PDB Short entry for 4M6Q HEADER TRANSFERASE/TRANSFERASE INHIBITOR 10-AUG-13 4M6Q TITLE IDENTIFICATION OF AMIDES DERIVED FROM 1H-PYRAZOLO[3,4-B]PYRIDINE-5- TITLE 2 CARBOXYLIC ACID AS POTENT INHIBITORS OF HUMAN NICOTINAMIDE TITLE 3 PHOSPHORIBOSYLTRANSFERASE (NAMPT) COMPND MOL_ID: 1; COMPND 2 MOLECULE: NICOTINAMIDE PHOSPHORIBOSYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: NAMPRTASE, NAMPT, PRE-B-CELL COLONY-ENHANCING FACTOR 1, PRE- COMPND 5 B CELL-ENHANCING FACTOR, VISFATIN; COMPND 6 EC: 2.4.2.12; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NAMPT, PBEF, PBEF1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.M.GIANNETTI,X.ZHENG,N.SKELTON,W.WANG,B.BRAVO,Y.FENG,J.GUNZNER- AUTHOR 2 TOSTE,Y.HO,R.HUA,C.WANG,Q.ZHAO,B.M.LIEDERER,Y.LIU,T.O'BRIEN,J.OEH, AUTHOR 3 D.SAMPATH,Y.SHEN,L.WANG,H.WU,Y.XIAO,P.YUEN,M.ZAK,G.ZHAO, AUTHOR 4 P.S.DRAGOVICH REVDAT 4 28-FEB-24 4M6Q 1 REMARK SEQADV REVDAT 3 24-JAN-18 4M6Q 1 AUTHOR REVDAT 2 02-OCT-13 4M6Q 1 JRNL REVDAT 1 25-SEP-13 4M6Q 0 JRNL AUTH X.ZHENG,K.W.BAIR,P.BAUER,T.BAUMEISTER,K.K.BOWMAN, JRNL AUTH 2 A.J.BUCKMELTER,M.CALIGIURI,K.H.CLODFELTER,Y.FENG,B.HAN, JRNL AUTH 3 Y.C.HO,N.KLEY,H.LI,X.LIANG,B.M.LIEDERER,J.LIN,J.LY, JRNL AUTH 4 T.O'BRIEN,J.OEH,A.OH,D.J.REYNOLDS,D.SAMPATH,G.SHARMA, JRNL AUTH 5 N.SKELTON,C.C.SMITH,J.TREMAYNE,L.WANG,W.WANG,Z.WANG,H.WU, JRNL AUTH 6 J.WU,Y.XIAO,G.YANG,P.W.YUEN,M.ZAK,P.S.DRAGOVICH JRNL TITL IDENTIFICATION OF AMIDES DERIVED FROM JRNL TITL 2 1H-PYRAZOLO[3,4-B]PYRIDINE-5-CARBOXYLIC ACID AS POTENT JRNL TITL 3 INHIBITORS OF HUMAN NICOTINAMIDE PHOSPHORIBOSYLTRANSFERASE JRNL TITL 4 (NAMPT). JRNL REF BIOORG.MED.CHEM.LETT. V. 23 5488 2013 JRNL REFN ISSN 0960-894X JRNL PMID 24021463 JRNL DOI 10.1016/J.BMCL.2013.08.074 REMARK 2 REMARK 2 RESOLUTION. 2.41 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.3_928) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.41 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 65.24 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.120 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.7 REMARK 3 NUMBER OF REFLECTIONS : 40034 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1992 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 65.2634 - 7.1258 0.92 2696 157 0.1356 0.1368 REMARK 3 2 7.1258 - 5.6570 0.93 2694 163 0.1388 0.1696 REMARK 3 3 5.6570 - 4.9422 0.92 2689 136 0.1323 0.1702 REMARK 3 4 4.9422 - 4.4904 0.89 2586 140 0.1106 0.1983 REMARK 3 5 4.4904 - 4.1686 0.86 2512 133 0.1161 0.1387 REMARK 3 6 4.1686 - 3.9229 0.89 2603 144 0.1312 0.1382 