PDB Short entry for 4MQP HEADER TRANSFERASE 16-SEP-13 4MQP TITLE MYCOBATERIUM TUBERCULOSIS TRANSAMINASE BIOA COMPLEXED WITH 2- TITLE 2 HYDRAZINYLBENZO[D]THIAZOLE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENOSYLMETHIONINE-8-AMINO-7-OXONONANOATE AMINOTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 7,8-DIAMINO-PELARGONIC ACID AMINOTRANSFERASE, DAPA AT, DAPA COMPND 5 AMINOTRANSFERASE, 7,8-DIAMINONONANOATE SYNTHASE, DANS, COMPND 6 DIAMINOPELARGONIC ACID SYNTHASE; COMPND 7 EC: 2.6.1.62; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: BIOA, RV1568, MT1619, MTCY336.35C; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PLP, TRANSAMINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR B.C.FINZEL,R.DAI REVDAT 2 19-MAR-14 4MQP 1 JRNL REVDAT 1 05-MAR-14 4MQP 0 JRNL AUTH R.DAI,D.J.WILSON,T.W.GEDERS,C.C.ALDRICH,B.C.FINZEL JRNL TITL INHIBITION OF MYCOBACTERIUM TUBERCULOSIS TRANSAMINASE BIOA JRNL TITL 2 BY ARYL HYDRAZINES AND HYDRAZIDES. JRNL REF CHEMBIOCHEM V. 15 575 2014 JRNL REFN ISSN 1439-4227 JRNL PMID 24482078 JRNL DOI 10.1002/CBIC.201300748 REMARK 2 REMARK 2 RESOLUTION. 1.83 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.83 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 100.93 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 69970 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3725 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.83 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.88 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4651 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.69 REMARK 3 BIN R VALUE (WORKING SET) : 0.2310 REMARK 3 BIN FREE R VALUE SET COUNT : 283 REMARK 3 BIN FREE R VALUE : 0.2810 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6378 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 71 REMARK 3 SOLVENT ATOMS : 472 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.21000 REMARK 3 B22 (A**2) : 0.27000 REMARK 3 B33 (A**2) : -0.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.136 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.123 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.082 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.630 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6797 ; 0.009 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9327 ; 1.336 ; 1.955 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 898 ; 5.694 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 258 ;33.989 ;22.209 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 979 ;13.148 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 51 ;13.265 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1064 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5235 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4MQP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-SEP-13. REMARK 100 THE RCSB ID CODE IS RCSB082246. