PDB Short entry for 4M5O HEADER RNA BINDING PROTEIN/INHIBITOR 08-AUG-13 4M5O TITLE 3-HYDROXY-6-PHENYL-1,2-DIHYDROPYRIDIN-2-ONE BOUND TO INFLUENZA 2009 TITLE 2 H1N1 ENDONUCLEASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYMERASE PA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-204; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS SOURCE 3 (A/LIMA/WRAIR1695P/2009(H1N1)); SOURCE 4 ORGANISM_TAXID: 985958; SOURCE 5 GENE: PA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PCDF-2 KEYWDS CAP-SNATCHING, RNA BINDING PROTEIN-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.D.BAUMAN,D.PATEL,K.DAS,E.ARNOLD REVDAT 4 28-FEB-24 4M5O 1 REMARK SEQADV LINK REVDAT 3 11-DEC-13 4M5O 1 JRNL REVDAT 2 04-DEC-13 4M5O 1 REMARK REVDAT 1 18-SEP-13 4M5O 0 JRNL AUTH J.D.BAUMAN,D.PATEL,S.F.BAKER,R.S.VIJAYAN,A.XIANG,A.K.PARHI, JRNL AUTH 2 L.MARTINEZ-SOBRIDO,E.J.LAVOIE,K.DAS,E.ARNOLD JRNL TITL CRYSTALLOGRAPHIC FRAGMENT SCREENING AND STRUCTURE-BASED JRNL TITL 2 OPTIMIZATION YIELDS A NEW CLASS OF INFLUENZA ENDONUCLEASE JRNL TITL 3 INHIBITORS. JRNL REF ACS CHEM.BIOL. V. 8 2501 2013 JRNL REFN ISSN 1554-8929 JRNL PMID 23978130 JRNL DOI 10.1021/CB400400J REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.81 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 38003 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 994 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.8145 - 4.6971 0.98 2808 146 0.1679 0.1990 REMARK 3 2 4.6971 - 3.7305 1.00 2838 145 0.1397 0.1811 REMARK 3 3 3.7305 - 3.2596 0.99 2828 149 0.1628 0.1877 REMARK 3 4 3.2596 - 2.9619 0.99 2821 144 0.1720 0.2161 REMARK 3 5 2.9619 - 2.7498 0.99 2822 144 0.1757 0.2194 REMARK 3 6 2.7498 - 2.5877 0.98 2790 147 0.1812 0.2293 REMARK 3 7 2.5877 - 2.4582 0.98 2794 142 0.1812 0.2123 REMARK 3 8 2.4582 - 2.3513 0.97 2776 145 0.2102 0.2956 REMARK 3 9 2.3513 - 2.2608 0.97 2751 148 0.2157 0.2562 REMARK 3 10 2.2608 - 2.1828 0.97 2757 146 0.2308 0.2596 REMARK 3 11 2.1828 - 2.1145 0.96 2740 147 0.2524 0.2879 REMARK 3 12 2.1145 - 2.0541 0.95 2700 140 0.2914 0.3018 REMARK 3 13 2.0541 - 2.0001 0.93 2689 146 0.3322 0.3332 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.470 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 1751 REMARK 3 ANGLE : 1.027 2373 REMARK 3 CHIRALITY : 0.048 241 REMARK 3 PLANARITY : 0.006 298 REMARK 3 DIHEDRAL : 16.787 652 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -4 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.1924 15.7566 -10.3552 REMARK 3 T TENSOR REMARK 3 T11: 0.3095 T22: 0.2729 REMARK 3 T33: 0.2829 T12: -0.0642 REMARK 3 T13: -0.0258 T23: 0.0099 REMARK 3 L TENSOR REMARK 3 L11: 4.6219 L22: 3.6645 REMARK 3 L33: 2.5935 L12: 2.1854 REMARK 3 L13: -0.3291 L23: -0.4393 REMARK 3 S TENSOR REMARK 3 S11: -0.2649 S12: 0.1461 S13: -0.3098 REMARK 3 S21: -0.2438 S22: -0.0153 S23: -0.2233 REMARK 3 S31: 0.2247 S32: 0.4237 S33: 0.2302 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 63 THROUGH 126 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.0644 11.0327 -2.3380 REMARK 3 T TENSOR REMARK 3 T11: 0.2355 T22: 0.2555 REMARK 3 T33: 0.2874 T12: -0.0746 REMARK 3 T13: -0.0266 T23: 0.0184 REMARK 3 L TENSOR REMARK 3 L11: 2.6864 L22: 4.1514 REMARK 3 L33: 5.0199 L12: 0.5902 REMARK 3 L13: 0.6966 L23: -0.8762 REMARK 3 S TENSOR REMARK 3 S11: 0.2704 S12: -0.3631 S13: -0.2440 REMARK 3 S21: 0.1109 S22: -0.3164 S23: -0.0310 REMARK 3 S31: 0.2549 S32: -0.4412 S33: 0.0097 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 127 THROUGH 195 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.0219 26.1403 -1.9962 REMARK 3 T TENSOR REMARK 3 T11: 0.4466 T22: 0.2349 REMARK 3 T33: 0.3875 T12: -0.0923 REMARK 3 T13: -0.0722 T23: -0.0486 REMARK 3 L TENSOR REMARK 3 L11: 5.6574 L22: 2.3963 REMARK 3 L33: 5.3098 L12: 2.6112 REMARK 3 L13: -1.5569 L23: -0.8831 REMARK 3 S TENSOR REMARK 3 S11: -0.0207 S12: -0.0881 S13: 0.7643 REMARK 3 S21: 0.0590 S22: -0.1025 S23: 0.3956 REMARK 3 S31: -0.9015 S32: 0.0485 S33: 0.0111 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4M5O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1000081497. