PDB Short entry for 4MYW HEADER VIRAL PROTEIN/CELL ADHESION 28-SEP-13 4MYW TITLE STRUCTURE OF HSV-2 GD BOUND TO NECTIN-1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENVELOPE GLYCOPROTEIN D; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: UNP RESIDUES 26-310; COMPND 5 SYNONYM: GD; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: POLIOVIRUS RECEPTOR-RELATED PROTEIN 1; COMPND 9 CHAIN: B, D; COMPND 10 FRAGMENT: UNP RESIDUES 30-335; COMPND 11 SYNONYM: HERPES VIRUS ENTRY MEDIATOR C, HERPESVIRUS ENTRY MEDIATOR C, COMPND 12 HVEC, HERPESVIRUS IG-LIKE RECEPTOR, HIGR, NECTIN-1; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN HERPESVIRUS 2; SOURCE 3 ORGANISM_COMMON: HHV-2; SOURCE 4 ORGANISM_TAXID: 10313; SOURCE 5 STRAIN: 333; SOURCE 6 GENE: GD, US6; SOURCE 7 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 8 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 10 EXPRESSION_SYSTEM_CELL_LINE: BTI-TN-5B1-4; SOURCE 11 EXPRESSION_SYSTEM_CELL: HIGH5; SOURCE 12 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 13 EXPRESSION_SYSTEM_PLASMID: PFAST-BAC1; SOURCE 14 MOL_ID: 2; SOURCE 15 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 16 ORGANISM_COMMON: HUMAN; SOURCE 17 ORGANISM_TAXID: 9606; SOURCE 18 GENE: HVEC, NECTIN-1, PRR1, PVRL1; SOURCE 19 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 20 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 21 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 22 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 23 EXPRESSION_SYSTEM_PLASMID: PET-21B KEYWDS IGV-LIKE CORE, N-/C-TERMINAL EXTENSIONS, TANDEM ARRANGED V-C-C IG- KEYWDS 2 LIKE DOMAINS, RECEPTOR BINDING, CELL SURFACE ATTACHMENT, VIRAL, KEYWDS 3 CELLULAR SURFACE, VIRAL PROTEIN-CELL ADHESION COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR G.LU,N.ZHANG,J.QI,Y.LI,Z.CHEN,C.ZHENG,J.YAN,G.F.GAO REVDAT 3 24-AUG-22 4MYW 1 JRNL HETSYN REVDAT 2 29-JUL-20 4MYW 1 COMPND REMARK SEQADV HETNAM REVDAT 2 2 1 LINK SITE ATOM REVDAT 1 01-OCT-14 4MYW 0 JRNL AUTH G.LU,N.ZHANG,J.QI,Y.LI,Z.CHEN,C.ZHENG,G.F.GAO,J.YAN JRNL TITL CRYSTAL STRUCTURE OF HERPES SIMPLEX VIRUS 2 GD BOUND TO JRNL TITL 2 NECTIN-1 REVEALS A CONSERVED MODE OF RECEPTOR RECOGNITION. JRNL REF J.VIROL. V. 88 13678 2014 JRNL REFN ESSN 1098-5514 JRNL PMID 25231300 JRNL DOI 10.1128/JVI.01906-14 REMARK 2 REMARK 2 RESOLUTION. 3.19 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.5_2) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.19 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.93 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.130 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 3 NUMBER OF REFLECTIONS : 28799 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1451 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.9332 - 6.8600 0.98 3032 148 0.1823 0.2098 REMARK 3 2 6.8600 - 5.4498 0.99 2891 151 0.1830 0.2444 REMARK 3 3 5.4498 - 4.7623 0.99 2811 191 0.1510 0.2110 REMARK 3 4 4.7623 - 4.3275 0.98 2800 162 0.1492 0.1972 REMARK 3 5 4.3275 - 4.0176 0.98 2797 130 0.1786 0.2671 REMARK 3 6 4.0176 - 3.7810 0.96 2749 131 0.1974 0.2469 REMARK 3 7 3.7810 - 3.5917 0.96 2683 150 0.2177 0.3119 REMARK 3 8 3.5917 - 3.4355 0.93 2656 133 0.2362 0.2997 REMARK 3 9 3.4355 - 3.3033 0.91 2583 122 0.2601 0.3222 REMARK 3 10 3.3033 - 3.1894 0.84 2346 133 0.2716 0.3171 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.29 REMARK 3 B_SOL : 28.09 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.550 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 