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 69970 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.830 REMARK 200 RESOLUTION RANGE LOW (A) : 100.930 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.83 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3TFT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN: 25 MM HEPES PH 7.5, 50 MM REMARK 280 NACL, 0.1 MM TCEP RESERVOIR:10% PEG 8000, 0.1M MAGNESIUM REMARK 280 CHLORIDE, 0.1M HEPES PH 7.5 CRYO: 15% PEG 400 IN RESERVOIR REMARK 280 SOLUTION, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.51050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 100.98200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.95750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 100.98200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.51050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.95750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -75.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 ALA A 4 REMARK 465 THR A 5 REMARK 465 GLY A 6 REMARK 465 GLY A 7 REMARK 465 LEU A 436 REMARK 465 PRO A 437 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ALA B 3 REMARK 465 ALA B 4 REMARK 465 THR B 5 REMARK 465 GLY B 6 REMARK 465 GLY B 7 REMARK 465 SER B 435 REMARK 465 LEU B 436 REMARK 465 PRO B 437 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 31 CB CG CD OE1 OE2 REMARK 470 MET A 174 CG SD CE REMARK 470 HIS A 175 CB CG ND1 CD2 CE1 NE2 REMARK 470 ARG B 30 CZ NH1 NH2 REMARK 470 GLU B 31 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 407 O HOH A 782 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS B 42 CG HIS B 42 CD2 0.058 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 31 -105.14 14.20 REMARK 500 VAL A 33 105.57 63.18 REMARK 500 TRP A 65 -5.55 81.30 REMARK 500 MET A 87 109.67 -166.38 REMARK 500 HIS A 89 133.68 -178.02 REMARK 500 MET A 174 67.78 174.03 REMARK 500 HIS A 175 -132.05 -107.28 REMARK 500 SER A 176 -71.47 56.21 REMARK 500 THR A 179 -45.87 -24.29 REMARK 500 VAL A 222 -50.03 71.99 REMARK 500 LYS A 283 -94.08 47.92 REMARK 500 ARG A 403 -128.26 50.41 REMARK 500 MET B 87 107.70 -167.06 REMARK 500 VAL B 222 -49.83 72.30 REMARK 500 LYS B 283 -99.86 44.08 REMARK 500 ALA B 373 46.57 -91.23 REMARK 500 ARG B 403 -130.19 47.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 841 DISTANCE = 5.67 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2B1 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2B1 B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4MQN RELATED DB: PDB REMARK 900 RELATED ID: 4MQO RELATED DB: PDB REMARK 900 RELATED ID: 4MQQ RELATED DB: PDB REMARK 900 RELATED ID: 4MQR RELATED DB: PDB DBREF 4MQP A 1 437 UNP P0A4X6 BIOA_MYCTU 1 