PDB Short entry for 4MEE HEADER PROTEIN BINDING 26-AUG-13 4MEE TITLE CRYSTAL STRUCTURE OF THE TRANSPORT UNIT OF THE AUTOTRANSPORTER AIDA-I TITLE 2 FROM ESCHERICHIA COLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIFFUSE ADHERENCE ADHESIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN (UNP RESIDUES 841-1287); COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: AIDA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: UT5600; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PJM007 KEYWDS BETA BARREL, OUTER MEMBRANE PROTEIN, AUTOTRANSPORTER, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR I.GAWARZEWSKI,B.TSCHAPEK,A.HOEPPNER,S.H.SMITS,J.JOSE,L.SCHMITT REVDAT 3 28-FEB-24 4MEE 1 SEQADV REVDAT 2 23-JUL-14 4MEE 1 JRNL REVDAT 1 04-JUN-14 4MEE 0 JRNL AUTH I.GAWARZEWSKI,F.DIMAIO,E.WINTERER,B.TSCHAPEK,S.H.SMITS, JRNL AUTH 2 J.JOSE,L.SCHMITT JRNL TITL CRYSTAL STRUCTURE OF THE TRANSPORT UNIT OF THE JRNL TITL 2 AUTOTRANSPORTER ADHESIN INVOLVED IN DIFFUSE ADHERENCE FROM JRNL TITL 3 ESCHERICHIA COLI. JRNL REF J.STRUCT.BIOL. V. 187 20 2014 JRNL REFN ISSN 1047-8477 JRNL PMID 24841284 JRNL DOI 10.1016/J.JSB.2014.05.003 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 9183 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.251 REMARK 3 R VALUE (WORKING SET) : 0.248 REMARK 3 FREE R VALUE : 0.306 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 493 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 679 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.61 REMARK 3 BIN R VALUE (WORKING SET) : 0.3340 REMARK 3 BIN FREE R VALUE SET COUNT : 33 REMARK 3 BIN FREE R VALUE : 0.3480 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2234 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.09000 REMARK 3 B22 (A**2) : 3.81000 REMARK 3 B33 (A**2) : -0.72000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.466 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.387 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 47.436 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.902 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.837 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2287 ; 0.015 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3105 ; 1.648 ; 1.911 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 299 ; 5.274 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 106 ;42.089 ;25.755 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 333 ;25.414 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 5 ;24.060 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 335 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1781 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1208 ; 0.797 ; 4.070 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1503 ; 1.162 ; 6.102 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1079 ; 1.129 ; 4.152 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2287 ; 3.698 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2243 ;10.036 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 962 A 1286 REMARK 3 ORIGIN FOR THE GROUP (A): -7.7413 5.7019 -18.3516 REMARK 3 T TENSOR REMARK 3 T11: 0.0327 T22: 0.1091 REMARK 3 T33: 0.0414 T12: 0.0182 REMARK 3 T13: -0.0059 T23: -0.0361 REMARK 3 L TENSOR REMARK 3 L11: 1.9693 L22: 2.2289 REMARK 3 L33: 1.7715 L12: 1.1260 REMARK 3 L13: 0.6228 L23: 1.1627 REMARK 3 S TENSOR REMARK 3 S11: -0.0705 S12: 0.3151 S13: -0.1431 REMARK 3 S21: -0.0283 S22: 0.1580 S23: -0.0853 REMARK 3 S31: -0.0117 S32: 0.0900 S33: -0.0875 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4MEE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-SEP-13. REMARK 100 THE DEPOSITION ID IS D_1000081805. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8726 REMARK 200 MONOCHROMATOR : NI MIRROR + NI FILTER REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9173 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.44600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: ROSETTA REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM CACODYLATE, AND 27.5 % REMARK 280 (V/V) PEG 2000 MME, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 273K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.16500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.02500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.92500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.02500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.16500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.92500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 818 REMARK 465 HIS A 819 REMARK 465 HIS A 820 REMARK 465 HIS A 821 REMARK 465 HIS A 822 REMARK 465 HIS A 823 REMARK 465 SER A 824 REMARK 465 ARG A 825 REMARK 465 ARG A 826 REMARK 465 SER A 827 REMARK 465 PRO A 828 REMARK 465 GLU A 829 REMARK 465 TYR A 830 REMARK 465 PHE A 831 REMARK 465 LYS A 832 REMARK 465 GLY A 833 REMARK 465 PRO A 834 REMARK 465 PRO A 835 REMARK 465 SER A 836 REMARK 465 PRO A 837 REMARK 465 ARG A 838 REMARK 465 SER A 839 REMARK 465 LEU A 840 REMARK 465 ASN A 841 REMARK 465 PRO A 842 REMARK 465 THR A 843 REMARK 465 LYS A 844 REMARK 465 GLU A 845 REMARK 465 SER A 846 REMARK 465 ALA A 847 REMARK 465 GLY A 848 REMARK 465 ASN A 849 REMARK 465 THR A 850 REMARK 465 LEU A 851 REMARK 465 THR A 852 REMARK 465 VAL A 853 REMARK 465 SER A 854 REMARK 465 ASN A 855 REMARK 465 TYR A 856 REMARK 465 THR A 857 REMARK 465 GLY A 858 REMARK 465 THR A 859 REMARK 465 PRO A 860 REMARK 465 GLY A 861 REMARK 465 SER A 862 REMARK 465 VAL A 863 REMARK 465 ILE A 864 REMARK 465 SER A 865 REMARK 465 LEU A 866 REMARK 465 GLY A 867 REMARK 465 GLY A 868 REMARK 465 VAL A 869 REMARK 465 LEU A 870 REMARK 465 GLU A 871 REMARK 465 GLY A 872 REMARK 465 ASP A 873 REMARK 465 ASN A 874 REMARK 465 SER A 875 REMARK 465 LEU A 876 REMARK 465 THR A 877 REMARK 465 ASP A 878 