21.56390 REMARK 3 B22 (A**2) : -12.65720 REMARK 3 B33 (A**2) : -8.90670 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 8752 REMARK 3 ANGLE : 0.924 11934 REMARK 3 CHIRALITY : 0.057 1346 REMARK 3 PLANARITY : 0.004 1536 REMARK 3 DIHEDRAL : 21.198 3196 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -30.8400 41.4651 -7.6333 REMARK 3 T TENSOR REMARK 3 T11: 0.3801 T22: 0.3636 REMARK 3 T33: 0.3578 T12: 0.0084 REMARK 3 T13: -0.0095 T23: -0.0257 REMARK 3 L TENSOR REMARK 3 L11: 0.0351 L22: 0.2311 REMARK 3 L33: 0.1571 L12: 0.0611 REMARK 3 L13: 0.0469 L23: 0.2204 REMARK 3 S TENSOR REMARK 3 S11: -0.0009 S12: -0.0095 S13: -0.0203 REMARK 3 S21: 0.0668 S22: 0.0010 S23: -0.0389 REMARK 3 S31: 0.0672 S32: -0.0436 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4MYW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-OCT-13. REMARK 100 THE DEPOSITION ID IS D_1000082539. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-APR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97939 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30129 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.189 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : 0.09100 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.6720 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.49200 REMARK 200 R SYM FOR SHELL (I) : 0.49200 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.884 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 3U82 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM CHLORIDE, 0.1M SODIUM REMARK 280 CACODYLATE, 8% W/V PEG 8000, PH 6.0, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 85.42850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 96.12550 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 85.42850 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 96.12550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A -2 REMARK 465 ASP A -1 REMARK 465 LEU A 0 REMARK 465 LYS A 1 REMARK 465 TYR A 2 REMARK 465 ALA A 3 REMARK 465 LEU A 4 REMARK 465 ALA A 5 REMARK 465 ASP A 6 REMARK 465 PRO A 7 REMARK 465 SER A 8 REMARK 465 LEU A 9 REMARK 465 LYS A 10 REMARK 465 MET A 11 REMARK 465 ALA A 12 REMARK 465 ASP A 13 REMARK 465 PRO A 14 REMARK 465 ASN A 15 REMARK 465 ARG A 16 REMARK 465 PHE A 17 REMARK 465 ARG A 18 REMARK 465 GLY A 19 REMARK 465 LYS A 20 REMARK 465 ASN A 21 REMARK 465 LEU A 22 REMARK 465 PRO A 255 REMARK 465 GLU A 256 REMARK 465 LEU A 257 REMARK 465 SER A 258 REMARK 465 ASP A 259 REMARK 465 THR A 260 REMARK 465 THR A 261 REMARK 465 ASN A 262 REMARK 465 ALA A 263 REMARK 465 THR A 264 REMARK 465 GLN A 265 REMARK 465 PRO A 266 REMARK 465 GLU A 267 REMARK 465 LEU A 268 REMARK 465 VAL A 269 REMARK 465 PRO A 270 REMARK 465 GLU A 271 REMARK 465 ASP A 272 REMARK 465 PRO A 273 REMARK 465 GLU A 274 REMARK 465 ASP A 275 REMARK 465 SER A 276 REMARK 465 ALA A 277 REMARK 465 LEU A 278 REMARK 465 LEU A 279 REMARK 465 GLU A 280 REMARK 465 ASP A 281 REMARK 465 PRO A 282 REMARK 465 ALA A 283 REMARK 465 GLY A 284 REMARK 465 THR A 285 REMARK 465 HIS A 286 REMARK 465 HIS A 287 REMARK 465 HIS A 288 REMARK 465 HIS A 289 REMARK 465 HIS A 290 REMARK 465 HIS A 291 REMARK 465 MET B 16 REMARK 465 ALA B 17 REMARK 465 SER B 18 REMARK 465 MET B 19 REMARK 465 THR B 20 REMARK 465 GLY B 21 REMARK 465 GLY B 22 REMARK 465 GLN B 23 REMARK 465 GLN B 24 REMARK 465 MET B 25 REMARK 465 GLY B 26 REMARK 465 ARG B 27 REMARK 465 ASP B 28 REMARK 465 PRO B 29 REMARK 465 SER B 30 REMARK 465 GLN B 31 REMARK 