REMARK 3 7 3.9229 - 3.7265 0.89 2560 145 0.1348 0.1783 REMARK 3 8 3.7265 - 3.5643 0.89 2595 128 0.1561 0.2033 REMARK 3 9 3.5643 - 3.4271 0.90 2660 120 0.1715 0.1951 REMARK 3 10 3.4271 - 3.3088 0.91 2660 151 0.1782 0.2721 REMARK 3 11 3.3088 - 3.2053 0.93 2698 143 0.1860 0.2378 REMARK 3 12 3.2053 - 3.1137 0.94 2758 139 0.1839 0.2283 REMARK 3 13 3.1137 - 3.0317 0.94 2721 149 0.1841 0.3059 REMARK 3 14 3.0317 - 2.9578 0.94 2739 132 0.2184 0.2778 REMARK 3 15 2.9578 - 2.8905 0.94 2728 141 0.2318 0.2746 REMARK 3 16 2.8905 - 2.8290 0.91 2671 125 0.2221 0.2972 REMARK 3 17 2.8290 - 2.7724 0.92 2674 153 0.2188 0.2955 REMARK 3 18 2.7724 - 2.7201 0.93 2727 150 0.2170 0.2742 REMARK 3 19 2.7201 - 2.6715 0.92 2702 140 0.2193 0.3072 REMARK 3 20 2.6715 - 2.6263 0.92 2632 144 0.2230 0.2841 REMARK 3 21 2.6263 - 2.5839 0.92 2769 135 0.2326 0.3219 REMARK 3 22 2.5839 - 2.5441 0.93 2724 145 0.2308 0.2869 REMARK 3 23 2.5441 - 2.5067 0.92 2616 137 0.2480 0.2839 REMARK 3 24 2.5067 - 2.4714 0.93 2740 145 0.2642 0.3457 REMARK 3 25 2.4714 - 2.4380 0.93 2728 124 0.2574 0.2955 REMARK 3 26 2.4380 - 2.4060 0.93 2689 142 0.2786 0.3296 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.070 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 24.99200 REMARK 3 B22 (A**2) : 11.06240 REMARK 3 B33 (A**2) : 2.10720 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.55070 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 7822 REMARK 3 ANGLE : 0.839 10619 REMARK 3 CHIRALITY : 0.058 1154 REMARK 3 PLANARITY : 0.003 1337 REMARK 3 DIHEDRAL : 13.175 2865 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A OR CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 13.4373 1.0726 22.5569 REMARK 3 T TENSOR REMARK 3 T11: 0.0378 T22: 0.0026 REMARK 3 T33: 0.0142 T12: -0.0025 REMARK 3 T13: 0.0058 T23: 0.0095 REMARK 3 L TENSOR REMARK 3 L11: 0.1570 L22: 0.1687 REMARK 3 L33: 0.0879 L12: 0.0794 REMARK 3 L13: 0.0086 L23: 0.0210 REMARK 3 S TENSOR REMARK 3 S11: 0.0092 S12: -0.0364 S13: 0.0035 REMARK 3 S21: -0.0361 S22: -0.0028 S23: -0.0171 REMARK 3 S31: -0.0166 S32: 0.0553 S33: -0.0112 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4M6Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1000081535. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 8.