PDB Short entry for 4M6T HEADER TRANSCRIPTION REGULATOR 11-AUG-13 4M6T TITLE STRUCTURE OF HUMAN PAF1 AND LEO1 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA POLYMERASE II-ASSOCIATED FACTOR 1 HOMOLOG, LINKER, RNA COMPND 3 POLYMERASE-ASSOCIATED PROTEIN LEO1; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: UNP RESIDUES 170-250 OF PAF1, UNP RESIDUES 370-462 OF LEO1; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: CHIMERA OF RNA POLYMERASE II-ASSOCIATED FACTOR 1 COMPND 8 HOMOLOG, LINKER, RNA POLYMERASE-ASSOCIATED PROTEIN LEO1 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PAF1, LEO1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PAF1-LEO1 SUBCOMPLEX, TRANSCRIPTION ELONGATOR, TRANSCRIPTION KEYWDS 2 REGULATOR EXPDTA X-RAY DIFFRACTION AUTHOR Y.SHEN,X.QIN REVDAT 4 20-MAR-24 4M6T 1 REMARK REVDAT 3 28-JUN-17 4M6T 1 SOURCE REVDAT 2 25-DEC-13 4M6T 1 JRNL REVDAT 1 02-OCT-13 4M6T 0 JRNL AUTH X.CHU,X.QIN,H.XU,L.LI,Z.WANG,F.LI,X.XIE,H.ZHOU,Y.SHEN,J.LONG JRNL TITL STRUCTURAL INSIGHTS INTO PAF1 COMPLEX ASSEMBLY AND HISTONE JRNL TITL 2 BINDING JRNL REF NUCLEIC ACIDS RES. V. 41 10619 2013 JRNL REFN ISSN 0305-1048 JRNL PMID 24038468 JRNL DOI 10.1093/NAR/GKT819 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.1_743) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.79 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 14136 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.234 REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 712 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.7924 - 4.2697 1.00 2796 134 0.2191 0.2461 REMARK 3 2 4.2697 - 3.3896 1.00 2702 126 0.1929 0.2356 REMARK 3 3 3.3896 - 2.9613 1.00 2666 154 0.2440 0.2791 REMARK 3 4 2.9613 - 2.6906 1.00 2668 140 0.2884 0.3006 REMARK 3 5 2.6906 - 2.4978 0.99 2592 158 0.3371 0.3766 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 30.54 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.800 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.040 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 43.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 7.31810 REMARK 3 B22 (A**2) : 7.31810 REMARK 3 B33 (A**2) : -14.63630 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 1434 REMARK 3 ANGLE : 1.182 1944 REMARK 3 CHIRALITY : 0.084 210 REMARK 3 PLANARITY : 0.005 252 REMARK 3 DIHEDRAL : 19.909 517 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4M6T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1000081538. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14136 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.498 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.5M SODIUM FORMATE, PH 7.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 57.58400 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 33.24614 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 52.47900 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 57.58400 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 33.24614 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 52.47900 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 57.58400 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 33.24614 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 52.47900 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 57.58400 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 33.24614 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 52.47900 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 57.58400 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 33.24614 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 52.47900 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 57.58400 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 33.24614 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 52.47900 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 66.49228 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 104.95800 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 66.49228 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 104.95800 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 66.49228 