465 VAL B 32 REMARK 465 ALA B 336 REMARK 465 ALA B 337 REMARK 465 ALA B 338 REMARK 465 LEU B 339 REMARK 465 GLU B 340 REMARK 465 HIS B 341 REMARK 465 HIS B 342 REMARK 465 HIS B 343 REMARK 465 HIS B 344 REMARK 465 HIS B 345 REMARK 465 HIS B 346 REMARK 465 ALA C -2 REMARK 465 ASP C -1 REMARK 465 LEU C 0 REMARK 465 LYS C 1 REMARK 465 TYR C 2 REMARK 465 ALA C 3 REMARK 465 LEU C 4 REMARK 465 ALA C 5 REMARK 465 ASP C 6 REMARK 465 PRO C 7 REMARK 465 SER C 8 REMARK 465 LEU C 9 REMARK 465 LYS C 10 REMARK 465 MET C 11 REMARK 465 ALA C 12 REMARK 465 ASP C 13 REMARK 465 PRO C 14 REMARK 465 ASN C 15 REMARK 465 ARG C 16 REMARK 465 PHE C 17 REMARK 465 ARG C 18 REMARK 465 GLY C 19 REMARK 465 LYS C 20 REMARK 465 ASN C 21 REMARK 465 LEU C 22 REMARK 465 PRO C 255 REMARK 465 GLU C 256 REMARK 465 LEU C 257 REMARK 465 SER C 258 REMARK 465 ASP C 259 REMARK 465 THR C 260 REMARK 465 THR C 261 REMARK 465 ASN C 262 REMARK 465 ALA C 263 REMARK 465 THR C 264 REMARK 465 GLN C 265 REMARK 465 PRO C 266 REMARK 465 GLU C 267 REMARK 465 LEU C 268 REMARK 465 VAL C 269 REMARK 465 PRO C 270 REMARK 465 GLU C 271 REMARK 465 ASP C 272 REMARK 465 PRO C 273 REMARK 465 GLU C 274 REMARK 465 ASP C 275 REMARK 465 SER C 276 REMARK 465 ALA C 277 REMARK 465 LEU C 278 REMARK 465 LEU C 279 REMARK 465 GLU C 280 REMARK 465 ASP C 281 REMARK 465 PRO C 282 REMARK 465 ALA C 283 REMARK 465 GLY C 284 REMARK 465 THR C 285 REMARK 465 HIS C 286 REMARK 465 HIS C 287 REMARK 465 HIS C 288 REMARK 465 HIS C 289 REMARK 465 HIS C 290 REMARK 465 HIS C 291 REMARK 465 MET D 16 REMARK 465 ALA D 17 REMARK 465 SER D 18 REMARK 465 MET D 19 REMARK 465 THR D 20 REMARK 465 GLY D 21 REMARK 465 GLY D 22 REMARK 465 GLN D 23 REMARK 465 GLN D 24 REMARK 465 MET D 25 REMARK 465 GLY D 26 REMARK 465 ARG D 27 REMARK 465 ASP D 28 REMARK 465 PRO D 29 REMARK 465 SER D 30 REMARK 465 GLN D 31 REMARK 465 VAL D 32 REMARK 465 ALA D 336 REMARK 465 ALA D 337 REMARK 465 ALA D 338 REMARK 465 LEU D 339 REMARK 465 GLU D 340 REMARK 465 HIS D 341 REMARK 465 HIS D 342 REMARK 465 HIS D 343 REMARK 465 HIS D 344 REMARK 465 HIS D 345 REMARK 465 HIS D 346 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 204 CG2 REMARK 470 LYS B 190 CG CD CE NZ REMARK 470 THR C 204 CG2 REMARK 470 LYS D 190 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN C 94 C2 NAG F 1 2.14 REMARK 500 ND2 ASN A 94 C2 NAG E 1 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 215 C - N - CA ANGL. DEV. = 9.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 31 102.54 -45.31 REMARK 500 PRO A 32 137.02 -33.57 REMARK 500 ILE A 40 -50.72 -133.09 REMARK 500 PRO A 54 159.96 -43.82 REMARK 500 ALA A 65 -9.30 -58.06 REMARK 500 ASP A 104 -73.52 -21.71 REMARK 500 ASN A 105 51.44 -142.27 REMARK 500 PRO A 109 109.75 -47.77 REMARK 500 ILE A 110 -61.28 -95.69 REMARK 500 SER A 123 173.50 -59.52 REMARK 500 TYR A 137 -25.40 77.95 REMARK 500 ASP A 139 -5.97 -51.10 REMARK 500 PHE A 141 11.61 -142.27 REMARK 500 ALA A 155 70.87 58.07 REMARK 500 ASN A 171 -125.31 54.05 REMARK 500 ARG A 222 -119.73 -120.47 REMARK 500 PRO A 225 -16.55 -49.66 REMARK 500 PRO A 246 107.94 -43.67 REMARK 500 ALA B 54 -62.12 -96.78 REMARK 500 ASN B 55 78.41 -108.80 REMARK 500 THR B 63 -63.96 -97.28 REMARK 500 ASN B 72 105.43 49.31 REMARK 500 ARG B 113 74.48 46.57 REMARK 500 THR B 131 -114.83 -53.10 REMARK 500 ALA B 155 128.95 -34.78 REMARK 500 GLN B 163 73.40 -103.43 REMARK 500 ASP B 164 40.33 -91.49 REMARK 500 ASN B 176 69.69 37.82 REMARK 500 LEU B 189 136.79 -39.78 REMARK 500 HIS B 231 -136.37 