437 DBREF 4MQP B 1 437 UNP P0A4X6 BIOA_MYCTU 1 437 SEQADV 4MQP MET A -19 UNP P0A4X6 INITIATING METHIONINE SEQADV 4MQP GLY A -18 UNP P0A4X6 EXPRESSION TAG SEQADV 4MQP SER A -17 UNP P0A4X6 EXPRESSION TAG SEQADV 4MQP SER A -16 UNP P0A4X6 EXPRESSION TAG SEQADV 4MQP HIS A -15 UNP P0A4X6 EXPRESSION TAG SEQADV 4MQP HIS A -14 UNP P0A4X6 EXPRESSION TAG SEQADV 4MQP HIS A -13 UNP P0A4X6 EXPRESSION TAG SEQADV 4MQP HIS A -12 UNP P0A4X6 EXPRESSION TAG SEQADV 4MQP HIS A -11 UNP P0A4X6 EXPRESSION TAG SEQADV 4MQP HIS A -10 UNP P0A4X6 EXPRESSION TAG SEQADV 4MQP SER A -9 UNP P0A4X6 EXPRESSION TAG SEQADV 4MQP SER A -8 UNP P0A4X6 EXPRESSION TAG SEQADV 4MQP GLY A -7 UNP P0A4X6 EXPRESSION TAG SEQADV 4MQP LEU A -6 UNP P0A4X6 EXPRESSION TAG SEQADV 4MQP VAL A -5 UNP P0A4X6 EXPRESSION TAG SEQADV 4MQP PRO A -4 UNP P0A4X6 EXPRESSION TAG SEQADV 4MQP ARG A -3 UNP P0A4X6 EXPRESSION TAG SEQADV 4MQP GLY A -2 UNP P0A4X6 EXPRESSION TAG SEQADV 4MQP SER A -1 UNP P0A4X6 EXPRESSION TAG SEQADV 4MQP HIS A 0 UNP P0A4X6 EXPRESSION TAG SEQADV 4MQP MET B -19 UNP P0A4X6 INITIATING METHIONINE SEQADV 4MQP GLY B -18 UNP P0A4X6 EXPRESSION TAG SEQADV 4MQP SER B -17 UNP P0A4X6 EXPRESSION TAG SEQADV 4MQP SER B -16 UNP P0A4X6 EXPRESSION TAG SEQADV 4MQP HIS B -15 UNP P0A4X6 EXPRESSION TAG SEQADV 4MQP HIS B -14 UNP P0A4X6 EXPRESSION TAG SEQADV 4MQP HIS B -13 UNP P0A4X6 EXPRESSION TAG SEQADV 4MQP HIS B -12 UNP P0A4X6 EXPRESSION TAG SEQADV 4MQP HIS B -11 UNP P0A4X6 EXPRESSION TAG SEQADV 4MQP HIS B -10 UNP P0A4X6 EXPRESSION TAG SEQADV 4MQP SER B -9 UNP P0A4X6 EXPRESSION TAG SEQADV 4MQP SER B -8 UNP P0A4X6 EXPRESSION TAG SEQADV 4MQP GLY B -7 UNP P0A4X6 EXPRESSION TAG SEQADV 4MQP LEU B -6 UNP P0A4X6 EXPRESSION TAG SEQADV 4MQP VAL B -5 UNP P0A4X6 EXPRESSION TAG SEQADV 4MQP PRO B -4 UNP P0A4X6 EXPRESSION TAG SEQADV 4MQP ARG B -3 UNP P0A4X6 EXPRESSION TAG SEQADV 4MQP GLY B -2 UNP P0A4X6 EXPRESSION TAG SEQADV 4MQP SER B -1 UNP P0A4X6 EXPRESSION TAG SEQADV 4MQP HIS B 0 UNP P0A4X6 EXPRESSION TAG SEQRES 1 A 457 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 457 LEU VAL PRO ARG GLY SER HIS MET ALA ALA ALA THR GLY SEQRES 3 A 457 GLY LEU THR PRO GLU GLN ILE ILE ALA VAL ASP GLY ALA SEQRES 4 A 457 HIS LEU TRP HIS PRO TYR SER SER ILE GLY ARG GLU ALA SEQRES 5 A 457 VAL SER PRO VAL VAL ALA VAL ALA ALA HIS GLY ALA TRP SEQRES 6 A 457 LEU THR LEU ILE ARG ASP GLY GLN PRO ILE GLU VAL LEU SEQRES 7 A 457 ASP ALA MET SER SER TRP TRP THR ALA ILE HIS GLY HIS SEQRES 8 A 457 GLY HIS PRO ALA LEU ASP GLN ALA LEU THR THR GLN LEU SEQRES 9 A 457 ARG VAL MET ASN HIS VAL MET PHE GLY GLY LEU THR HIS SEQRES 10 A 457 GLU PRO ALA ALA ARG LEU ALA LYS LEU LEU VAL ASP ILE SEQRES 11 A 457 THR PRO ALA GLY LEU ASP THR VAL PHE PHE SER ASP SER SEQRES 12 A 457 GLY SER VAL SER VAL GLU VAL ALA ALA LYS MET ALA LEU SEQRES 13 A 457 GLN TYR TRP ARG