PDB Short entry for 4MHG HEADER TRANSCRIPTION/DNA 29-AUG-13 4MHG TITLE CRYSTAL STRUCTURE OF ETV6 BOUND TO A SPECIFIC DNA SEQUENCE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPECIFIC 14 BP DNA; COMPND 3 CHAIN: B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: COMPLEMENTARY SPECIFIC 14 BP DNA; COMPND 7 CHAIN: C; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: TRANSCRIPTION FACTOR ETV6; COMPND 11 CHAIN: A; COMPND 12 FRAGMENT: ETV6 ETS DOMAIN, UNP RESIDUES 329-426; COMPND 13 SYNONYM: ETS TRANSLOCATION VARIANT 6, ETS-RELATED PROTEIN TEL1, TEL; COMPND 14 ENGINEERED: YES; COMPND 15 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 OTHER_DETAILS: CUSTOM OLIGO; SOURCE 6 MOL_ID: 2; SOURCE 7 SYNTHETIC: YES; SOURCE 8 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 9 ORGANISM_TAXID: 32630; SOURCE 10 OTHER_DETAILS: CUSTOM OLIGO; SOURCE 11 MOL_ID: 3; SOURCE 12 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 13 ORGANISM_COMMON: MOUSE; SOURCE 14 ORGANISM_TAXID: 10090; SOURCE 15 GENE: ETV6, TEL, TEL1; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS ETS DOMAIN, TRANSCRIPTION FACTOR, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.C.CHAN,S.DE,H.J.COYNE III,M.OKON,M.E.MURPHY,B.J.GRAVES,L.P.MCINTOSH REVDAT 5 28-FEB-24 4MHG 1 SEQADV REVDAT 4 30-JAN-19 4MHG 1 COMPND SOURCE REVDAT 3 15-NOV-17 4MHG 1 REMARK REVDAT 2 26-MAR-14 4MHG 1 JRNL REVDAT 1 08-JAN-14 4MHG 0 JRNL AUTH S.DE,A.C.CHAN,H.J.COYNE,N.BHACHECH,U.HERMSDORF,M.OKON, JRNL AUTH 2 M.E.MURPHY,B.J.GRAVES,L.P.MCINTOSH JRNL TITL STERIC MECHANISM OF AUTO-INHIBITORY REGULATION OF SPECIFIC JRNL TITL 2 AND NON-SPECIFIC DNA BINDING BY THE ETS TRANSCRIPTIONAL JRNL TITL 3 REPRESSOR ETV6. JRNL REF J.MOL.BIOL. V. 426 1390 2014 JRNL REFN ISSN 0022-2836 JRNL PMID 24333486 JRNL DOI 10.1016/J.JMB.2013.11.031 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.34 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 13290 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 666 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.3420 - 3.7577 0.99 2647 130 0.1523 0.1862 REMARK 3 2 3.7577 - 2.9839 0.99 2508 136 0.1708 0.2200 REMARK 3 3 2.9839 - 2.6071 1.00 2489 136 0.2164 0.2820 REMARK 3 4 2.6071 - 2.3689 1.00 2504 130 0.2043 0.2471 REMARK 3 5 2.3689 - 2.1992 1.00 2476 134 0.2100 0.2498 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.970 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.02 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1498 REMARK 3 ANGLE : 1.325 2148 REMARK 3 CHIRALITY : 0.075 225 REMARK 3 PLANARITY : 0.005 174 REMARK 3 DIHEDRAL : 25.626 616 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 335:344) REMARK 3 ORIGIN FOR THE GROUP (A): 16.1786 -9.2804 9.7043 REMARK 