53.69 REMARK 500 ASP B 264 86.27 52.69 REMARK 500 PRO B 276 167.96 -45.81 REMARK 500 TYR B 280 89.35 -161.67 REMARK 500 GLN B 296 -102.49 -85.96 REMARK 500 ASN B 297 -77.88 -118.56 REMARK 500 PRO B 321 10.36 -65.92 REMARK 500 PRO C 31 106.40 -32.28 REMARK 500 PRO C 32 134.94 -33.87 REMARK 500 ILE C 40 -77.05 -125.98 REMARK 500 SER C 43 -154.24 -136.90 REMARK 500 ALA C 65 -34.22 -30.78 REMARK 500 HIS C 91 -167.79 -113.85 REMARK 500 ASN C 105 38.12 76.21 REMARK 500 TYR C 137 -18.27 74.85 REMARK 500 ASP C 139 18.96 -69.42 REMARK 500 ASN C 148 -15.38 82.98 REMARK 500 ALA C 155 83.08 54.20 REMARK 500 ALA C 157 178.71 -54.40 REMARK 500 ASN C 171 -126.10 62.78 REMARK 500 ALA C 185 -161.54 -64.27 REMARK 500 REMARK 500 THIS ENTRY HAS 75 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3U82 RELATED DB: PDB REMARK 900 STRUCTURE OF HSV-1 GD BOUND TO NECTIN-1 REMARK 900 RELATED ID: 4MYV RELATED DB: PDB REMARK 900 FREE HSV-2 GD STRUCTURE REMARK 999 REMARK 999 SEQUENCE REMARK 999 NATURAL VARIANT AT THIS POSITION. THE SEQUENCE IS BASED ON A RECORD REMARK 999 IN GENBANK WITH THE ACCESSION NUMBER EU018091 DBREF 4MYW A 1 285 UNP P03172 GD_HHV23 26 310 DBREF 4MYW B 30 335 UNP Q15223 PVRL1_HUMAN 30 335 DBREF 4MYW C 1 285 UNP P03172 GD_HHV23 26 310 DBREF 4MYW D 30 335 UNP Q15223 PVRL1_HUMAN 30 335 SEQADV 4MYW ALA A -2 UNP P03172 EXPRESSION TAG SEQADV 4MYW ASP A -1 UNP P03172 EXPRESSION TAG SEQADV 4MYW LEU A 0 UNP P03172 EXPRESSION TAG SEQADV 4MYW GLN A 27 UNP P03172 ARG 52 SEE REMARK 999 SEQADV 4MYW HIS A 286 UNP P03172 EXPRESSION TAG SEQADV 4MYW HIS A 287 UNP P03172 EXPRESSION TAG SEQADV 4MYW HIS A 288 UNP P03172 EXPRESSION TAG SEQADV 4MYW HIS A 289 UNP P03172 EXPRESSION TAG SEQADV 4MYW HIS A 290 UNP P03172 EXPRESSION TAG SEQADV 4MYW HIS A 291 UNP P03172 EXPRESSION TAG SEQADV 4MYW MET B 16 UNP Q15223 EXPRESSION TAG SEQADV 4MYW ALA B 17 UNP Q15223 EXPRESSION TAG SEQADV 4MYW SER B 18 UNP Q15223 EXPRESSION TAG SEQADV 4MYW MET B 19 UNP Q15223 EXPRESSION TAG SEQADV 4MYW THR B 20 UNP Q15223 EXPRESSION TAG SEQADV 4MYW GLY B 21 UNP Q15223 EXPRESSION TAG SEQADV 4MYW GLY B 22 UNP Q15223 EXPRESSION TAG SEQADV 4MYW GLN B 23 UNP Q15223 EXPRESSION TAG SEQADV 4MYW GLN B 24 UNP Q15223 EXPRESSION TAG SEQADV 4MYW MET B 25 UNP Q15223 EXPRESSION TAG SEQADV 4MYW GLY B 26 UNP Q15223 EXPRESSION TAG SEQADV 4MYW ARG B 27 UNP Q15223 EXPRESSION TAG SEQADV 4MYW ASP B 28 UNP Q15223 EXPRESSION TAG SEQADV 4MYW PRO B 29 UNP Q15223 EXPRESSION TAG SEQADV 4MYW ALA B 336 UNP Q15223 EXPRESSION TAG SEQADV 4MYW ALA B 337 UNP Q15223 EXPRESSION TAG SEQADV 4MYW ALA B 338 UNP Q15223 EXPRESSION TAG SEQADV 4MYW LEU B 339 UNP Q15223 EXPRESSION TAG SEQADV 4MYW GLU B 340 UNP Q15223 EXPRESSION TAG SEQADV 4MYW HIS B 341 UNP Q15223 EXPRESSION TAG SEQADV 4MYW HIS B 342 UNP Q15223 EXPRESSION TAG SEQADV 4MYW HIS B 343 UNP Q15223 EXPRESSION TAG SEQADV 4MYW HIS B 344 UNP Q15223 EXPRESSION TAG SEQADV 4MYW HIS B 345 UNP Q15223 EXPRESSION TAG SEQADV 4MYW HIS B 346 UNP Q15223 EXPRESSION TAG SEQADV 4MYW ALA C -2 UNP P03172 EXPRESSION TAG SEQADV 4MYW ASP C -1 UNP P03172 EXPRESSION TAG SEQADV 4MYW LEU C 0 UNP P03172 EXPRESSION TAG SEQADV 4MYW GLN C 27 UNP P03172 ARG 52 SEE REMARK 999 SEQADV 4MYW HIS C 286 UNP P03172 EXPRESSION TAG SEQADV 4MYW HIS C 287 UNP P03172 EXPRESSION TAG SEQADV 4MYW HIS C 288 UNP P03172 EXPRESSION TAG SEQADV 4MYW HIS C 289 UNP P03172 EXPRESSION TAG SEQADV 4MYW HIS C 290 UNP P03172 EXPRESSION TAG SEQADV 4MYW HIS C 291 UNP P03172 EXPRESSION TAG SEQADV 4MYW MET D 16 UNP Q15223 