GLY ARG GLY LEU PRO GLY LYS ARG ARG SEQRES 14 A 457 LEU MET THR TRP ARG GLY GLY TYR HIS GLY ASP THR PHE SEQRES 15 A 457 LEU ALA MET SER ILE CYS ASP PRO HIS GLY GLY MET HIS SEQRES 16 A 457 SER LEU TRP THR ASP VAL LEU ALA ALA GLN VAL PHE ALA SEQRES 17 A 457 PRO GLN VAL PRO ARG ASP TYR ASP PRO ALA TYR SER ALA SEQRES 18 A 457 ALA PHE GLU ALA GLN LEU ALA GLN HIS ALA GLY GLU LEU SEQRES 19 A 457 ALA ALA VAL VAL VAL GLU PRO VAL VAL GLN GLY ALA GLY SEQRES 20 A 457 GLY MET ARG PHE HIS ASP PRO ARG TYR LEU HIS ASP LEU SEQRES 21 A 457 ARG ASP ILE CYS ARG ARG TYR GLU VAL LEU LEU ILE PHE SEQRES 22 A 457 ASP GLU ILE ALA THR GLY PHE GLY ARG THR GLY ALA LEU SEQRES 23 A 457 PHE ALA ALA ASP HIS ALA GLY VAL SER PRO ASP ILE MET SEQRES 24 A 457 CYS VAL GLY LYS ALA LEU THR GLY GLY TYR LEU SER LEU SEQRES 25 A 457 ALA ALA THR LEU CYS THR ALA ASP VAL ALA HIS THR ILE SEQRES 26 A 457 SER ALA GLY ALA ALA GLY ALA LEU MET HIS GLY PRO THR SEQRES 27 A 457 PHE MET ALA ASN PRO LEU ALA CYS ALA VAL SER VAL ALA SEQRES 28 A 457 SER VAL GLU LEU LEU LEU GLY GLN ASP TRP ARG THR ARG SEQRES 29 A 457 ILE THR GLU LEU ALA ALA GLY LEU THR ALA GLY LEU ASP SEQRES 30 A 457 THR ALA ARG ALA LEU PRO ALA VAL THR ASP VAL ARG VAL SEQRES 31 A 457 CYS GLY ALA ILE GLY VAL ILE GLU CYS ASP ARG PRO VAL SEQRES 32 A 457 ASP LEU ALA VAL ALA THR PRO ALA ALA LEU ASP ARG GLY SEQRES 33 A 457 VAL TRP LEU ARG PRO PHE ARG ASN LEU VAL TYR ALA MET SEQRES 34 A 457 PRO PRO TYR ILE CYS THR PRO ALA GLU ILE THR GLN ILE SEQRES 35 A 457 THR SER ALA MET VAL GLU VAL ALA ARG LEU VAL GLY SER SEQRES 36 A 457 LEU PRO SEQRES 1 B 457 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 457 LEU VAL PRO ARG GLY SER HIS MET ALA ALA ALA THR GLY SEQRES 3 B 457 GLY LEU THR PRO GLU GLN ILE ILE ALA VAL ASP GLY ALA SEQRES 4 B 457 HIS LEU TRP HIS PRO TYR SER SER ILE GLY ARG GLU ALA SEQRES 5 B 457 VAL SER PRO VAL VAL ALA VAL ALA ALA HIS GLY ALA TRP SEQRES 6 B 457 LEU THR LEU ILE ARG ASP GLY GLN PRO ILE GLU VAL LEU SEQRES 7 B 457 ASP ALA MET SER SER TRP TRP THR ALA ILE HIS GLY HIS SEQRES 8 B 457 GLY HIS PRO ALA LEU ASP GLN ALA LEU THR THR GLN LEU SEQRES 9 B 457 ARG VAL MET ASN HIS VAL MET PHE GLY GLY LEU THR HIS SEQRES 10 B 457 GLU PRO ALA ALA ARG LEU ALA LYS LEU LEU VAL ASP ILE SEQRES 11 B 457 THR PRO ALA GLY LEU ASP THR VAL PHE PHE SER ASP SER SEQRES 12 B 457 GLY SER VAL SER VAL GLU VAL ALA ALA LYS MET ALA LEU SEQRES 13 B 457 GLN TYR TRP ARG GLY ARG GLY LEU PRO GLY LYS ARG ARG SEQRES 14 B 457 LEU MET THR TRP ARG GLY GLY TYR HIS GLY ASP THR PHE SEQRES 15 B 457 LEU ALA MET SER ILE CYS ASP PRO HIS GLY GLY MET HIS SEQRES 16 B 457 SER LEU TRP THR ASP VAL LEU ALA ALA GLN VAL PHE ALA SEQRES 17 B 457 PRO GLN VAL PRO ARG ASP TYR ASP PRO ALA TYR SER ALA SEQRES 18 B 457 ALA PHE GLU ALA GLN LEU ALA GLN HIS ALA GLY GLU LEU SEQRES 19 B 457 ALA ALA VAL