JRNL REFN ISSN 1545-9993 JRNL PMID 24487959 JRNL DOI 10.1038/NSMB.2766 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8_1069 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.86 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 34070 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1708 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 25.8589 - 4.2273 1.00 2912 153 0.1816 0.2123 REMARK 3 2 4.2273 - 3.3577 1.00 2767 144 0.1509 0.1845 REMARK 3 3 3.3577 - 2.9339 1.00 2752 145 0.1812 0.2155 REMARK 3 4 2.9339 - 2.6660 1.00 2691 144 0.1923 0.2506 REMARK 3 5 2.6660 - 2.4750 1.00 2719 143 0.1935 0.2623 REMARK 3 6 2.4750 - 2.3292 1.00 2700 139 0.1944 0.2368 REMARK 3 7 2.3292 - 2.2126 1.00 2678 143 0.1800 0.2305 REMARK 3 8 2.2126 - 2.1164 1.00 2684 141 0.1750 0.2459 REMARK 3 9 2.1164 - 2.0349 1.00 2658 141 0.1785 0.2519 REMARK 3 10 2.0349 - 1.9647 0.99 2636 140 0.1966 0.2579 REMARK 3 11 1.9647 - 1.9033 0.97 2596 138 0.2112 0.3095 REMARK 3 12 1.9033 - 1.8489 0.96 2569 137 0.2290 0.3066 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.450 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.27 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 2761 REMARK 3 ANGLE : 1.280 3759 REMARK 3 CHIRALITY : 0.094 411 REMARK 3 PLANARITY : 0.006 498 REMARK 3 DIHEDRAL : 14.080 1017 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4LZD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1000081272. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-SEP-12 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : VARIMAXHF MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 92 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34121 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.849 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 9.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.41400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2IHM (MOLECULE B) WAS USED AS THE STARTING REMARK 200 MOLECULE FOR MOLECULAR REPLACEMENT FOR A LOWER RESOLUTION REMARK 200 STRUCTURE, WHICH WAS THEN USED AS THE STARTING MODEL FOR THE REMARK 200 CURRENT HIGHER RESOLUTION STRUCTURE. REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALS WERE GROWN BY MIXING 1 UL OF REMARK 280 CONCENTRATED PROTEIN (10.7MG/ML) WITH 1 UL OF MOTHER LIQUOR (50 REMARK 280 MM IMIDAZOLE PH 8, 0.8M SODIUM CITRATE) AT ROOM TEMPERATURE, REMARK 280 USING THE HANGING DROP VAPOR DIFFUSION TECHNIQUE. THE CRYSTALS REMARK 280 REACHED USABLE SIZE WITHIN 24 HOURS, AND WERE THEN DIRECTLY REMARK 280 TRANSFERRED TO A CRYOPROTECTANT SOLUTION CONTAINING 50MM REMARK 280 IMIDAZOLE PH 8, 75MM NACL, 1M SODIUM CITRATE, 10% GLYCEROL., REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 25.20350 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 62.09600 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 62.09600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 12.60175 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 62.09600 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 62.09600 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 37.80525 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 62.09600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 62.09600 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 12.60175 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 62.09600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 62.09600 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 37.80525 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 25.20350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 616 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 