EXPRESSION TAG SEQADV 4MYW ALA D 17 UNP Q15223 EXPRESSION TAG SEQADV 4MYW SER D 18 UNP Q15223 EXPRESSION TAG SEQADV 4MYW MET D 19 UNP Q15223 EXPRESSION TAG SEQADV 4MYW THR D 20 UNP Q15223 EXPRESSION TAG SEQADV 4MYW GLY D 21 UNP Q15223 EXPRESSION TAG SEQADV 4MYW GLY D 22 UNP Q15223 EXPRESSION TAG SEQADV 4MYW GLN D 23 UNP Q15223 EXPRESSION TAG SEQADV 4MYW GLN D 24 UNP Q15223 EXPRESSION TAG SEQADV 4MYW MET D 25 UNP Q15223 EXPRESSION TAG SEQADV 4MYW GLY D 26 UNP Q15223 EXPRESSION TAG SEQADV 4MYW ARG D 27 UNP Q15223 EXPRESSION TAG SEQADV 4MYW ASP D 28 UNP Q15223 EXPRESSION TAG SEQADV 4MYW PRO D 29 UNP Q15223 EXPRESSION TAG SEQADV 4MYW ALA D 336 UNP Q15223 EXPRESSION TAG SEQADV 4MYW ALA D 337 UNP Q15223 EXPRESSION TAG SEQADV 4MYW ALA D 338 UNP Q15223 EXPRESSION TAG SEQADV 4MYW LEU D 339 UNP Q15223 EXPRESSION TAG SEQADV 4MYW GLU D 340 UNP Q15223 EXPRESSION TAG SEQADV 4MYW HIS D 341 UNP Q15223 EXPRESSION TAG SEQADV 4MYW HIS D 342 UNP Q15223 EXPRESSION TAG SEQADV 4MYW HIS D 343 UNP Q15223 EXPRESSION TAG SEQADV 4MYW HIS D 344 UNP Q15223 EXPRESSION TAG SEQADV 4MYW HIS D 345 UNP Q15223 EXPRESSION TAG SEQADV 4MYW HIS D 346 UNP Q15223 EXPRESSION TAG SEQRES 1 A 294 ALA ASP LEU LYS TYR ALA LEU ALA ASP PRO SER LEU LYS SEQRES 2 A 294 MET ALA ASP PRO ASN ARG PHE ARG GLY LYS ASN LEU PRO SEQRES 3 A 294 VAL LEU ASP GLN LEU THR ASP PRO PRO GLY VAL LYS ARG SEQRES 4 A 294 VAL TYR HIS ILE GLN PRO SER LEU GLU ASP PRO PHE GLN SEQRES 5 A 294 PRO PRO SER ILE PRO ILE THR VAL TYR TYR ALA VAL LEU SEQRES 6 A 294 GLU ARG ALA CYS ARG SER VAL LEU LEU HIS ALA PRO SER SEQRES 7 A 294 GLU ALA PRO GLN ILE VAL ARG GLY ALA SER ASP GLU ALA SEQRES 8 A 294 ARG LYS HIS THR TYR ASN LEU THR ILE ALA TRP TYR ARG SEQRES 9 A 294 MET GLY ASP ASN CYS ALA ILE PRO ILE THR VAL MET GLU SEQRES 10 A 294 TYR THR GLU CYS PRO TYR ASN LYS SER LEU GLY VAL CYS SEQRES 11 A 294 PRO ILE ARG THR GLN PRO ARG TRP SER TYR TYR ASP SER SEQRES 12 A 294 PHE SER ALA VAL SER GLU ASP ASN LEU GLY PHE LEU MET SEQRES 13 A 294 HIS ALA PRO ALA PHE GLU THR ALA GLY THR TYR LEU ARG SEQRES 14 A 294 LEU VAL LYS ILE ASN ASP TRP THR GLU ILE THR GLN PHE SEQRES 15 A 294 ILE LEU GLU HIS ARG ALA ARG ALA SER CYS LYS TYR ALA SEQRES 16 A 294 LEU PRO LEU ARG ILE PRO PRO ALA ALA CYS LEU THR SER SEQRES 17 A 294 LYS ALA TYR GLN GLN GLY VAL THR VAL ASP SER ILE GLY SEQRES 18 A 294 MET LEU PRO ARG PHE ILE PRO GLU ASN GLN ARG THR VAL SEQRES 19 A 294 ALA LEU TYR SER LEU LYS ILE ALA GLY TRP HIS GLY PRO SEQRES 20 A 294 LYS PRO PRO TYR THR SER THR LEU LEU PRO PRO GLU LEU SEQRES 21 A 294 SER ASP THR THR ASN ALA THR GLN PRO GLU LEU VAL PRO SEQRES 22 A 294 GLU ASP PRO GLU ASP SER ALA LEU LEU GLU ASP PRO ALA SEQRES 23 A 294 GLY THR HIS HIS HIS HIS HIS HIS SEQRES 1 B 331 MET ALA SER MET THR GLY GLY GLN GLN MET GLY ARG ASP SEQRES 2 B 331 PRO SER GLN VAL VAL GLN VAL ASN ASP SER MET TYR GLY SEQRES 3 B 331 PHE ILE GLY THR ASP VAL VAL LEU HIS CYS SER PHE ALA SEQRES 4 B 331 ASN PRO LEU PRO SER VAL LYS ILE THR GLN VAL THR TRP SEQRES 5 B 331 GLN LYS SER THR ASN GLY SER LYS GLN ASN VAL ALA ILE SEQRES 6 B 331 TYR ASN PRO SER MET GLY VAL SER VAL LEU ALA PRO TYR SEQRES 7 B 331 ARG GLU ARG VAL GLU PHE LEU ARG PRO SER PHE THR ASP SEQRES 8 B 331 GLY THR ILE ARG LEU SER ARG LEU GLU LEU GLU ASP GLU SEQRES 9 B 331 GLY VAL TYR ILE CYS GLU PHE ALA THR PHE PRO THR GLY SEQRES 10 B 331 ASN ARG GLU SER GLN LEU ASN LEU THR VAL MET ALA LYS SEQRES 11 B 331 PRO THR ASN TRP ILE GLU GLY THR GLN ALA VAL LEU ARG SEQRES 12 B 331 ALA LYS LYS GLY GLN ASP ASP LYS VAL