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.999993 REMARK 200 MONOCHROMATOR : LIQUID NITROGEN COOLED DUAL REMARK 200 CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40096 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.406 REMARK 200 RESOLUTION RANGE LOW (A) : 65.239 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.41 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.41 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2UL + 0.2UL DROPS CONTAINING 6MG/ML REMARK 280 NAMPT, 0.1M SODIUM PHOSPHATE, 25-29% POLYETHYLENE GLYCOL 3350, REMARK 280 0.2M NACL, 1MM COMPOUND, FOLLOWED BY IN-SITU ADDUCT FORMATION , REMARK 280 PH 8.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 53.50800 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -52.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 PRO A 3 REMARK 465 ALA A 4 REMARK 465 ALA A 5 REMARK 465 GLU A 6 REMARK 465 ALA A 7 REMARK 465 THR A 44 REMARK 465 GLU A 45 REMARK 465 ASN A 46 REMARK 465 SER A 47 REMARK 465 LYS A 48 REMARK 465 LEU A 49 REMARK 465 ARG A 50 REMARK 465 LYS A 51 REMARK 465 VAL A 52 REMARK 465 ALA A 488 REMARK 465 ALA A 489 REMARK 465 HIS A 490 REMARK 465 HIS A 491 REMARK 465 LEU A 492 REMARK 465 GLU A 493 REMARK 465 HIS A 494 REMARK 465 HIS A 495 REMARK 465 HIS A 496 REMARK 465 HIS A 497 REMARK 465 HIS A 498 REMARK 465 HIS A 499 REMARK 465 HIS A 500 REMARK 465 HIS A 501 REMARK 465 MET B 1 REMARK 465 ASN B 2 REMARK 465 PRO B 3 REMARK 465 ALA B 4 REMARK 465 ALA B 5 REMARK 465 GLU B 6 REMARK 465 ALA B 7 REMARK 465 LYS B 43 REMARK 465 THR B 44 REMARK 465 GLU B 45 REMARK 465 ASN B 46 REMARK 465 SER B 47 REMARK 465 LYS B 48 REMARK 465 LEU B 49 REMARK 465 ARG B 50 REMARK 465 LYS B 51 REMARK 465 GLU B 487 REMARK 465 ALA B 488 REMARK 465 ALA B 489 REMARK 465 HIS B 490 REMARK 465 HIS B 491 REMARK 465 LEU B 492 REMARK 465 GLU B 493 REMARK 465 HIS B 494 REMARK 465 HIS B 495 REMARK 465 HIS B 496 REMARK 465 HIS B 497 REMARK 465 HIS B 498 REMARK 465 HIS B 499 REMARK 465 HIS B 500 REMARK 465 HIS B 501 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 43 CG CD CE NZ REMARK 470 GLU A 487 CG CD OE1 OE2 REMARK 470 VAL B 52 CB CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 795 O HOH B 796 2.15 REMARK 500 O3 PO4 A 603 O HOH A 708 2.16 REMARK 500 O HOH B 783 O HOH B 798 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 231 -56.37 -129.15 REMARK 500 PHE A 269 52.49 -118.92 REMARK 500 GLU A 293 -68.89 -135.39 REMARK 500 ALA A 306 57.61 -147.15 REMARK 500 ASP A 313 25.88 -154.59 REMARK 500 PRO A 333 97.92 -63.93 REMARK 500 ASP A 416 74.18 -159.21 REMARK 500 GLN A 481 150.80 -49.26 REMARK 500 TYR B 54 61.27 62.12 REMARK 500 TYR B 231 -53.33 -130.64 REMARK 500 PHE B 269 68.15 -119.46 REMARK 500 TYR B 281 -55.31 -125.04 REMARK 500 GLU B 293 -62.15 -135.33 REMARK 500 ASP B 313 19.64 -143.78 REMARK 500 ASP B 416 75.22 -163.