3 T TENSOR REMARK 3 T11: 0.4901 T22: 0.3646 REMARK 3 T33: 0.3216 T12: -0.1172 REMARK 3 T13: 0.0504 T23: -0.0494 REMARK 3 L TENSOR REMARK 3 L11: 9.6224 L22: 7.3440 REMARK 3 L33: 7.1714 L12: -3.3142 REMARK 3 L13: 4.4394 L23: -3.5414 REMARK 3 S TENSOR REMARK 3 S11: -0.0526 S12: -0.7459 S13: -0.3295 REMARK 3 S21: 0.7936 S22: -0.0823 S23: 0.2948 REMARK 3 S31: -0.0962 S32: -0.7560 S33: 0.1559 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 345:351) REMARK 3 ORIGIN FOR THE GROUP (A): 13.0328 -0.2905 1.9857 REMARK 3 T TENSOR REMARK 3 T11: 0.5583 T22: 0.4103 REMARK 3 T33: 0.6626 T12: -0.1415 REMARK 3 T13: -0.0487 T23: -0.0287 REMARK 3 L TENSOR REMARK 3 L11: 7.1940 L22: 7.0700 REMARK 3 L33: 3.7909 L12: 3.1870 REMARK 3 L13: -3.7296 L23: -4.8401 REMARK 3 S TENSOR REMARK 3 S11: -0.5281 S12: -0.3579 S13: 1.1348 REMARK 3 S21: -0.0635 S22: 0.2268 S23: 1.8371 REMARK 3 S31: -0.5141 S32: -0.2793 S33: 0.1515 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 352:366) REMARK 3 ORIGIN FOR THE GROUP (A): 8.9872 -9.1765 -1.7784 REMARK 3 T TENSOR REMARK 3 T11: 0.4357 T22: 0.3217 REMARK 3 T33: 0.6493 T12: -0.1352 REMARK 3 T13: -0.0828 T23: 0.0291 REMARK 3 L TENSOR REMARK 3 L11: 7.1088 L22: 7.3942 REMARK 3 L33: 8.8064 L12: 4.0487 REMARK 3 L13: 0.2308 L23: 0.9612 REMARK 3 S TENSOR REMARK 3 S11: 0.0260 S12: 0.2675 S13: 0.6595 REMARK 3 S21: -0.1404 S22: 0.1671 S23: 1.6576 REMARK 3 S31: -0.1447 S32: -0.8093 S33: -0.2076 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 367:377) REMARK 3 ORIGIN FOR THE GROUP (A): 23.5545 -6.8827 -0.3894 REMARK 3 T TENSOR REMARK 3 T11: 0.4396 T22: 0.2599 REMARK 3 T33: 0.4077 T12: -0.1721 REMARK 3 T13: -0.0342 T23: 0.0446 REMARK 3 L TENSOR REMARK 3 L11: 1.4449 L22: 2.2455 REMARK 3 L33: 1.9263 L12: -0.1208 REMARK 3 L13: 0.2454 L23: -0.4098 REMARK 3 S TENSOR REMARK 3 S11: -0.1677 S12: 0.1300 S13: 0.3764 REMARK 3 S21: -0.2766 S22: -0.2371 S23: -0.3586 REMARK 3 S31: 0.1687 S32: 0.0055 S33: 0.4051 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 378:382) REMARK 3 ORIGIN FOR THE GROUP (A): 28.3718 -6.5608 9.2744 REMARK 3 T TENSOR REMARK 3 T11: 0.6527 T22: 0.4016 REMARK 3 T33: 0.4505 T12: -0.2171 REMARK 3 T13: -0.1678 T23: -0.0050 REMARK 3 L TENSOR REMARK 3 L11: 4.9926 L22: 4.4428 REMARK 3 L33: 3.0301 L12: 2.3318 REMARK 3 L13: 0.6073 L23: -2.8802 REMARK 3 S TENSOR REMARK 3 S11: 0.2233 S12: -0.2434 S13: 0.2701 REMARK 3 S21: 0.8156 S22: -0.0761 S23: -0.1626 REMARK 3 S31: -0.4004 S32: 0.1459 S33: -0.0342 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 383:390) REMARK 3 ORIGIN FOR THE GROUP (A): 28.6831 -13.0651 0.3640 REMARK 3 T TENSOR REMARK 3 T11: 0.5081 T22: 0.2808 REMARK 3 T33: 0.3249 T12: -0.1613 REMARK 3 T13: -0.0582 T23: 0.0684 REMARK 3 L