LEU VAL ALA THR SEQRES 13 B 331 CYS THR SER ALA ASN GLY LYS PRO PRO SER VAL VAL SER SEQRES 14 B 331 TRP GLU THR ARG LEU LYS GLY GLU ALA GLU TYR GLN GLU SEQRES 15 B 331 ILE ARG ASN PRO ASN GLY THR VAL THR VAL ILE SER ARG SEQRES 16 B 331 TYR ARG LEU VAL PRO SER ARG GLU ALA HIS GLN GLN SER SEQRES 17 B 331 LEU ALA CYS ILE VAL ASN TYR HIS MET ASP ARG PHE LYS SEQRES 18 B 331 GLU SER LEU THR LEU ASN VAL GLN TYR GLU PRO GLU VAL SEQRES 19 B 331 THR ILE GLU GLY PHE ASP GLY ASN TRP TYR LEU GLN ARG SEQRES 20 B 331 MET ASP VAL LYS LEU THR CYS LYS ALA ASP ALA ASN PRO SEQRES 21 B 331 PRO ALA THR GLU TYR HIS TRP THR THR LEU ASN GLY SER SEQRES 22 B 331 LEU PRO LYS GLY VAL GLU ALA GLN ASN ARG THR LEU PHE SEQRES 23 B 331 PHE LYS GLY PRO ILE ASN TYR SER LEU ALA GLY THR TYR SEQRES 24 B 331 ILE CYS GLU ALA THR ASN PRO ILE GLY THR ARG SER GLY SEQRES 25 B 331 GLN VAL GLU VAL ASN ILE THR GLU ALA ALA ALA LEU GLU SEQRES 26 B 331 HIS HIS HIS HIS HIS HIS SEQRES 1 C 294 ALA ASP LEU LYS TYR ALA LEU ALA ASP PRO SER LEU LYS SEQRES 2 C 294 MET ALA ASP PRO ASN ARG PHE ARG GLY LYS ASN LEU PRO SEQRES 3 C 294 VAL LEU ASP GLN LEU THR ASP PRO PRO GLY VAL LYS ARG SEQRES 4 C 294 VAL TYR HIS ILE GLN PRO SER LEU GLU ASP PRO PHE GLN SEQRES 5 C 294 PRO PRO SER ILE PRO ILE THR VAL TYR TYR ALA VAL LEU SEQRES 6 C 294 GLU ARG ALA CYS ARG SER VAL LEU LEU HIS ALA PRO SER SEQRES 7 C 294 GLU ALA PRO GLN ILE VAL ARG GLY ALA SER ASP GLU ALA SEQRES 8 C 294 ARG LYS HIS THR TYR ASN LEU THR ILE ALA TRP TYR ARG SEQRES 9 C 294 MET GLY ASP ASN CYS ALA ILE PRO ILE THR VAL MET GLU SEQRES 10 C 294 TYR THR GLU CYS PRO TYR ASN LYS SER LEU GLY VAL CYS SEQRES 11 C 294 PRO ILE ARG THR GLN PRO ARG TRP SER TYR TYR ASP SER SEQRES 12 C 294 PHE SER ALA VAL SER GLU ASP ASN LEU GLY PHE LEU MET SEQRES 13 C 294 HIS ALA PRO ALA PHE GLU THR ALA GLY THR TYR LEU ARG SEQRES 14 C 294 LEU VAL LYS ILE ASN ASP TRP THR GLU ILE THR GLN PHE SEQRES 15 C 294 ILE LEU GLU HIS ARG ALA ARG ALA SER CYS LYS TYR ALA SEQRES 16 C 294 LEU PRO LEU ARG ILE PRO PRO ALA ALA CYS LEU THR SER SEQRES 17 C 294 LYS ALA TYR GLN GLN GLY VAL THR VAL ASP SER ILE GLY SEQRES 18 C 294 MET LEU PRO ARG PHE ILE PRO GLU ASN GLN ARG THR VAL SEQRES 19 C 294 ALA LEU TYR SER LEU LYS ILE ALA GLY TRP HIS GLY PRO SEQRES 20 C 294 LYS PRO PRO TYR THR SER THR LEU LEU PRO PRO GLU LEU SEQRES 21 C 294 SER ASP THR THR ASN ALA THR GLN PRO GLU LEU VAL PRO SEQRES 22 C 294 GLU ASP PRO GLU ASP SER ALA LEU LEU GLU ASP PRO ALA SEQRES 23 C 294 GLY THR HIS HIS HIS HIS HIS HIS SEQRES 1 D 331 MET ALA SER MET THR GLY GLY GLN GLN MET GLY ARG ASP SEQRES 2 D 331 PRO SER GLN VAL VAL GLN VAL ASN ASP SER MET TYR GLY SEQRES 3 D 331 PHE ILE GLY THR ASP VAL VAL LEU HIS CYS SER PHE ALA SEQRES 4 D 331 ASN PRO LEU PRO SER VAL LYS ILE THR GLN VAL THR TRP SEQRES 5 D 331 GLN LYS SER THR ASN GLY SER LYS GLN ASN VAL ALA ILE SEQRES 6 D 331 TYR ASN PRO SER MET GLY VAL SER VAL LEU ALA PRO TYR SEQRES 7 D 331 ARG GLU ARG VAL GLU PHE LEU ARG PRO SER PHE THR ASP SEQRES 8 D 331 GLY THR ILE ARG LEU SER ARG LEU GLU LEU GLU ASP GLU SEQRES 9 D 331 GLY VAL TYR ILE CYS GLU PHE ALA THR PHE PRO THR GLY SEQRES 10 D 331 ASN ARG GLU SER GLN LEU ASN LEU THR VAL MET ALA LYS SEQRES 11 D 331 PRO THR ASN TRP ILE GLU GLY THR GLN ALA VAL LEU ARG SEQRES 12 D 331 ALA LYS LYS GLY GLN ASP ASP LYS VAL LEU VAL ALA THR SEQRES 13 D 331 CYS THR SER ALA ASN GLY LYS PRO PRO SER VAL VAL SER SEQRES 14 D 331 TRP GLU THR ARG LEU LYS GLY GLU ALA GLU TYR GLN GLU SEQRES 15 D 331 ILE ARG ASN PRO ASN GLY THR VAL THR VAL ILE SER ARG