REMARK 465 ARG A 879 REMARK 465 LEU A 880 REMARK 465 VAL A 881 REMARK 465 VAL A 882 REMARK 465 LYS A 883 REMARK 465 GLY A 884 REMARK 465 ASN A 885 REMARK 465 THR A 886 REMARK 465 SER A 887 REMARK 465 GLY A 888 REMARK 465 GLN A 889 REMARK 465 SER A 890 REMARK 465 ASP A 891 REMARK 465 ILE A 892 REMARK 465 VAL A 893 REMARK 465 TYR A 894 REMARK 465 VAL A 895 REMARK 465 ASN A 896 REMARK 465 GLU A 897 REMARK 465 ASP A 898 REMARK 465 GLY A 899 REMARK 465 SER A 900 REMARK 465 GLY A 901 REMARK 465 GLY A 902 REMARK 465 GLN A 903 REMARK 465 THR A 904 REMARK 465 ARG A 905 REMARK 465 ASP A 906 REMARK 465 GLY A 907 REMARK 465 ILE A 908 REMARK 465 ASN A 909 REMARK 465 ILE A 910 REMARK 465 ILE A 911 REMARK 465 SER A 912 REMARK 465 VAL A 913 REMARK 465 GLU A 914 REMARK 465 GLY A 915 REMARK 465 ASN A 916 REMARK 465 SER A 917 REMARK 465 ASP A 918 REMARK 465 ALA A 919 REMARK 465 GLU A 920 REMARK 465 PHE A 921 REMARK 465 SER A 922 REMARK 465 LEU A 923 REMARK 465 LYS A 924 REMARK 465 ASN A 925 REMARK 465 ARG A 926 REMARK 465 VAL A 927 REMARK 465 VAL A 928 REMARK 465 ALA A 929 REMARK 465 GLY A 930 REMARK 465 ALA A 931 REMARK 465 TYR A 932 REMARK 465 ASP A 933 REMARK 465 TYR A 934 REMARK 465 THR A 935 REMARK 465 LEU A 936 REMARK 465 GLN A 937 REMARK 465 LYS A 938 REMARK 465 GLY A 939 REMARK 465 ASN A 940 REMARK 465 GLU A 941 REMARK 465 SER A 942 REMARK 465 GLY A 943 REMARK 465 THR A 944 REMARK 465 ASP A 945 REMARK 465 ASN A 946 REMARK 465 LYS A 947 REMARK 465 GLY A 948 REMARK 465 TRP A 949 REMARK 465 TYR A 950 REMARK 465 LEU A 951 REMARK 465 THR A 952 REMARK 465 SER A 953 REMARK 465 HIS A 954 REMARK 465 LEU A 955 REMARK 465 PRO A 956 REMARK 465 THR A 957 REMARK 465 SER A 958 REMARK 465 ASP A 959 REMARK 465 THR A 960 REMARK 465 ARG A 961 REMARK 465 PHE A 991 REMARK 465 ARG A 992 REMARK 465 ALA A 993 REMARK 465 MET A 994 REMARK 465 SER A 995 REMARK 465 ASP A 996 REMARK 465 ASN A 997 REMARK 465 THR A 998 REMARK 465 GLN A 999 REMARK 465 PRO A 1000 REMARK 465 GLU A 1001 REMARK 465 SER A 1002 REMARK 465 ALA A 1003 REMARK 465 GLY A 1148 REMARK 465 THR A 1202 REMARK 465 LEU A 1203 REMARK 465 ASP A 1204 REMARK 465 LYS A 1205 REMARK 465 ASP A 1206 REMARK 465 THR A 1207 REMARK 465 GLY A 1208 REMARK 465 ARG A 1209 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 989 CG CD CE NZ REMARK 470 GLN A 990 CG CD OE1 NE2 REMARK 470 ARG A1013 CG CD NE CZ NH1 NH2 REMARK 470 PHE A1041 CG CD1 CD2 CE1 CE2 CZ REMARK 470 HIS A1042 CG ND1 CD2 CE1 NE2 REMARK 470 GLN A1045 CG CD OE1 NE2 REMARK 470 LYS A1061 CG CD CE NZ REMARK 470 TYR A1067 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A1071 CG CD CE NZ REMARK 470 ARG A1074 CG CD NE CZ NH1 NH2 REMARK 470 ASP A1116 CG OD1 OD2 REMARK 470 TRP A1143 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A1143 CZ3 CH2 REMARK 470 GLU A1147 CG CD OE1 OE2 REMARK 470 LYS A1184 CG CD CE NZ REMARK 470 TRP A1197 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A1197 