VAL VAL GLU PRO VAL VAL GLN GLY ALA GLY SEQRES 20 B 457 GLY MET ARG PHE HIS ASP PRO ARG TYR LEU HIS ASP LEU SEQRES 21 B 457 ARG ASP ILE CYS ARG ARG TYR GLU VAL LEU LEU ILE PHE SEQRES 22 B 457 ASP GLU ILE ALA THR GLY PHE GLY ARG THR GLY ALA LEU SEQRES 23 B 457 PHE ALA ALA ASP HIS ALA GLY VAL SER PRO ASP ILE MET SEQRES 24 B 457 CYS VAL GLY LYS ALA LEU THR GLY GLY TYR LEU SER LEU SEQRES 25 B 457 ALA ALA THR LEU CYS THR ALA ASP VAL ALA HIS THR ILE SEQRES 26 B 457 SER ALA GLY ALA ALA GLY ALA LEU MET HIS GLY PRO THR SEQRES 27 B 457 PHE MET ALA ASN PRO LEU ALA CYS ALA VAL SER VAL ALA SEQRES 28 B 457 SER VAL GLU LEU LEU LEU GLY GLN ASP TRP ARG THR ARG SEQRES 29 B 457 ILE THR GLU LEU ALA ALA GLY LEU THR ALA GLY LEU ASP SEQRES 30 B 457 THR ALA ARG ALA LEU PRO ALA VAL THR ASP VAL ARG VAL SEQRES 31 B 457 CYS GLY ALA ILE GLY VAL ILE GLU CYS ASP ARG PRO VAL SEQRES 32 B 457 ASP LEU ALA VAL ALA THR PRO ALA ALA LEU ASP ARG GLY SEQRES 33 B 457 VAL TRP LEU ARG PRO PHE ARG ASN LEU VAL TYR ALA MET SEQRES 34 B 457 PRO PRO TYR ILE CYS THR PRO ALA GLU ILE THR GLN ILE SEQRES 35 B 457 THR SER ALA MET VAL GLU VAL ALA ARG LEU VAL GLY SER SEQRES 36 B 457 LEU PRO HET 2B1 A 501 26 HET EDO A 502 4 HET EDO A 503 4 HET 2B1 B 501 26 HET EDO B 502 4 HET PEG B 503 7 HETNAM 2B1 (4-{[(E)-1,3-BENZOTHIAZOL-2-YLDIAZENYL]METHYL}-5- HETNAM 2 2B1 HYDROXY-6-METHYLPYRIDIN-3-YL)METHYL DIHYDROGEN HETNAM 3 2B1 PHOSPHATE HETNAM EDO 1,2-ETHANEDIOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN EDO ETHYLENE GLYCOL FORMUL 3 2B1 2(C15 H15 N4 O5 P S) FORMUL 4 EDO 3(C2 H6 O2) FORMUL 8 PEG C4 H10 O3 FORMUL 9 HOH *472(H2 O) HELIX 1 1 THR A 9 LEU A 21 1 13 HELIX 2 2 MET A 61 THR A 66 1 6 HELIX 3 3 HIS A 73 MET A 87 1 15 HELIX 4 4 HIS A 97 THR A 111 1 15 HELIX 5 5 SER A 123 GLY A 141 1 19 HELIX 6 6 THR A 161 SER A 166 1 6 HELIX 7 7 ASP A 196 ALA A 211 1 16 HELIX 8 8 PRO A 234 GLU A 248 1 15 HELIX 9 9 PHE A 267 ALA A 272 5 6 HELIX 10 10 GLY A 282 GLY A 287 5 6 HELIX 11 11 ALA A 299 GLY A 308 1 10 HELIX 12 12 ASN A 322 GLY A 338 1 17 HELIX 13 13 ASP A 340 ASP A 357 1 18 HELIX 14 14 THR A 358 LEU A 362 5 5 HELIX 15 15 ASP A 384 ARG A 395 1 12 HELIX 16 16 THR A 415 GLY A 434 1 20 HELIX 17 17 THR B 9 LEU B 21 1 13 HELIX 18 18 MET B 61 THR B 66 1 6 HELIX 19 19 HIS B 73 MET B 87 1 15 HELIX 20 20 HIS B 97 THR B 111 1 15 HELIX 21 21 SER B 123 ARG B 142 1 20 HELIX 22 22 THR B 161 SER B 166 1 6 HELIX 23 23 HIS B 175 LEU B 182 5 8 HELIX 24 24 ASP B 196 ALA B 211 1 16 HELIX 25 25 PRO B 234 GLU B 248 1 15 HELIX 26 26 PHE B 267 ALA B 272 5 6 HELIX 27 27 GLY B 282 GLY B 287 5 6 HELIX 28 28 ALA B 299 ALA B 307 1 9 HELIX 29 29 ASN B 322 GLY B 338 1 17 HELIX 30 30 ASP B 340 ASP B 357 1 18 HELIX 31 31 THR B 358 ARG B 360 5 3 HELIX 32 32 ASP B 384 ASP B 394 1 11 HELIX 33 33 THR B 415 GLY B 434 1 20 SHEET 1 A 5 VAL