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.917 REMARK 200 MONOCHROMATOR : HORIZONTAL BENT SI(111), REMARK 200 ASYMMETRICALLY CUT WITH WATER REMARK 200 COOLED CU BLOCK REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44059 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : 0.06400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.2900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.01 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.53000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.690 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.8.2_1309 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM MES, 27% PEG8K, 200 MM AMMONIUM REMARK 280 SULFATE, 1 MM MANGANESE CHLORIDE, 10 MM MAGNESIUM ACETATE, 10 MM REMARK 280 TAURINE, AND 50 MM SODIUM FLUORIDE, PH 6.7, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.07700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 33.07700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 44.41700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.64650 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 44.41700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.64650 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 33.07700 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 44.41700 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 50.64650 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 33.07700 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 44.41700 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 50.64650 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -53.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -36 REMARK 465 ALA A -35 REMARK 465 HIS A -34 REMARK 465 HIS A -33 REMARK 465 HIS A -32 REMARK 465 HIS A -31 REMARK 465 HIS A -30 REMARK 465 HIS A -29 REMARK 465 SER A -28 REMARK 465 ARG A -27 REMARK 465 ALA A -26 REMARK 465 TRP A -25 REMARK 465 ARG A -24 REMARK 465 HIS A -23 REMARK 465 PRO A -22 REMARK 465 GLN A -21 REMARK 465 PHE A -20 REMARK 465 GLY A -19 REMARK 465 GLY A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 ALA A -11 REMARK 465 LEU A -10 REMARK 465 GLU A -9 REMARK 465 VAL A -8 REMARK 465 LEU A -7 REMARK 465 PHE A -6 REMARK 465 GLN A -5 REMARK 465 ARG A 196 REMARK 465 GLY A 197 REMARK 465 GLU A 198 REMARK 465 GLU A 199 REMARK 465 THR A 200 REMARK 465 VAL A 201 REMARK 465 GLU A 202 REMARK 465 GLU A 203 REMARK 465 ARG A 204 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 23 O HOH A 533 2.12 REMARK 500 O3 SO4 A 304 O HOH A 502 2.15 REMARK 500 O HOH A 517 O HOH A 520 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 51 -2.11 79.46 REMARK 500 ARG A 125 -165.67 -104.65 REMARK 500 GLU A 141 -0.57 68.95 REMARK 500 THR A 162 -56.28 65.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 301 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 41 NE2 REMARK 620 2 ASP A 108 OD2 96.5 REMARK 620 3 GLU A 119 OE2 173.5 86.7 REMARK 620 4 ILE A 120 O 84.7 93.0 89.5 REMARK 620 5 X48 A 306 O1 88.6 100.0 96.4 165.9 REMARK 620 6 X48 A 306 O 84.1 174.4 93.2 92.6 74.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 302 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 80 OE2 REMARK 620 2 ASP A 108 OD1 90.3 REMARK 620 3 X48 A 306 O1 96.2 87.5 REMARK 620 4 HOH A 421 O 84.5 88.0 175.5 REMARK 620 5 HOH A 475 O 93.2 176.4 92.5 91.9 REMARK 620 6 HOH A 539 O 175.6 86.1 86.2 92.8 90.