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 20T A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE POP A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 20T B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE POP B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 603 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4LV9 RELATED DB: PDB REMARK 900 RELATED ID: 4LVA RELATED DB: PDB REMARK 900 RELATED ID: 4LVB RELATED DB: PDB REMARK 900 RELATED ID: 4LVD RELATED DB: PDB REMARK 900 RELATED ID: 4LVF RELATED DB: PDB REMARK 900 RELATED ID: 4LVG RELATED DB: PDB REMARK 900 RELATED ID: 4M6P RELATED DB: PDB DBREF 4M6Q A 1 491 UNP P43490 NAMPT_HUMAN 1 491 DBREF 4M6Q B 1 491 UNP P43490 NAMPT_HUMAN 1 491 SEQADV 4M6Q LEU A 492 UNP P43490 EXPRESSION TAG SEQADV 4M6Q GLU A 493 UNP P43490 EXPRESSION TAG SEQADV 4M6Q HIS A 494 UNP P43490 EXPRESSION TAG SEQADV 4M6Q HIS A 495 UNP P43490 EXPRESSION TAG SEQADV 4M6Q HIS A 496 UNP P43490 EXPRESSION TAG SEQADV 4M6Q HIS A 497 UNP P43490 EXPRESSION TAG SEQADV 4M6Q HIS A 498 UNP P43490 EXPRESSION TAG SEQADV 4M6Q HIS A 499 UNP P43490 EXPRESSION TAG SEQADV 4M6Q HIS A 500 UNP P43490 EXPRESSION TAG SEQADV 4M6Q HIS A 501 UNP P43490 EXPRESSION TAG SEQADV 4M6Q LEU B 492 UNP P43490 EXPRESSION TAG SEQADV 4M6Q GLU B 493 UNP P43490 EXPRESSION TAG SEQADV 4M6Q HIS B 494 UNP P43490 EXPRESSION TAG SEQADV 4M6Q HIS B 495 UNP P43490 EXPRESSION TAG SEQADV 4M6Q HIS B 496 UNP P43490 EXPRESSION TAG SEQADV 4M6Q HIS B 497 UNP P43490 EXPRESSION TAG SEQADV 4M6Q HIS B 498 UNP P43490 EXPRESSION TAG SEQADV 4M6Q HIS B 499 UNP P43490 EXPRESSION TAG SEQADV 4M6Q HIS B 500 UNP P43490 EXPRESSION TAG SEQADV 4M6Q HIS B 501 UNP P43490 EXPRESSION TAG SEQRES 1 A 501 MET ASN PRO ALA ALA GLU ALA GLU PHE ASN ILE LEU LEU SEQRES 2 A 501 ALA THR ASP SER TYR LYS VAL THR HIS TYR LYS GLN TYR SEQRES 3 A 501 PRO PRO ASN THR SER LYS VAL TYR SER TYR PHE GLU CYS SEQRES 4 A 501 ARG GLU LYS LYS THR GLU ASN SER LYS LEU ARG LYS VAL SEQRES 5 A 501 LYS TYR GLU GLU THR VAL PHE TYR GLY LEU GLN TYR ILE SEQRES 6 A 501 LEU ASN LYS TYR LEU LYS GLY LYS VAL VAL THR LYS GLU SEQRES 7 A 501 LYS ILE GLN GLU ALA LYS ASP VAL TYR LYS GLU HIS PHE SEQRES 8 A 501 GLN ASP ASP VAL PHE ASN GLU LYS GLY TRP ASN TYR ILE SEQRES 9 A 501 LEU GLU LYS TYR ASP GLY HIS LEU PRO ILE GLU ILE LYS SEQRES 10 A 501 ALA VAL PRO GLU GLY PHE VAL ILE PRO ARG GLY ASN VAL SEQRES 11 A 501 LEU PHE THR VAL GLU ASN THR ASP PRO GLU