A 397 TRP A 398 0 SHEET 2 A 5 GLN A 53 ASP A 59 1 N LEU A 58 O TRP A 398 SHEET 3 A 5 TRP A 45 ARG A 50 -1 N LEU A 46 O VAL A 57 SHEET 4 A 5 VAL A 36 HIS A 42 -1 N ALA A 40 O THR A 47 SHEET 5 A 5 LEU B 95 THR B 96 1 O THR B 96 N ALA A 38 SHEET 1 B 5 LEU A 95 THR A 96 0 SHEET 2 B 5 VAL B 36 HIS B 42 1 O ALA B 38 N THR A 96 SHEET 3 B 5 TRP B 45 ARG B 50 -1 O THR B 47 N VAL B 39 SHEET 4 B 5 GLN B 53 ASP B 59 -1 O VAL B 57 N LEU B 46 SHEET 5 B 5 VAL B 397 TRP B 398 1 O TRP B 398 N LEU B 58 SHEET 1 C 7 LEU A 115 SER A 121 0 SHEET 2 C 7 ALA A 293 THR A 298 -1 O THR A 295 N PHE A 119 SHEET 3 C 7 ILE A 278 VAL A 281 -1 N MET A 279 O LEU A 296 SHEET 4 C 7 LEU A 250 ASP A 254 1 N PHE A 253 O CYS A 280 SHEET 5 C 7 LEU A 214 VAL A 219 1 N VAL A 217 O ILE A 252 SHEET 6 C 7 ARG A 149 TRP A 153 1 N ARG A 149 O ALA A 215 SHEET 7 C 7 VAL A 186 ALA A 188 1 O ALA A 188 N THR A 152 SHEET 1 D 2 VAL A 223 GLN A 224 0 SHEET 2 D 2 ARG A 230 PHE A 231 -1 O ARG A 230 N GLN A 224 SHEET 1 E 3 VAL A 365 VAL A 370 0 SHEET 2 E 3 GLY A 375 CYS A 379 -1 O VAL A 376 N ARG A 369 SHEET 3 E 3 LEU A 405 ALA A 408 -1 O VAL A 406 N ILE A 377 SHEET 1 F 7 LEU B 115 SER B 121 0 SHEET 2 F 7 ALA B 293 THR B 298 -1 O THR B 295 N PHE B 119 SHEET 3 F 7 ILE B 278 VAL B 281 -1 N MET B 279 O LEU B 296 SHEET 4 F 7 LEU B 250 ASP B 254 1 N PHE B 253 O CYS B 280 SHEET 5 F 7 LEU B 214 VAL B 219 1 N VAL B 217 O ILE B 252 SHEET 6 F 7 ARG B 149 TRP B 153 1 N ARG B 149 O ALA B 215 SHEET 7 F 7 VAL B 186 ALA B 188 1 O VAL B 186 N LEU B 150 SHEET 1 G 2 VAL B 223 GLN B 224 0 SHEET 2 G 2 ARG B 230 PHE B 231 -1 O ARG B 230 N GLN B 224 SHEET 1 H 3 VAL B 365 VAL B 370 0 SHEET 2 H 3 GLY B 375 CYS B 379 -1 O GLU B 378 N ASP B 367 SHEET 3 H 3 LEU B 405 ALA B 408 -1 O VAL B 406 N ILE B 377 CISPEP 1 GLU A 31 ALA A 32 0 -10.18 CISPEP 2 HIS A 171 GLY A 172 0 2.93 SITE 1 AC1 19 TRP A 64 TRP A 65 GLY A 124 SER A 125 SITE 2 AC1 19 TYR A 157 HIS A 158 GLY A 159 GLU A 220 SITE 3 AC1 19 ALA A 226 ASP A 254 ILE A 256 LYS A 283 SITE 4 AC1 19 TYR A 407 HOH A 609 HOH A 626 HOH A 804 SITE 5 AC1 19 PRO B 317 THR B 318 HOH B 687 SITE 1 AC2 4 HIS A 232 HOH A 725 HOH A 765 HOH A 766 SITE 1 AC3 1 GLU A 56 SITE 1 AC4 23 GLY A 316 PRO A 317 THR A 318 TRP B 65 SITE 2 AC4 23 GLY B 124 SER B 125 TYR B 157 HIS B 158 SITE 3 AC4 23 GLY B 159 GLU B 220 ALA B 226 ASP B 254 SITE 4 AC4 23 ILE B 256 LYS B 283 PHE B 402 TYR B 407 SITE 5 AC4 23 HOH B 603 HOH B 613 HOH B 628 HOH B 634 SITE 6 AC4 23 HOH B 684 HOH B 695 HOH B 724 SITE 1 AC5 2 ALA B 183 ALA B 184 SITE 1 AC6 5 ARG B 193 HIS B 232 ASP B 233 HOH B 723 SITE 2 AC6 5 HOH B 765 CRYST1 63.021 65.915 201.964 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015868 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015171 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004951 0.00000