SEQRES 16 D 331 TYR ARG LEU VAL PRO SER ARG GLU ALA HIS GLN GLN SER SEQRES 17 D 331 LEU ALA CYS ILE VAL ASN TYR HIS MET ASP ARG PHE LYS SEQRES 18 D 331 GLU SER LEU THR LEU ASN VAL GLN TYR GLU PRO GLU VAL SEQRES 19 D 331 THR ILE GLU GLY PHE ASP GLY ASN TRP TYR LEU GLN ARG SEQRES 20 D 331 MET ASP VAL LYS LEU THR CYS LYS ALA ASP ALA ASN PRO SEQRES 21 D 331 PRO ALA THR GLU TYR HIS TRP THR THR LEU ASN GLY SER SEQRES 22 D 331 LEU PRO LYS GLY VAL GLU ALA GLN ASN ARG THR LEU PHE SEQRES 23 D 331 PHE LYS GLY PRO ILE ASN TYR SER LEU ALA GLY THR TYR SEQRES 24 D 331 ILE CYS GLU ALA THR ASN PRO ILE GLY THR ARG SER GLY SEQRES 25 D 331 GLN VAL GLU VAL ASN ILE THR GLU ALA ALA ALA LEU GLU SEQRES 26 D 331 HIS HIS HIS HIS HIS HIS MODRES 4MYW ASN C 121 ASN GLYCOSYLATION SITE MODRES 4MYW ASN C 94 ASN GLYCOSYLATION SITE MODRES 4MYW ASN A 121 ASN GLYCOSYLATION SITE MODRES 4MYW ASN A 94 ASN GLYCOSYLATION SITE HET NAG E 1 14 HET NAG E 2 14 HET NAG F 1 14 HET NAG F 2 14 HET NAG A 503 14 HET NAG C 503 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 5 NAG 6(C8 H15 N O6) FORMUL 9 HOH *57(H2 O) HELIX 1 1 GLU A 76 GLY A 83 1 8 HELIX 2 2 SER A 85 LYS A 90 1 6 HELIX 3 3 ALA A 157 ALA A 161 5 5 HELIX 4 4 PRO A 198 CYS A 202 5 5 HELIX 5 5 THR A 204 VAL A 212 1 9 HELIX 6 6 ILE A 224 ILE A 238 1 15 HELIX 7 7 GLU B 115 GLU B 119 5 5 HELIX 8 8 ASN B 307 ALA B 311 5 5 HELIX 9 9 GLU C 76 GLY C 83 1 8 HELIX 10 10 SER C 85 LYS C 90 1 6 HELIX 11 11 PRO C 198 CYS C 202 5 5 HELIX 12 12 THR C 204 VAL C 212 1 9 HELIX 13 13 GLU C 226 ILE C 238 1 13 HELIX 14 14 GLU D 115 GLU D 119 5 5 HELIX 15 15 SER D 216 HIS D 220 5 5 HELIX 16 16 ASN D 307 ALA D 311 5 5 SHEET 1 A 5 LYS A 35 VAL A 37 0 SHEET 2 A 5 ILE A 129 THR A 131 1 O ARG A 130 N VAL A 37 SHEET 3 A 5 CYS A 106 CYS A 118 -1 N THR A 116 O ILE A 129 SHEET 4 A 5 ARG A 134 TRP A 135 -1 O ARG A 134 N VAL A 112 SHEET 5 A 5 LEU A 220 PRO A 221 -1 O LEU A 220 N TRP A 135 SHEET 1 B 8 LYS A 35 VAL A 37 0 SHEET 2 B 8 ILE A 129 THR A 131 1 O ARG A 130 N VAL A 37 SHEET 3 B 8 CYS A 106 CYS A 118 -1 N THR A 116 O ILE A 129 SHEET 4 B 8 TYR A 93 GLY A 103 -1 N ILE A 97 O MET A 113 SHEET 5 B 8 GLY A 162 ILE A 170 -1 O THR A 163 N MET A 102 SHEET 6 B 8 TRP A 173 HIS A 183 -1 O PHE A 179 N TYR A 164 SHEET 7 B 8 ILE A 53 LEU A 62 1 N THR A 56 O GLN A 178 SHEET 8 B 8 SER A 250 LEU A 252 -1 O THR A 251 N TYR A 59 SHEET 1 C 3 SER A 68 LEU A 71 0 SHEET 2 C 3 PHE A 151 HIS A 154 -1 O PHE A 151 N LEU A 71 SHEET 3 C 3 SER A 142 VAL A 144 -1 N ALA A 143 O LEU A 152 SHEET 1 D 6 SER B 38 PHE B 42 0 SHEET 2 D 6 ASN B 133 MET B 143 1 O MET B 143 N GLY B 41 SHEET 3 D 6 GLY B 120 PHE B 129 -1 N TYR B 122 O LEU B 138 SHEET 4 D 6 LYS B 61 SER B 70 -1 N LYS B 61 O PHE B 129 SHEET 5 D 6 GLN B 76 ASN B 82 -1 O VAL B 78 N TRP B 67 SHEET 6 D 6 GLY B 86 VAL B 89 -1 O GLY B 86 N ASN B 82 SHEET 1 E 3 VAL B 47 LEU B 49 0 SHEET 2 E 3 ILE B 109 LEU B 111 -1 O LEU B 111 N VAL B 47 SHEET 3 E 3 VAL B 97 PHE B 99 -1 N GLU B 98 O ARG B 110 SHEET 1 F 4 THR B 147 GLY B 152 0 SHEET 2 F 4 VAL B 167 GLY B 177 -1 O ALA B 175 N THR B 147 SHEET 3 F 4 VAL B 205 LEU B 213 -1 O VAL B 207 N SER B 174 SHEET 4 F 4 GLU B 192 ARG B 199 -1 N GLN B 196 O ILE B 208 SHEET 1 G 5 LEU B 157 ALA B 159 0 SHEET 2 G 5 VAL B 243 GLU B 252 1 O GLN B 244 N LEU B 157 SHEET 3 G 5 VAL B 265 ASN B 274 -1 O LYS B 270 N THR B 250 SHEET 4 G 5 THR B 299 PHE B 302 -1 O PHE B 302 N VAL B 265 SHEET 5 G 5 VAL B 293 ALA B 295 -1 N GLU B 294 O PHE B 301 SHEET 1 H 3 VAL B 182 GLU B 186 0 SHEET 2 H 3 SER