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 104.95800 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 66.49228 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 104.95800 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 66.49228 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 104.95800 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 66.49228 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 104.95800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 23940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 46220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -161.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 130 REMARK 465 GLU A 131 REMARK 465 GLU A 132 REMARK 465 MET A 133 REMARK 465 LEU A 134 REMARK 465 ASP A 135 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 10 CG CD CE NZ REMARK 470 ASP A 11 CG OD1 OD2 REMARK 470 GLU A 24 CG CD OE1 OE2 REMARK 470 TYR A 34 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP A 64 CG OD1 OD2 REMARK 470 SER A 65 OG REMARK 470 ASP A 66 CG OD1 OD2 REMARK 470 SER A 73 OG REMARK 470 SER A 82 OG REMARK 470 GLN A 83 CG CD OE1 NE2 REMARK 470 ARG A 87 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 110 CG OD1 ND2 REMARK 470 GLU A 129 CG CD OE1 OE2 REMARK 470 GLU A 136 CG CD OE1 OE2 REMARK 470 GLU A 137 CG CD OE1 OE2 REMARK 470 ARG A 139 CG CD NE CZ NH1 NH2 REMARK 470 THR A 140 OG1 CG2 REMARK 470 GLU A 185 CG CD OE1 OE2 REMARK 470 LYS A 191 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 22 OD1 ASN A 167 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 31 -34.70 -131.15 REMARK 500 ASN A 94 146.37 -179.64 REMARK 500 ASP A 157 165.74 -40.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 93 ASN A 94 -147.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAM A 201 DBREF 4M6T A 10 90 UNP Q8N7H5 PAF1_HUMAN 170 250 DBREF 4M6T A 91 99 PDB 4M6T 4M6T 91 99 DBREF 4M6T A 100 192 UNP Q8WVC0 LEO1_HUMAN 370 462 SEQRES 1 A 183 LYS ASP ARG ASP SER GLN ILE THR ALA ILE GLU LYS THR SEQRES 2 A 183 PHE GLU ASP ALA GLN LYS SER ILE SER GLN HIS TYR SER SEQRES 3 A 183 LYS PRO ARG VAL THR PRO VAL GLU VAL MET PRO VAL PHE SEQRES 4 A 183 PRO ASP PHE LYS MET TRP ILE ASN PRO CYS ALA GLN VAL SEQRES 5 A 183 ILE PHE ASP SER ASP PRO ALA PRO LYS ASP THR SER GLY SEQRES 6 A 183 ALA ALA ALA LEU GLU MET MET SER GLN ALA MET ILE ARG SEQRES 7 A 183 GLY MET MET SER GLY GLU ASN LEU TYR PHE GLN SER GLY SEQRES 8 A 183 ASN ASP LEU TYR PHE VAL LYS LEU PRO ASN PHE LEU SER SEQRES 9 A 183 VAL GLU PRO ARG PRO PHE ASP PRO GLN TYR TYR GLU ASP SEQRES 10 A 183 GLU PHE GLU ASP GLU GLU MET LEU ASP GLU GLU GLY ARG SEQRES 11 A 183 THR ARG LEU LYS LEU LYS VAL GLU ASN THR ILE ARG TRP SEQRES 12 A 183 ARG ILE ARG ARG ASP GLU GLU GLY ASN GLU ILE LYS GLU SEQRES 13 A 183 SER ASN ALA ARG ILE VAL LYS TRP SER ASP GLY SER MET SEQRES 14 A 183 SER LEU HIS LEU GLY ASN GLU VAL PHE ASP VAL TYR LYS SEQRES 15 A 183 ALA HET SAM A 201 27 HETNAM SAM S-ADENOSYLMETHIONINE FORMUL 2 SAM C15 H22 N6 O5 S FORMUL 3 HOH *4(H2 O) HELIX 1 1 ASP A 11 LYS A 28 1 18 HELIX 2 2 MET A 85 MET A 90 1 6 HELIX 3 3 ASP A 120 TYR A 124 5 5 HELIX 4 4 GLY A 138 GLU A 147 1 10 SHEET 1 A 4 PRO A 41 PRO A 46 0 SHEET 2 A 4 ALA A 168 TRP A 173 -1 O ILE A 170 N MET A 45 SHEET 3 A 4 MET A 178 LEU A 182 -1 O HIS A 181 N ARG A 169 SHEET 4 A 4 GLU A 185 VAL A 189 -1 O PHE A 187 N LEU A 180 SHEET 1 B 2 LYS A 52 ILE A 55 0 SHEET 2 B 2 LEU A 78 MET A 81 -1 O LEU A 78 N ILE A 55 SHEET 1 C 2 ASN A 94 SER A 99 0 SHEET 2 C 2 ASP A 102 LYS A 107 -1 O VAL A 106 N LEU A 95 SHEET 1 D 2 SER A 113 VAL A 114 0 SHEET 2 D 2 THR A 149 ILE A 150 1 O ILE A 150 N SER A 113 SHEET 1 E 2 TRP A 152 ARG A 156 0 SHEET 2 E 2 GLU A 162 SER A 166 -1 O ILE A 163 N ARG A 155 SITE 1 AC1 13 ALA A 26 GLN A 27 LYS A 28 SER A 29 SITE 2 AC1 13 ILE A 30 PRO A 41 VAL A 42 GLU A 43 SITE 3 AC1 13 VAL A 44 GLU A 158 GLU A 159 GLY A 160 SITE 4 AC1 13 ARG A 169 CRYST1 115.168 115.168 157.437 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008683 0.005013 0.000000 0.00000 SCALE2 0.000000 0.010026 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006352 0.00000