CYS TYR TRP SEQRES 12 A 501 LEU THR ASN TRP ILE GLU THR ILE LEU VAL GLN SER TRP SEQRES 13 A 501 TYR PRO ILE THR VAL ALA THR ASN SER ARG GLU GLN LYS SEQRES 14 A 501 LYS ILE LEU ALA LYS TYR LEU LEU GLU THR SER GLY ASN SEQRES 15 A 501 LEU ASP GLY LEU GLU TYR LYS LEU HIS ASP PHE GLY TYR SEQRES 16 A 501 ARG GLY VAL SER SER GLN GLU THR ALA GLY ILE GLY ALA SEQRES 17 A 501 SER ALA HIS LEU VAL ASN PHE LYS GLY THR ASP THR VAL SEQRES 18 A 501 ALA GLY LEU ALA LEU ILE LYS LYS TYR TYR GLY THR LYS SEQRES 19 A 501 ASP PRO VAL PRO GLY TYR SER VAL PRO ALA ALA GLU HIS SEQRES 20 A 501 SER THR ILE THR ALA TRP GLY LYS ASP HIS GLU LYS ASP SEQRES 21 A 501 ALA PHE GLU HIS ILE VAL THR GLN PHE SER SER VAL PRO SEQRES 22 A 501 VAL SER VAL VAL SER ASP SER TYR ASP ILE TYR ASN ALA SEQRES 23 A 501 CYS GLU LYS ILE TRP GLY GLU ASP LEU ARG HIS LEU ILE SEQRES 24 A 501 VAL SER ARG SER THR GLN ALA PRO LEU ILE ILE ARG PRO SEQRES 25 A 501 ASP SER GLY ASN PRO LEU ASP THR VAL LEU LYS VAL LEU SEQRES 26 A 501 GLU ILE LEU GLY LYS LYS PHE PRO VAL THR GLU ASN SER SEQRES 27 A 501 LYS GLY TYR LYS LEU LEU PRO PRO TYR LEU ARG VAL ILE SEQRES 28 A 501 GLN GLY ASP GLY VAL ASP ILE ASN THR LEU GLN GLU ILE SEQRES 29 A 501 VAL GLU GLY MET LYS GLN LYS MET TRP SER ILE GLU ASN SEQRES 30 A 501 ILE ALA PHE GLY SER GLY GLY GLY LEU LEU GLN LYS LEU SEQRES 31 A 501 THR ARG ASP LEU LEU ASN CYS SER PHE LYS CYS SER TYR SEQRES 32 A 501 VAL VAL THR ASN GLY LEU GLY ILE ASN VAL PHE LYS ASP SEQRES 33 A 501 PRO VAL ALA ASP PRO ASN LYS ARG SER LYS LYS GLY ARG SEQRES 34 A 501 LEU SER LEU HIS ARG THR PRO ALA GLY ASN PHE VAL THR SEQRES 35 A 501 LEU GLU GLU GLY LYS GLY ASP LEU GLU GLU TYR GLY GLN SEQRES 36 A 501 ASP LEU LEU HIS THR VAL PHE LYS ASN GLY LYS VAL THR SEQRES 37 A 501 LYS SER TYR SER PHE ASP GLU ILE ARG LYS ASN ALA GLN SEQRES 38 A 501 LEU ASN ILE GLU LEU GLU ALA ALA HIS HIS LEU GLU HIS SEQRES 39 A 501 HIS HIS HIS HIS HIS HIS HIS SEQRES 1 B 501 MET ASN PRO ALA ALA GLU ALA GLU PHE ASN ILE LEU LEU SEQRES 2 B 501 ALA THR ASP SER TYR LYS VAL THR HIS TYR LYS GLN TYR SEQRES 3 B 501 PRO PRO ASN THR SER LYS VAL TYR SER TYR PHE GLU CYS SEQRES 4 B 501 ARG GLU LYS LYS THR GLU ASN SER LYS LEU ARG LYS VAL SEQRES 5 B 501 LYS TYR GLU GLU THR VAL PHE TYR GLY LEU GLN TYR ILE SEQRES 6 B 501 LEU ASN LYS TYR LEU LYS GLY LYS VAL VAL THR LYS GLU SEQRES 7 B 501 LYS ILE GLN GLU ALA LYS ASP VAL TYR LYS GLU HIS PHE SEQRES 8 B 501 GLN ASP ASP VAL PHE ASN GLU LYS GLY TRP ASN TYR ILE SEQRES 9 B 501 LEU GLU LYS TYR ASP GLY HIS LEU PRO ILE GLU ILE LYS SEQRES 10 B 501 