689 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 889 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 127 REMARK 465 SER A 128 REMARK 465 ALA A 129 REMARK 465 ALA A 130 REMARK 465 ALA A 131 REMARK 465 PRO A 132 REMARK 465 LEU A 133 REMARK 465 SER A 134 REMARK 465 PRO A 135 REMARK 465 ALA A 136 REMARK 465 CYS A 370 REMARK 465 GLU A 371 REMARK 465 SER A 372 REMARK 465 PRO A 373 REMARK 465 THR A 374 REMARK 465 ARG A 375 REMARK 465 LEU A 376 REMARK 465 ALA A 377 REMARK 465 GLN A 378 REMARK 465 GLN A 379 REMARK 465 SER A 380 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 173 CD OE1 OE2 REMARK 470 ARG A 175 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 207 CG CD OE1 OE2 REMARK 470 ARG A 211 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 223 CG CD OE1 OE2 REMARK 470 ARG A 227 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 230 CD NE CZ NH1 NH2 REMARK 470 LYS A 249 CD CE NZ REMARK 470 GLN A 308 CD OE1 NE2 REMARK 470 ASP A 383 CG OD1 OD2 REMARK 470 LYS A 438 CG CD CE NZ REMARK 470 ARG A 442 NE CZ NH1 NH2 REMARK 470 LYS A 450 CE NZ REMARK 470 LYS A 452 CD CE NZ REMARK 470 LYS A 467 CE NZ REMARK 470 GLN A 471 CD OE1 NE2 REMARK 470 GLU A 485 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 832 O HOH A 893 2.11 REMARK 500 O HOH A 814 O HOH A 856 2.14 REMARK 500 O HOH A 853 O HOH A 917 2.15 REMARK 500 NE2 GLN A 242 O HOH A 808 2.16 REMARK 500 NE2 GLN A 200 O HOH A 916 2.19 REMARK 500 O HOH A 691 O HOH A 782 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 260 -34.57 -133.53 REMARK 500 THR A 318 -153.54 -127.02 REMARK 500 THR A 318 -155.08 -125.05 REMARK 500 ASN A 493 48.89 -82.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 501 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 241 O REMARK 620 2 ILE A 243 O 99.9 REMARK 620 3 VAL A 246 O 76.7 90.7 REMARK 620 4 HOH A 651 O 66.1 146.1 56.7 REMARK 620 5 HOH A 838 O 86.1 100.0 161.0 109.1 REMARK 620 6 HOH A 899 O 159.2 99.2 95.0 93.3 98.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 504 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2IHM RELATED DB: PDB REMARK 900 RELATED ID: 4LZG RELATED DB: PDB REMARK 900 RELATED ID: 4M04 RELATED DB: PDB REMARK 900 RELATED ID: 4M0A RELATED DB: PDB DBREF 4LZD A 132 494 UNP Q9NP87 DPOLM_HUMAN 132 494 SEQADV 4LZD GLY A 127 UNP Q9NP87 EXPRESSION TAG SEQADV 4LZD SER A 128 UNP Q9NP87 EXPRESSION TAG SEQADV 4LZD ALA A 129 UNP Q9NP87 EXPRESSION TAG SEQADV 4LZD ALA A 130 UNP Q9NP87 EXPRESSION TAG SEQADV 4LZD ALA A 131 UNP Q9NP87 EXPRESSION TAG SEQADV 4LZD A UNP Q9NP87 PRO 398 DELETION SEQADV 4LZD A UNP Q9NP87 GLY 399 DELETION SEQADV 4LZD A UNP Q9NP87 ALA 400 DELETION SEQADV 4LZD A UNP Q9NP87 ALA 401 DELETION SEQADV 4LZD A UNP Q9NP87 VAL 402 DELETION SEQADV 4LZD A UNP Q9NP87 GLY 403 DELETION SEQADV 4LZD A UNP Q9NP87 GLY 404 DELETION SEQADV 4LZD A UNP Q9NP87 SER 405 DELETION SEQADV 4LZD A UNP Q9NP87 THR 406 DELETION SEQADV 4LZD A UNP Q9NP87 ARG 407 DELETION SEQADV 4LZD A UNP Q9NP87 PRO 408 DELETION SEQADV 4LZD A UNP Q9NP87 CYS 409 DELETION SEQADV 4LZD A UNP Q9NP87 PRO 410 DELETION SEQADV 4LZD GLY A 410 UNP Q9NP87 INSERTION SEQRES 1 A 356 GLY SER ALA ALA ALA PRO LEU SER PRO ALA TRP MET PRO SEQRES 2 A 356 ALA TYR ALA CYS GLN ARG PRO THR PRO LEU THR HIS HIS SEQRES 3 A 356 ASN THR GLY LEU SER GLU ALA LEU GLU ILE LEU ALA GLU SEQRES 4 A 356 ALA ALA GLY PHE GLU GLY SER GLU GLY ARG LEU LEU THR SEQRES 5 A 356 PHE CYS ARG ALA ALA SER VAL LEU LYS ALA LEU PRO SER SEQRES 6 A 356 PRO VAL THR THR LEU SER GLN LEU GLN GLY LEU PRO HIS SEQRES 7 A 356 PHE GLY GLU HIS SER SER ARG VAL VAL GLN GLU LEU LEU SEQRES 8 A 356 GLU HIS GLY VAL CYS GLU GLU VAL GLU ARG VAL ARG ARG