TENSOR REMARK 3 L11: 9.6409 L22: 2.0699 REMARK 3 L33: 6.4721 L12: -1.5553 REMARK 3 L13: 0.9063 L23: 0.1013 REMARK 3 S TENSOR REMARK 3 S11: 0.3408 S12: -0.2133 S13: 0.0506 REMARK 3 S21: -0.1508 S22: -0.1351 S23: -0.2283 REMARK 3 S31: 0.1164 S32: 0.3244 S33: -0.2174 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 391:408) REMARK 3 ORIGIN FOR THE GROUP (A): 16.1277 -21.8173 2.1598 REMARK 3 T TENSOR REMARK 3 T11: 0.4202 T22: 0.2163 REMARK 3 T33: 0.2795 T12: -0.1582 REMARK 3 T13: -0.0226 T23: 0.0231 REMARK 3 L TENSOR REMARK 3 L11: 6.7477 L22: 2.6118 REMARK 3 L33: 5.8869 L12: 0.0529 REMARK 3 L13: 2.8637 L23: 2.9709 REMARK 3 S TENSOR REMARK 3 S11: -0.1570 S12: -0.0918 S13: -0.2257 REMARK 3 S21: -0.4281 S22: 0.1708 S23: 0.2406 REMARK 3 S31: 0.0431 S32: -0.0987 S33: -0.0106 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 409:424) REMARK 3 ORIGIN FOR THE GROUP (A): 10.0193 -16.7572 4.6596 REMARK 3 T TENSOR REMARK 3 T11: 0.3665 T22: 0.2957 REMARK 3 T33: 0.4863 T12: -0.0781 REMARK 3 T13: 0.0208 T23: -0.0157 REMARK 3 L TENSOR REMARK 3 L11: 9.8338 L22: 7.5429 REMARK 3 L33: 8.7365 L12: 1.5082 REMARK 3 L13: -3.4450 L23: 0.6002 REMARK 3 S TENSOR REMARK 3 S11: -0.2807 S12: -0.5803 S13: -0.0342 REMARK 3 S21: 0.3501 S22: 0.0702 S23: 0.9870 REMARK 3 S31: 0.8051 S32: -0.7845 S33: 0.2674 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN B AND RESID 1:5) REMARK 3 ORIGIN FOR THE GROUP (A): 23.7461 -18.4146 -10.5422 REMARK 3 T TENSOR REMARK 3 T11: 0.6407 T22: 0.3377 REMARK 3 T33: 0.2701 T12: -0.1140 REMARK 3 T13: 0.0247 T23: -0.0404 REMARK 3 L TENSOR REMARK 3 L11: 4.5995 L22: 4.0076 REMARK 3 L33: 6.8823 L12: -2.2909 REMARK 3 L13: -1.1981 L23: -3.5316 REMARK 3 S TENSOR REMARK 3 S11: 0.4262 S12: -0.1646 S13: 0.4077 REMARK 3 S21: -0.9950 S22: -0.1880 S23: -0.1967 REMARK 3 S31: 0.2001 S32: 0.7221 S33: -0.1369 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN B AND RESID 6:9) REMARK 3 ORIGIN FOR THE GROUP (A): 27.1895 -29.0827 2.1249 REMARK 3 T TENSOR REMARK 3 T11: 0.4836 T22: 0.2649 REMARK 3 T33: 0.4021 T12: -0.1315 REMARK 3 T13: 0.0132 T23: 0.0192 REMARK 3 L TENSOR REMARK 3 L11: 7.3290 L22: 3.3485 REMARK 3 L33: 7.6241 L12: -0.5506 REMARK 3 L13: 2.9776 L23: -0.9641 REMARK 3 S TENSOR REMARK 3 S11: 0.3811 S12: -0.4732 S13: -0.9338 REMARK 3 S21: 0.1349 S22: 0.0635 S23: -0.6479 REMARK 3 S31: 0.4602 S32: -0.0362 S33: -0.7227 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN B AND RESID 10:14) REMARK 3 ORIGIN FOR THE GROUP (A): 33.2362 -17.6989 15.5316 REMARK 3 T TENSOR REMARK 3 T11: 0.6671 T22: 0.6376 REMARK 3 T33: 0.3875 T12: -0.2343 REMARK 3 T13: -0.0568 T23: 0.0003 REMARK 3 L TENSOR REMARK 3 L11: 2.4123 L22: 3.4031 REMARK 3 L33: 5.5584 L12: -0.6522 REMARK 3 L13: -0.7378 