ALA VAL PRO GLU GLY PHE VAL ILE PRO ARG GLY ASN VAL SEQRES 11 B 501 LEU PHE THR VAL GLU ASN THR ASP PRO GLU CYS TYR TRP SEQRES 12 B 501 LEU THR ASN TRP ILE GLU THR ILE LEU VAL GLN SER TRP SEQRES 13 B 501 TYR PRO ILE THR VAL ALA THR ASN SER ARG GLU GLN LYS SEQRES 14 B 501 LYS ILE LEU ALA LYS TYR LEU LEU GLU THR SER GLY ASN SEQRES 15 B 501 LEU ASP GLY LEU GLU TYR LYS LEU HIS ASP PHE GLY TYR SEQRES 16 B 501 ARG GLY VAL SER SER GLN GLU THR ALA GLY ILE GLY ALA SEQRES 17 B 501 SER ALA HIS LEU VAL ASN PHE LYS GLY THR ASP THR VAL SEQRES 18 B 501 ALA GLY LEU ALA LEU ILE LYS LYS TYR TYR GLY THR LYS SEQRES 19 B 501 ASP PRO VAL PRO GLY TYR SER VAL PRO ALA ALA GLU HIS SEQRES 20 B 501 SER THR ILE THR ALA TRP GLY LYS ASP HIS GLU LYS ASP SEQRES 21 B 501 ALA PHE GLU HIS ILE VAL THR GLN PHE SER SER VAL PRO SEQRES 22 B 501 VAL SER VAL VAL SER ASP SER TYR ASP ILE TYR ASN ALA SEQRES 23 B 501 CYS GLU LYS ILE TRP GLY GLU ASP LEU ARG HIS LEU ILE SEQRES 24 B 501 VAL SER ARG SER THR GLN ALA PRO LEU ILE ILE ARG PRO SEQRES 25 B 501 ASP SER GLY ASN PRO LEU ASP THR VAL LEU LYS VAL LEU SEQRES 26 B 501 GLU ILE LEU GLY LYS LYS PHE PRO VAL THR GLU ASN SER SEQRES 27 B 501 LYS GLY TYR LYS LEU LEU PRO PRO TYR LEU ARG VAL ILE SEQRES 28 B 501 GLN GLY ASP GLY VAL ASP ILE ASN THR LEU GLN GLU ILE SEQRES 29 B 501 VAL GLU GLY MET LYS GLN LYS MET TRP SER ILE GLU ASN SEQRES 30 B 501 ILE ALA PHE GLY SER GLY GLY GLY LEU LEU GLN LYS LEU SEQRES 31 B 501 THR ARG ASP LEU LEU ASN CYS SER PHE LYS CYS SER TYR SEQRES 32 B 501 VAL VAL THR ASN GLY LEU GLY ILE ASN VAL PHE LYS ASP SEQRES 33 B 501 PRO VAL ALA ASP PRO ASN LYS ARG SER LYS LYS GLY ARG SEQRES 34 B 501 LEU SER LEU HIS ARG THR PRO ALA GLY ASN PHE VAL THR SEQRES 35 B 501 LEU GLU GLU GLY LYS GLY ASP LEU GLU GLU TYR GLY GLN SEQRES 36 B 501 ASP LEU LEU HIS THR VAL PHE LYS ASN GLY LYS VAL THR SEQRES 37 B 501 LYS SER TYR SER PHE ASP GLU ILE ARG LYS ASN ALA GLN SEQRES 38 B 501 LEU ASN ILE GLU LEU GLU ALA ALA HIS HIS LEU GLU HIS SEQRES 39 B 501 HIS HIS HIS HIS HIS HIS HIS HET 20T A 601 45 HET POP A 602 9 HET PO4 A 603 5 HET 20T B 601 45 HET POP B 602 9 HET PO4 B 603 5 HETNAM 20T 1-(5-O-PHOSPHONO-BETA-D-RIBOFURANOSYL)-N-(4-{[3- HETNAM 2 20T (TRIFLUOROMETHYL)PHENYL]SULFONYL}BENZYL)-1H- HETNAM 3 20T PYRAZOLO[3,4-B]PYRIDINE-5-CARBOXAMIDE HETNAM POP PYROPHOSPHATE 2- HETNAM PO4 PHOSPHATE ION FORMUL 3 20T 2(C26 H24 F3 N4 O10 P S) FORMUL 4 POP 2(H2 O7 P2 2-) FORMUL 5 PO4 2(O4 P 3-) FORMUL 9 HOH *258(H2 O) HELIX 1 1 ASN A 10 ALA A 14 5 5 HELIX 2 2 ASP A 16 GLN A 25 5 10 HELIX 3 