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 303 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 80 OE1 REMARK 620 2 X48 A 307 O1 157.9 REMARK 620 3 X48 A 307 O 81.9 77.3 REMARK 620 4 X48 A 308 O1 110.5 91.3 164.7 REMARK 620 5 X48 A 308 O 90.5 98.0 92.8 78.6 REMARK 620 6 HOH A 405 O 93.5 87.3 112.1 77.0 155.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE X48 A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE X48 A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE X48 A 308 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4LN7 RELATED DB: PDB REMARK 900 RELATED ID: 4M5Q RELATED DB: PDB REMARK 900 RELATED ID: 4M5R RELATED DB: PDB REMARK 900 RELATED ID: 4M5U RELATED DB: PDB REMARK 900 RELATED ID: 4M5V RELATED DB: PDB REMARK 900 RELATED ID: 4MK1 RELATED DB: PDB REMARK 900 RELATED ID: 4MK2 RELATED DB: PDB REMARK 900 RELATED ID: 4MK5 RELATED DB: PDB DBREF 4M5O A 1 204 UNP F0TRT1 F0TRT1_9INFA 1 204 SEQADV 4M5O MET A -36 UNP F0TRT1 INITIATING METHIONINE SEQADV 4M5O ALA A -35 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5O HIS A -34 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5O HIS A -33 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5O HIS A -32 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5O HIS A -31 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5O HIS A -30 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5O HIS A -29 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5O SER A -28 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5O ARG A -27 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5O ALA A -26 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5O TRP A -25 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5O ARG A -24 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5O HIS A -23 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5O PRO A -22 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5O GLN A -21 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5O PHE A -20 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5O GLY A -19 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5O GLY A -18 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5O HIS A -17 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5O HIS A -16 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5O HIS A -15 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5O HIS A -14 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5O HIS A -13 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5O HIS A -12 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5O ALA A -11 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5O LEU A -10 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5O GLU A -9 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5O VAL A -8 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5O LEU A -7 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5O PHE A -6 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5O GLN A -5 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5O GLY A -4 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5O PRO A -3 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5O LEU A -2 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5O GLY A -1 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5O SER A 0 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5O VAL A 201 UNP F0TRT1 ILE 201 CONFLICT SEQRES 1 A 241 MET ALA HIS HIS HIS HIS HIS HIS SER ARG ALA TRP ARG SEQRES 2 A 241 HIS PRO GLN PHE GLY GLY HIS HIS HIS HIS HIS HIS ALA SEQRES 3 A 241 LEU GLU VAL LEU PHE GLN GLY PRO LEU GLY SER MET GLU SEQRES 4 A 241 ASP PHE VAL ARG GLN CYS PHE ASN PRO MET ILE VAL GLU SEQRES 5 A 241 LEU ALA GLU LYS ALA MET LYS GLU TYR GLY GLU ASP PRO SEQRES 6 A 241 LYS ILE GLU THR ASN LYS PHE ALA ALA ILE CYS THR HIS SEQRES 7 A 241 LEU GLU