CZ3 CH2 REMARK 470 LYS A1200 CG CD CE NZ REMARK 470 SER A1201 OG REMARK 470 GLU A1210 CG CD OE1 OE2 REMARK 470 PHE A1211 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP A1232 CG OD1 OD2 REMARK 470 LYS A1283 CG CD CE NZ REMARK 470 SER A1285 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 1020 OD1 ASN A 1023 1.61 REMARK 500 NZ LYS A 1063 CD1 ILE A 1065 2.01 REMARK 500 CE2 TYR A 1106 NE1 TRP A 1108 2.09 REMARK 500 OD1 ASN A 1175 OG1 THR A 1177 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A1125 CA - CB - CG ANGL. DEV. = 17.7 DEGREES REMARK 500 LEU A1258 CA - CB - CG ANGL. DEV. = 15.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 986 -5.15 78.85 REMARK 500 LYS A1040 68.49 -151.28 REMARK 500 ASN A1094 13.05 82.60 REMARK 500 REMARK 500 REMARK: NULL DBREF 4MEE A 840 1286 UNP D7PPP4 D7PPP4_ECOLX 841 1287 SEQADV 4MEE HIS A 818 UNP D7PPP4 EXPRESSION TAG SEQADV 4MEE HIS A 819 UNP D7PPP4 EXPRESSION TAG SEQADV 4MEE HIS A 820 UNP D7PPP4 EXPRESSION TAG SEQADV 4MEE HIS A 821 UNP D7PPP4 EXPRESSION TAG SEQADV 4MEE HIS A 822 UNP D7PPP4 EXPRESSION TAG SEQADV 4MEE HIS A 823 UNP D7PPP4 EXPRESSION TAG SEQADV 4MEE SER A 824 UNP D7PPP4 EXPRESSION TAG SEQADV 4MEE ARG A 825 UNP D7PPP4 EXPRESSION TAG SEQADV 4MEE ARG A 826 UNP D7PPP4 EXPRESSION TAG SEQADV 4MEE SER A 827 UNP D7PPP4 EXPRESSION TAG SEQADV 4MEE PRO A 828 UNP D7PPP4 EXPRESSION TAG SEQADV 4MEE GLU A 829 UNP D7PPP4 EXPRESSION TAG SEQADV 4MEE TYR A 830 UNP D7PPP4 EXPRESSION TAG SEQADV 4MEE PHE A 831 UNP D7PPP4 EXPRESSION TAG SEQADV 4MEE LYS A 832 UNP D7PPP4 EXPRESSION TAG SEQADV 4MEE GLY A 833 UNP D7PPP4 EXPRESSION TAG SEQADV 4MEE PRO A 834 UNP D7PPP4 EXPRESSION TAG SEQADV 4MEE PRO A 835 UNP D7PPP4 EXPRESSION TAG SEQADV 4MEE SER A 836 UNP D7PPP4 EXPRESSION TAG SEQADV 4MEE PRO A 837 UNP D7PPP4 EXPRESSION TAG SEQADV 4MEE ARG A 838 UNP D7PPP4 EXPRESSION TAG SEQADV 4MEE SER A 839 UNP D7PPP4 EXPRESSION TAG SEQADV 4MEE THR A 975 UNP D7PPP4 ALA 976 CONFLICT SEQADV 4MEE ARG A 1008 UNP D7PPP4 LYS 1009 CONFLICT SEQADV 4MEE SER A 1212 UNP D7PPP4 ARG 1213 CONFLICT SEQRES 1 A 469 HIS HIS HIS HIS HIS HIS SER ARG ARG SER PRO GLU TYR SEQRES 2 A 469 PHE LYS GLY PRO PRO SER PRO ARG SER LEU ASN PRO THR SEQRES 3 A 469 LYS GLU SER ALA GLY ASN THR LEU THR VAL SER ASN TYR SEQRES 4 A 469 THR GLY THR PRO GLY SER VAL ILE SER LEU GLY GLY VAL SEQRES 5 A 469 LEU GLU GLY ASP ASN SER LEU THR ASP ARG LEU VAL VAL SEQRES 6 A 469 LYS GLY ASN THR SER GLY GLN SER ASP ILE VAL TYR VAL SEQRES 7 A 469 ASN GLU ASP GLY SER GLY GLY GLN THR ARG ASP GLY ILE SEQRES 8 A 469 ASN ILE ILE SER VAL GLU GLY ASN SER ASP ALA GLU PHE SEQRES 9 A 469 SER LEU LYS ASN ARG VAL VAL ALA GLY ALA TYR ASP TYR SEQRES 10 A 469 THR LEU GLN LYS GLY ASN GLU SER GLY THR ASP ASN LYS SEQRES 11 A 469 GLY TRP TYR LEU THR SER HIS LEU PRO THR SER ASP THR SEQRES 12 A 469 ARG GLN TYR ARG PRO GLU ASN GLY SER TYR ALA THR ASN SEQRES 13 A 469 MET THR