SEQRES 9 A 356 SER GLU ARG TYR GLN THR MET LYS LEU PHE THR GLN ILE SEQRES 10 A 356 PHE GLY VAL GLY VAL LYS THR ALA ASP ARG TRP TYR ARG SEQRES 11 A 356 GLU GLY LEU ARG THR LEU ASP ASP LEU ARG GLU GLN PRO SEQRES 12 A 356 GLN LYS LEU THR GLN GLN GLN LYS ALA GLY LEU GLN HIS SEQRES 13 A 356 HIS GLN ASP LEU SER THR PRO VAL LEU ARG SER ASP VAL SEQRES 14 A 356 ASP ALA LEU GLN GLN VAL VAL GLU GLU ALA VAL GLY GLN SEQRES 15 A 356 ALA LEU PRO GLY ALA THR VAL THR LEU THR GLY GLY PHE SEQRES 16 A 356 ARG ARG GLY LYS LEU GLN GLY HIS ASP VAL ASP PHE LEU SEQRES 17 A 356 ILE THR HIS PRO LYS GLU GLY GLN GLU ALA GLY LEU LEU SEQRES 18 A 356 PRO ARG VAL MET CYS ARG LEU GLN ASP GLN GLY LEU ILE SEQRES 19 A 356 LEU TYR HIS GLN HIS GLN HIS SER CYS CYS GLU SER PRO SEQRES 20 A 356 THR ARG LEU ALA GLN GLN SER HIS MET ASP ALA PHE GLU SEQRES 21 A 356 ARG SER PHE CYS ILE PHE ARG LEU PRO GLN PRO GLY SER SEQRES 22 A 356 TRP LYS ALA VAL ARG VAL ASP LEU VAL VAL ALA PRO VAL SEQRES 23 A 356 SER GLN PHE PRO PHE ALA LEU LEU GLY TRP THR GLY SER SEQRES 24 A 356 LYS LEU PHE GLN ARG GLU LEU ARG ARG PHE SER ARG LYS SEQRES 25 A 356 GLU LYS GLY LEU TRP LEU ASN SER HIS GLY LEU PHE ASP SEQRES 26 A 356 PRO GLU GLN LYS THR PHE PHE GLN ALA ALA SER GLU GLU SEQRES 27 A 356 ASP ILE PHE ARG HIS LEU GLY LEU GLU TYR LEU PRO PRO SEQRES 28 A 356 GLU GLN ARG ASN ALA HET NA A 501 1 HET IMD A 502 5 HET EDO A 503 4 HET CL A 504 1 HETNAM NA SODIUM ION HETNAM IMD IMIDAZOLE HETNAM EDO 1,2-ETHANEDIOL HETNAM CL CHLORIDE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 NA NA 1+ FORMUL 3 IMD C3 H5 N2 1+ FORMUL 4 EDO C2 H6 O2 FORMUL 5 CL CL 1- FORMUL 6 HOH *328(H2 O) HELIX 1 1 TYR A 141 ARG A 145 5 5 HELIX 2 2 ASN A 153 GLU A 170 1 18 HELIX 3 3 SER A 172 LEU A 189 1 18 HELIX 4 4 THR A 195 GLN A 200 5 6 HELIX 5 5 GLY A 206 GLY A 220 1 15 HELIX 6 6 CYS A 222 SER A 231 1 10 HELIX 7 7 SER A 231 ILE A 243 1 13 HELIX 8 8 GLY A 247 GLU A 257 1 11 HELIX 9 9 THR A 261 GLU A 267 1 7 HELIX 10 10 GLN A 268 LEU A 272 5 5 HELIX 11 11 THR A 273 HIS A 282 1 10 HELIX 12 12 HIS A 282 THR A 288 1 7 HELIX 13 13 ARG A 292 LEU A 310 1 19 HELIX 14 14 THR A 318 ARG A 323 1 6 HELIX 15 15 GLY A 345 GLN A 357 1 13 HELIX 16 16 PRO A 423 SER A 425 5 3 HELIX 17 17 GLN A 426 GLY A 436 1 11 HELIX 18 18 SER A 437 GLY A 453 1 17 HELIX 19 19 SER A 474 LEU A 482 1 9 HELIX 20 20 PRO A 488 ARG A 492 5 5 SHEET 1 A 2 VAL A 290 LEU A 291 0 SHEET 2 A 2 GLN A 327 GLY A 328 -1 O GLY A 328 N VAL A 290 SHEET 1 B 5 THR A 314 LEU A 317 0 SHEET 2 B 5 VAL A 331 THR A 336 -1 O LEU A 334 N THR A 316 SHEET 3 B 5 SER A 411 VAL A 421 1 O VAL A 420 N ILE A 335 SHEET 4 B 5 GLU A 386 GLN A 396 -1 N PHE A 392 O VAL A 415 SHEET 5 B 5 ILE A 360 GLN A 366 -1 N LEU A 361 O ILE A 391 SHEET 1 C 3 TRP A 455 LEU A 456 0 SHEET 2 C 3 LEU A 461 ASP A 463 -1 O PHE A 462 N TRP A 455 SHEET 3 C 3 THR A 468 PHE A 469 -1 O THR A 468 N ASP A 463 LINK O THR A 241 NA NA A 501 1555 1555 2.62 LINK O ILE A 243 NA NA A 501 1555 1555 2.46 LINK O VAL A 246 NA NA A 501 1555 1555 2.82 LINK NA NA A 501 O HOH A 651 1555 1555 2.20 LINK NA NA A 501 O HOH A 838 1555 1555 2.50 LINK NA NA A 501 O AHOH A 899 1555 1555 2.29 CISPEP 1 GLY A 436 SER A 437 0 -0.81 SITE 1 AC1 6 THR A 241 ILE A 243 VAL A 246 HOH A 651 SITE 2 AC1 6 HOH A 838 HOH A 899 SITE 1 AC2 5 LEU A 461 ASP A 463 THR A 468 PHE A 470 SITE 2 AC2 5 HIS A 481 SITE 1 AC3 4 ALA A 140 ARG A 181 GLU A 443 ARG A 446 SITE 1 AC4 4 LYS A 438 HOH A 909 HOH A 910 HOH A 928 CRYST1 124.192 124.192 50.407 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008052 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008052 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019839 0.00000