L23: 4.3551 REMARK 3 S TENSOR REMARK 3 S11: 0.1619 S12: -0.7239 S13: 0.4300 REMARK 3 S21: 0.9923 S22: 0.4138 S23: -1.2510 REMARK 3 S31: -0.3736 S32: 0.5459 S33: -0.5880 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN C AND RESID 1:5) REMARK 3 ORIGIN FOR THE GROUP (A): 29.1674 -22.9652 20.9200 REMARK 3 T TENSOR REMARK 3 T11: 0.5061 T22: 0.5325 REMARK 3 T33: 0.2557 T12: -0.1688 REMARK 3 T13: -0.0135 T23: -0.0047 REMARK 3 L TENSOR REMARK 3 L11: 8.6246 L22: 5.5609 REMARK 3 L33: 7.2087 L12: -4.7202 REMARK 3 L13: 6.6095 L23: -4.3156 REMARK 3 S TENSOR REMARK 3 S11: 0.4124 S12: -0.2851 S13: -0.7689 REMARK 3 S21: -0.7153 S22: 0.5584 S23: 0.2284 REMARK 3 S31: 1.0149 S32: 0.2196 S33: -0.8292 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: (CHAIN C AND RESID 6:10) REMARK 3 ORIGIN FOR THE GROUP (A): 31.2643 -20.5050 3.8662 REMARK 3 T TENSOR REMARK 3 T11: 0.4892 T22: 0.3432 REMARK 3 T33: 0.3717 T12: -0.2044 REMARK 3 T13: 0.0521 T23: 0.0412 REMARK 3 L TENSOR REMARK 3 L11: 1.8577 L22: 2.3811 REMARK 3 L33: 2.7672 L12: 0.6498 REMARK 3 L13: 2.0824 L23: 1.7451 REMARK 3 S TENSOR REMARK 3 S11: -0.0547 S12: 0.1560 S13: 0.0006 REMARK 3 S21: -0.5221 S22: 0.3125 S23: -0.4757 REMARK 3 S31: -0.2988 S32: 0.5253 S33: -0.1899 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: (CHAIN C AND RESID 11:14) REMARK 3 ORIGIN FOR THE GROUP (A): 26.9956 -27.6291 -10.6751 REMARK 3 T TENSOR REMARK 3 T11: 0.8616 T22: 0.5771 REMARK 3 T33: 0.6036 T12: -0.0375 REMARK 3 T13: -0.1023 T23: -0.2211 REMARK 3 L TENSOR REMARK 3 L11: 5.9349 L22: 3.3319 REMARK 3 L33: 4.8676 L12: -3.7421 REMARK 3 L13: 4.2089 L23: -4.0007 REMARK 3 S TENSOR REMARK 3 S11: 1.7214 S12: 1.8602 S13: -2.7563 REMARK 3 S21: -1.9844 S22: 0.4821 S23: 0.5548 REMARK 3 S31: 0.1728 S32: 1.7370 S33: -1.8925 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4MHG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-OCT-13. REMARK 100 THE DEPOSITION ID IS D_1000081915. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JAN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9753 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13307 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.199 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 7.900 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.10 REMARK 200 R MERGE FOR SHELL (I) : 0.71100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% PEG 8000, 50 MM SODIUM CACODYLATE, REMARK 280 100 MM NH4AC, 10 MM MGCL2, PH 6.