3 GLY A 61 LEU A 70 1 10 HELIX 4 4 THR A 76 GLN A 92 1 17 HELIX 5 5 ASN A 97 ASP A 109 1 13 HELIX 6 6 ASP A 138 THR A 145 5 8 HELIX 7 7 ILE A 148 GLN A 154 1 7 HELIX 8 8 SER A 155 GLY A 181 1 27 HELIX 9 9 GLY A 185 TYR A 188 5 4 HELIX 10 10 SER A 200 LEU A 212 1 13 HELIX 11 11 VAL A 221 TYR A 231 1 11 HELIX 12 12 GLU A 246 ALA A 252 1 7 HELIX 13 13 TRP A 253 ASP A 256 5 4 HELIX 14 14 HIS A 257 PHE A 269 1 13 HELIX 15 15 ASP A 282 LYS A 289 1 8 HELIX 16 16 LEU A 295 ILE A 299 5 5 HELIX 17 17 ASN A 316 PHE A 332 1 17 HELIX 18 18 ASP A 357 LYS A 371 1 15 HELIX 19 19 SER A 374 GLU A 376 5 3 HELIX 20 20 GLY A 383 GLN A 388 1 6 HELIX 21 21 ASP A 420 ARG A 424 5 5 HELIX 22 22 GLY A 446 GLU A 451 5 6 HELIX 23 23 SER A 472 ALA A 480 1 9 HELIX 24 24 LEU A 482 GLU A 487 1 6 HELIX 25 25 ASN B 10 ALA B 14 5 5 HELIX 26 26 ASP B 16 GLN B 25 5 10 HELIX 27 27 GLY B 61 LEU B 70 1 10 HELIX 28 28 THR B 76 PHE B 91 1 16 HELIX 29 29 ASN B 97 ASP B 109 1 13 HELIX 30 30 ASP B 138 TYR B 142 5 5 HELIX 31 31 TRP B 143 ILE B 148 1 6 HELIX 32 32 ILE B 148 GLN B 154 1 7 HELIX 33 33 SER B 155 GLY B 181 1 27 HELIX 34 34 GLY B 185 TYR B 188 5 4 HELIX 35 35 SER B 200 LEU B 212 1 13 HELIX 36 36 VAL B 221 TYR B 231 1 11 HELIX 37 37 GLU B 246 ALA B 252 1 7 HELIX 38 38 TRP B 253 ASP B 256 5 4 HELIX 39 39 HIS B 257 PHE B 269 1 13 HELIX 40 40 ASP B 282 LYS B 289 1 8 HELIX 41 41 LEU B 295 ILE B 299 5 5 HELIX 42 42 ASN B 316 PHE B 332 1 17 HELIX 43 43 ASP B 357 LYS B 371 1 15 HELIX 44 44 SER B 374 GLU B 376 5 3 HELIX 45 45 GLY B 383 GLN B 388 1 6 HELIX 46 46 THR B 391 LEU B 395 5 5 HELIX 47 47 ASP B 420 ARG B 424 5 5 HELIX 48 48 GLY B 446 GLU B 451 5 6 HELIX 49 49 SER B 472 GLN B 481 1 10 SHEET 1 A 7 LEU A 409 ASN A 412 0 SHEET 2 A 7 CYS A 397 THR A 406 -1 N VAL A 404 O ILE A 411 SHEET 3 A 7 THR A 30 CYS A 39 -1 N TYR A 36 O LYS A 400 SHEET 4 A 7 VAL A 130 ASN A 136 -1 O VAL A 134 N SER A 35 SHEET 5 A 7 ILE A 114 ALA A 118 -1 N GLU A 115 O GLU A 135 SHEET 6 A 7 HIS A 459 LYS A 463 -1 O HIS A 459 N ALA A 118 SHEET 7 A 7 LYS A 466 VAL A 467 -1 O LYS A 466 N LYS A 463 SHEET 1 B 2 GLU A 56 VAL A 58 0 SHEET 2 B 2 VAL A 124 PRO A 126 -1 O ILE A 125 N THR A 57 SHEET 1 C 5 LEU A 190 ASP A 192 0 SHEET 2 C 5 ILE A 378 SER A 382 1 O PHE A 380 N HIS A 191 SHEET 3 C 5 LEU A 348 GLN A 352 1 N GLN A 352 O ALA A 379 SHEET 4 C 5 LEU A 308 ARG A 311 1 N ILE A 310 O ARG A 349 SHEET 5 C 5 VAL A 274 VAL A 277 1 N VAL A 274 O ILE A 309 SHEET 1 D 2 THR A 335 GLU A 336 0 SHEET 2 D 2 LYS A 342 LEU A 343 -1 O LEU A 343 N THR A 335 