VAL CYS PHE MET TYR SER ASP PHE HIS PHE ILE SEQRES 8 A 241 ASP GLU ARG GLY GLU SER ILE ILE VAL GLU SER GLY ASP SEQRES 9 A 241 PRO ASN ALA LEU LEU LYS HIS ARG PHE GLU ILE ILE GLU SEQRES 10 A 241 GLY ARG ASP ARG ILE MET ALA TRP THR VAL VAL ASN SER SEQRES 11 A 241 ILE CYS ASN THR THR GLY VAL GLU LYS PRO LYS PHE LEU SEQRES 12 A 241 PRO ASP LEU TYR ASP TYR LYS GLU ASN ARG PHE ILE GLU SEQRES 13 A 241 ILE GLY VAL THR ARG ARG GLU VAL HIS ILE TYR TYR LEU SEQRES 14 A 241 GLU LYS ALA ASN LYS ILE LYS SER GLU LYS THR HIS ILE SEQRES 15 A 241 HIS ILE PHE SER PHE THR GLY GLU GLU MET ALA THR LYS SEQRES 16 A 241 ALA ASP TYR THR LEU ASP GLU GLU SER ARG ALA ARG ILE SEQRES 17 A 241 LYS THR ARG LEU PHE THR ILE ARG GLN GLU MET ALA SER SEQRES 18 A 241 ARG SER LEU TRP ASP SER PHE ARG GLN SER GLU ARG GLY SEQRES 19 A 241 GLU GLU THR VAL GLU GLU ARG HET MN A 301 1 HET MN A 302 1 HET MN A 303 1 HET SO4 A 304 5 HET EDO A 305 4 HET X48 A 306 14 HET X48 A 307 14 HET X48 A 308 14 HETNAM MN MANGANESE (II) ION HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM X48 3-HYDROXY-6-PHENYLPYRIDIN-2(5H)-ONE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 MN 3(MN 2+) FORMUL 5 SO4 O4 S 2- FORMUL 6 EDO C2 H6 O2 FORMUL 7 X48 3(C11 H9 N O2) FORMUL 10 HOH *139(H2 O) HELIX 1 1 SER A 0 PHE A 9 1 10 HELIX 2 2 ASN A 10 TYR A 24 1 15 HELIX 3 3 GLU A 31 ASP A 50 1 20 HELIX 4 4 ASP A 83 GLY A 99 1 17 HELIX 5 5 GLU A 126 LYS A 139 1 14 HELIX 6 6 LYS A 158 ASP A 160 5 3 HELIX 7 7 ASP A 164 ARG A 185 1 22 HELIX 8 8 LEU A 187 SER A 194 1 8 SHEET 1 A 3 SER A 60 ILE A 62 0 SHEET 2 A 3 HIS A 52 ILE A 54 -1 N PHE A 53 O ILE A 61 SHEET 3 A 3 LYS A 73 HIS A 74 -1 O LYS A 73 N ILE A 54 SHEET 1 B 5 PHE A 76 ILE A 78 0 SHEET 2 B 5 LEU A 109 ASP A 111 -1 O TYR A 110 N GLU A 77 SHEET 3 B 5 ARG A 116 THR A 123 -1 O ARG A 116 N ASP A 111 SHEET 4 B 5 HIS A 144 SER A 149 1 O HIS A 144 N GLU A 119 SHEET 5 B 5 GLU A 154 ALA A 156 -1 O MET A 155 N ILE A 147 LINK NE2 HIS A 41 MN MN A 301 1555 1555 2.23 LINK OE2 GLU A 80 MN MN A 302 1555 1555 2.11 LINK OE1 GLU A 80 MN MN A 303 1555 1555 2.19 LINK OD2 ASP A 108 MN MN A 301 1555 1555 2.17 LINK OD1 ASP A 108 MN MN A 302 1555 1555 2.17 LINK OE2 GLU A 119 MN MN A 301 1555 1555 2.10 LINK O ILE A 120 MN MN A 301 1555 1555 2.25 LINK MN MN A 301 O1 X48 A 306 1555 1555 2.22 LINK MN MN A 301 O X48 A 306 1555 1555 2.26 LINK MN MN A 302 O1 X48 A 306 1555 1555 2.09 LINK MN MN A 302 O HOH A 421 1555 1555 2.21 LINK MN MN A 302 O HOH A 475 1555 1555 2.14 LINK MN MN A 302 O HOH A 539 1555 1555 2.13 LINK MN MN A 303 O1 X48 A 307 1555 1555 2.15 LINK MN MN A 303 O X48 A 307 1555 1555 2.20 LINK MN MN A 303 O1 X48 A 308 1555 1555 1.83 LINK MN MN A 303 O X48 A 308 1555 1555 2.40 LINK MN MN A 303 O HOH A 405 1555 1555 2.21 SITE 1 AC1 5 HIS A 41 ASP A 108 GLU A 119 ILE A 120 SITE 2 AC1 5 X48 A 306 SITE 1 AC2 6 GLU A 80 ASP A 108 X48 A 306 HOH A 421 SITE 2 AC2 6 HOH A 475 HOH A 539 SITE 1 AC3 4 GLU A 80 X48 A 307 X48 A 308 HOH A 405 SITE 1 AC4 7 ILE A 30 THR A 32 ASN A 33 GLU A 165 SITE 2 AC4 7 GLU A 166 ALA A 169 HOH A 502 SITE 1 AC5 6 LYS A 34 ARG A 124 SER A 194 X48 A 306 SITE 2 AC5 6 HOH A 446 HOH A 517 SITE 1 AC6 12 LYS A 34 HIS A 41 GLU A 80 ASP A 108 SITE 2 AC6 12 GLU A 119 ILE A 120 LYS A 134 MN A 301 SITE 3 AC6 12 MN A 302 EDO A 305 HOH A 475 HOH A 539 SITE 1 AC7 10 LYS A 19 TYR A 24 GLU A 80 GLY A 81 SITE 2 AC7 10 ARG A 82 ASP A 83 MN A 303 X48 A 308 SITE 3 AC7 10 HOH A 405 HOH A 477 SITE 1 AC8 10 ALA A 20 TYR A 24 GLU A 26 GLU A 80 SITE 2 AC8 10 MN A 303 X48 A 307 HOH A 405 HOH A 463 SITE 3 AC8 10 HOH A 465 HOH A 475 CRYST1 88.834 101.293 66.154 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011257 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009872 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015116 0.00000