LEU ALA ASN SER LEU PHE LEU MET ASP LEU ASN SEQRES 14 A 469 GLU ARG LYS GLN PHE ARG ALA MET SER ASP ASN THR GLN SEQRES 15 A 469 PRO GLU SER ALA SER VAL TRP MET ARG ILE THR GLY GLY SEQRES 16 A 469 ARG SER SER GLY LYS LEU ASN ASP GLY GLN ASN LYS THR SEQRES 17 A 469 THR THR ASN GLN PHE ILE ASN GLN LEU GLY GLY ASP ILE SEQRES 18 A 469 TYR LYS PHE HIS ALA GLU GLN LEU GLY ASP PHE THR LEU SEQRES 19 A 469 GLY ILE MET GLY GLY TYR ALA ASN ALA LYS GLY LYS THR SEQRES 20 A 469 ILE ASN TYR THR SER ASN LYS ALA ALA ARG ASN THR LEU SEQRES 21 A 469 ASP GLY TYR SER VAL GLY VAL TYR GLY THR TRP TYR GLN SEQRES 22 A 469 ASN GLY GLU ASN ALA THR GLY LEU PHE ALA GLU THR TRP SEQRES 23 A 469 MET GLN TYR ASN TRP PHE ASN ALA SER VAL LYS GLY ASP SEQRES 24 A 469 GLY LEU GLU GLU GLU LYS TYR ASN LEU ASN GLY LEU THR SEQRES 25 A 469 ALA SER ALA GLY GLY GLY TYR ASN LEU ASN VAL HIS THR SEQRES 26 A 469 TRP THR SER PRO GLU GLY ILE THR GLY GLU PHE TRP LEU SEQRES 27 A 469 GLN PRO HIS LEU GLN ALA VAL TRP MET GLY VAL THR PRO SEQRES 28 A 469 ASP THR HIS GLN GLU ASP ASN GLY THR VAL VAL GLN GLY SEQRES 29 A 469 ALA GLY LYS ASN ASN ILE GLN THR LYS ALA GLY ILE ARG SEQRES 30 A 469 ALA SER TRP LYS VAL LYS SER THR LEU ASP LYS ASP THR SEQRES 31 A 469 GLY ARG GLU PHE SER PRO TYR ILE GLU ALA ASN TRP ILE SEQRES 32 A 469 HIS ASN THR HIS GLU PHE GLY VAL LYS MET SER ASP ASP SEQRES 33 A 469 SER GLN LEU LEU SER GLY SER ARG ASN GLN GLY GLU ILE SEQRES 34 A 469 LYS THR GLY ILE GLU GLY VAL ILE THR GLN ASN LEU SER SEQRES 35 A 469 VAL ASN GLY GLY VAL ALA TYR GLN ALA GLY GLY HIS GLY SEQRES 36 A 469 SER ASN ALA ILE SER GLY ALA LEU GLY ILE LYS TYR SER SEQRES 37 A 469 PHE HELIX 1 1 PRO A 965 LEU A 980 1 16 SHEET 1 A14 HIS A1042 ALA A1043 0 SHEET 2 A14 GLY A1047 ASN A1066 -1 O GLY A1047 N ALA A1043 SHEET 3 A14 ALA A1072 TYR A1089 -1 O ALA A1073 N THR A1064 SHEET 4 A14 GLY A1097 GLY A1115 -1 O LYS A1114 N ARG A1074 SHEET 5 A14 GLU A1120 THR A1144 -1 O GLY A1127 N ASN A1107 SHEET 6 A14 THR A1150 PRO A1168 -1 O TRP A1163 N ALA A1130 SHEET 7 A14 ILE A1187 LYS A1200 -1 O LYS A1190 N GLN A1160 SHEET 8 A14 TYR A1214 ASN A1222 -1 O ILE A1215 N ALA A1195 SHEET 9 A14 ASN A1242 VAL A1253 -1 O LYS A1247 N GLU A1216 SHEET 10 A14 LEU A1258 ALA A1268 -1 O VAL A1264 N THR A1248 SHEET 11 A14 ASN A1274 TYR A1284 -1 O SER A1277 N ALA A1265 SHEET 12 A14 VAL A1005 LYS A1017 -1 N MET A1007 O ILE A1282 SHEET 13 A14 ASN A1023 TYR A1039 -1 O THR A1025 N GLY A1016 SHEET 14 A14 GLY A1047 ASN A1066 -1 O GLY A1055 N LEU A1034 SHEET 1 B 4 HIS A1171 GLN A1172 0 SHEET 2 B 4 VAL A1178 ALA A1182 -1 O VAL A1179 N HIS A1171 SHEET 3 B 4 GLY A1227 MET A1230 -1 O GLY A1227 N ALA A1182 SHEET 4 B 4 GLN A1235 LEU A1237 -1 O LEU A1236 N VAL A1228 CRYST1 40.330 85.850 134.050 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024795 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011648 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007460 0.00000