SHEET 1 E 2 SER A 431 ARG A 434 0 SHEET 2 E 2 PHE A 440 LEU A 443 -1 O VAL A 441 N HIS A 433 SHEET 1 F 7 LEU B 409 ASN B 412 0 SHEET 2 F 7 CYS B 397 THR B 406 -1 N VAL B 404 O ILE B 411 SHEET 3 F 7 THR B 30 CYS B 39 -1 N TYR B 36 O LYS B 400 SHEET 4 F 7 VAL B 130 ASN B 136 -1 O VAL B 134 N SER B 35 SHEET 5 F 7 ILE B 114 ALA B 118 -1 N GLU B 115 O GLU B 135 SHEET 6 F 7 HIS B 459 LYS B 463 -1 O PHE B 462 N ILE B 116 SHEET 7 F 7 LYS B 466 VAL B 467 -1 O LYS B 466 N LYS B 463 SHEET 1 G 2 GLU B 56 VAL B 58 0 SHEET 2 G 2 VAL B 124 PRO B 126 -1 O ILE B 125 N THR B 57 SHEET 1 H 5 LEU B 190 ASP B 192 0 SHEET 2 H 5 ILE B 378 SER B 382 1 O PHE B 380 N HIS B 191 SHEET 3 H 5 LEU B 348 GLN B 352 1 N GLN B 352 O GLY B 381 SHEET 4 H 5 LEU B 308 ARG B 311 1 N LEU B 308 O ARG B 349 SHEET 5 H 5 VAL B 274 VAL B 277 1 N VAL B 274 O ILE B 309 SHEET 1 I 2 THR B 335 GLU B 336 0 SHEET 2 I 2 LYS B 342 LEU B 343 -1 O LEU B 343 N THR B 335 SHEET 1 J 2 SER B 431 ARG B 434 0 SHEET 2 J 2 PHE B 440 LEU B 443 -1 O VAL B 441 N HIS B 433 SITE 1 AC1 27 TYR A 188 HIS A 191 PHE A 193 ARG A 196 SITE 2 AC1 27 GLY A 217 ASP A 219 TYR A 240 SER A 241 SITE 3 AC1 27 VAL A 242 ALA A 244 SER A 275 ILE A 309 SITE 4 AC1 27 ARG A 311 ASP A 313 GLY A 353 GLY A 383 SITE 5 AC1 27 GLY A 384 PO4 A 603 HOH A 708 HOH A 711 SITE 6 AC1 27 HOH A 756 HOH A 792 HOH A 810 ASP B 16 SITE 7 AC1 27 TYR B 18 ARG B 392 POP B 602 SITE 1 AC2 11 ARG A 40 ARG A 392 SER A 398 LYS A 400 SITE 2 AC2 11 HOH A 742 HOH A 778 HOH A 821 HOH A 827 SITE 3 AC2 11 ARG B 196 20T B 601 PO4 B 603 SITE 1 AC3 9 ARG A 196 GLU A 246 HIS A 247 ARG A 311 SITE 2 AC3 9 20T A 601 HOH A 708 HOH A 823 TYR B 18 SITE 3 AC3 9 POP B 602 SITE 1 AC4 26 ASP A 16 TYR A 18 ARG A 392 POP A 602 SITE 2 AC4 26 HOH A 742 HOH A 821 TYR B 188 HIS B 191 SITE 3 AC4 26 PHE B 193 ARG B 196 GLY B 217 ASP B 219 SITE 4 AC4 26 TYR B 240 SER B 241 VAL B 242 ALA B 244 SITE 5 AC4 26 SER B 275 ILE B 309 ARG B 311 ASP B 313 SITE 6 AC4 26 ILE B 351 GLY B 353 GLY B 383 GLY B 384 SITE 7 AC4 26 PO4 B 603 HOH B 823 SITE 1 AC5 10 ARG A 196 20T A 601 PO4 A 603 HOH A 708 SITE 2 AC5 10 ARG B 40 ARG B 392 SER B 398 LYS B 400 SITE 3 AC5 10 LYS B 423 HOH B 772 SITE 1 AC6 9 TYR A 18 POP A 602 HOH A 736 ARG B 196 SITE 2 AC6 9 GLU B 246 HIS B 247 ARG B 311 ASP B 313 SITE 3 AC6 9 20T B 601 CRYST1 60.355 107.016 82.844 90.00 96.56 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016569 0.000000 0.001905 0.00000 SCALE2 0.000000 0.009344 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012150 0.00000