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.49367 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 86.98733 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 86.98733 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 43.49367 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 325 REMARK 465 SER A 326 REMARK 465 HIS A 327 REMARK 465 MET A 328 REMARK 465 GLY A 329 REMARK 465 ARG A 330 REMARK 465 ILE A 331 REMARK 465 ALA A 332 REMARK 465 ASP A 333 REMARK 465 SER A 334 REMARK 465 GLY A 425 REMARK 465 ARG A 426 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC B 3 C1' - O4' - C4' ANGL. DEV. = -6.6 DEGREES REMARK 500 DG B 6 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DG B 6 O4' - C1' - N9 ANGL. DEV. = 3.2 DEGREES REMARK 500 DG B 14 O4' - C1' - N9 ANGL. DEV. = 3.3 DEGREES REMARK 500 DT C 1 O4' - C1' - N1 ANGL. DEV. = -5.2 DEGREES REMARK 500 DT C 3 O4' - C1' - N1 ANGL. DEV. = -4.3 DEGREES REMARK 500 DC C 4 O4' - C1' - N1 ANGL. DEV. = -5.2 DEGREES REMARK 500 DT C 7 O4' - C1' - N1 ANGL. DEV. = -6.3 DEGREES REMARK 500 DT C 8 O4' - C1' - N1 ANGL. DEV. = -5.0 DEGREES REMARK 500 DG C 11 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 DG C 12 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2LF8 RELATED DB: PDB REMARK 900 RELATED ID: 2LF7 RELATED DB: PDB DBREF 4MHG A 329 426 UNP P97360 ETV6_MOUSE 329 426 DBREF 4MHG B 1 14 PDB 4MHG 4MHG 1 14 DBREF 4MHG C 1 14 PDB 4MHG 4MHG 1 14 SEQADV 4MHG GLY A 325 UNP P97360 EXPRESSION TAG SEQADV 4MHG SER A 326 UNP P97360 EXPRESSION TAG SEQADV 4MHG HIS A 327 UNP P97360 EXPRESSION TAG SEQADV 4MHG MET A 328 UNP P97360 EXPRESSION TAG SEQADV 4MHG SER A 334 UNP P97360 CYS 334 ENGINEERED MUTATION SEQRES 1 B 14 DA DA DC DC DC DG DG DA DA DG DT DG DA SEQRES 2 B 14 DG SEQRES 1 C 14 DT DC DT DC DA DC DT DT DC DC DG DG DG SEQRES 2 C 14 DT SEQRES 1 A 102 GLY SER HIS MET GLY ARG ILE ALA ASP SER ARG LEU LEU SEQRES 2 A 102 TRP ASP TYR VAL TYR GLN LEU LEU SER ASP SER ARG TYR SEQRES 3 A 102 GLU ASN PHE ILE ARG TRP GLU ASP LYS GLU SER LYS ILE SEQRES 4 A 102 PHE ARG ILE VAL ASP PRO ASN GLY LEU ALA ARG LEU TRP SEQRES 5 A 102 GLY ASN HIS LYS ASN ARG THR ASN MET THR TYR GLU LYS SEQRES 6 A 102 MET SER ARG ALA LEU ARG HIS TYR TYR LYS LEU ASN ILE SEQRES 7 A 102 ILE ARG LYS GLU PRO GLY GLN ARG LEU LEU PHE ARG PHE SEQRES 8 A 102 MET LYS THR PRO ASP GLU ILE MET SER GLY ARG FORMUL 4 HOH *124(H2 O) HELIX 1 1 LEU A 336 SER A 346 1 11 HELIX 2 2 ASP A 347 GLU A 351 5 5 HELIX 3 3 ASP A 368 LYS A 380 1 13 HELIX 4 4 THR A 386 LEU A 400 1 15 HELIX 5 5 THR A 418 MET A 423 1 6 SHEET 1 A 4 ILE A 354 ASP A 358 0 SHEET 2 A 4 ILE A 363 ILE A 366 -1 O ILE A 363 N GLU A 357 SHEET 3 A 4 LEU A 412 PHE A 415 -1 O PHE A 413 N PHE A 364 SHEET 4 A 4 ILE A 403 LYS A 405 -1 N ARG A 404 O ARG A 414 CRYST1 57.582 57.582 130.481 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017367 0.010027 0.000000 0.00000 SCALE2 0.000000 0.020053 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007664 0.00000