B 223 TYR B 230 -1 O ILE B 227 N SER B 184 SHEET 3 H 3 ASP B 233 THR B 240 -1 O PHE B 235 N VAL B 228 SHEET 1 I 3 GLU B 279 THR B 284 0 SHEET 2 I 3 GLY B 312 THR B 319 -1 O ILE B 315 N THR B 283 SHEET 3 I 3 THR B 324 VAL B 331 -1 O VAL B 331 N GLY B 312 SHEET 1 J 5 LYS C 35 VAL C 37 0 SHEET 2 J 5 ILE C 129 THR C 131 1 O ARG C 130 N VAL C 37 SHEET 3 J 5 ALA C 107 PRO C 119 -1 N THR C 116 O ILE C 129 SHEET 4 J 5 ARG C 134 TRP C 135 -1 O ARG C 134 N VAL C 112 SHEET 5 J 5 LEU C 220 PRO C 221 -1 O LEU C 220 N TRP C 135 SHEET 1 K 8 LYS C 35 VAL C 37 0 SHEET 2 K 8 ILE C 129 THR C 131 1 O ARG C 130 N VAL C 37 SHEET 3 K 8 ALA C 107 PRO C 119 -1 N THR C 116 O ILE C 129 SHEET 4 K 8 THR C 92 MET C 102 -1 N ILE C 97 O MET C 113 SHEET 5 K 8 GLY C 162 ILE C 170 -1 O LEU C 167 N ALA C 98 SHEET 6 K 8 TRP C 173 HIS C 183 -1 O PHE C 179 N TYR C 164 SHEET 7 K 8 ILE C 53 LEU C 62 1 N TYR C 58 O ILE C 180 SHEET 8 K 8 SER C 250 THR C 251 -1 O THR C 251 N TYR C 59 SHEET 1 L 3 SER C 68 HIS C 72 0 SHEET 2 L 3 GLY C 150 HIS C 154 -1 O PHE C 151 N LEU C 71 SHEET 3 L 3 SER C 142 VAL C 144 -1 N ALA C 143 O LEU C 152 SHEET 1 M 6 SER D 38 PHE D 42 0 SHEET 2 M 6 ASN D 139 MET D 143 1 O MET D 143 N GLY D 41 SHEET 3 M 6 GLY D 120 PHE D 129 -1 N GLY D 120 O LEU D 140 SHEET 4 M 6 LYS D 61 SER D 70 -1 N THR D 63 O ALA D 127 SHEET 5 M 6 ASN D 77 ASN D 82 -1 O VAL D 78 N TRP D 67 SHEET 6 M 6 GLY D 86 VAL D 89 -1 O GLY D 86 N ASN D 82 SHEET 1 N 4 SER D 38 PHE D 42 0 SHEET 2 N 4 ASN D 139 MET D 143 1 O MET D 143 N GLY D 41 SHEET 3 N 4 GLY D 120 PHE D 129 -1 N GLY D 120 O LEU D 140 SHEET 4 N 4 GLU D 135 SER D 136 -1 O SER D 136 N CYS D 124 SHEET 1 O 2 VAL D 47 LEU D 49 0 SHEET 2 O 2 ILE D 109 LEU D 111 -1 O LEU D 111 N VAL D 47 SHEET 1 P 4 THR D 147 GLY D 152 0 SHEET 2 P 4 VAL D 167 GLY D 177 -1 O THR D 171 N GLU D 151 SHEET 3 P 4 VAL D 205 LEU D 213 -1 O VAL D 205 N GLY D 177 SHEET 4 P 4 GLU D 192 ARG D 199 -1 N GLU D 194 O ARG D 210 SHEET 1 Q 5 LEU D 157 ARG D 158 0 SHEET 2 Q 5 VAL D 243 GLU D 252 1 O GLN D 244 N LEU D 157 SHEET 3 Q 5 VAL D 265 ASN D 274 -1 O LYS D 270 N THR D 250 SHEET 4 Q 5 THR D 299 PHE D 302 -1 O PHE D 302 N VAL D 265 SHEET 5 Q 5 VAL D 293 ALA D 295 -1 N GLU D 294 O PHE D 301 SHEET 1 R 3 VAL D 182 THR D 187 0 SHEET 2 R 3 SER D 223 TYR D 230 -1 O ILE D 227 N SER D 184 SHEET 3 R 3 ASP D 233 THR D 240 -1 O LEU D 239 N LEU D 224 SHEET 1 S 3 GLU D 279 THR D 284 0 SHEET 2 S 3 GLY D 312 ASN D 320 -1 O ILE D 315 N THR D 283 SHEET 3 S 3 GLY D 323 VAL D 331 -1 O ARG D 325 N ALA D 318 SSBOND 1 CYS A 66 CYS A 189 1555 1555 2.04 SSBOND 2 CYS A 106 CYS A 202 1555 1555 2.04 SSBOND 3 CYS A 118 CYS A 127 1555 1555 2.04 SSBOND 4 CYS B 51 CYS B 124 1555 1555 2.04 SSBOND 5 CYS B 172 CYS B 226 1555 1555 2.04 SSBOND 6 CYS B 269 CYS B 316 1555 1555 2.05 SSBOND 7 CYS C 66 CYS C 189 1555 1555 2.03 SSBOND 8 CYS C 106 CYS C 202 1555 1555 2.04 SSBOND 9 CYS C 118 CYS C 127 1555 1555 2.05 SSBOND 10 CYS D 51 CYS D 124 1555 1555 2.04 SSBOND 11 CYS D 172 CYS D 226 1555 1555 2.04 SSBOND 12 CYS D 269 CYS D 316 1555 1555 2.05 LINK ND2 ASN A 94 C1 NAG E 1 1555 1555 1.45 LINK ND2 ASN A 121 C1 NAG A 503 1555 1555 1.45 LINK ND2 ASN C 94 C1 NAG F 1 1555 1555 1.44 LINK ND2 ASN C 121 C1 NAG C 503 1555 1555 1.44 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.45 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.44 CISPEP 1 GLY A 243 PRO A 244 0 10.79 CISPEP 2 ALA B 91 PRO B 92 0 3.81 CISPEP 3 PHE B 129 PRO B 130 0 2.60 CISPEP 4 LYS B 178 PRO B 179 0 4.34 CISPEP 5 ASN B 274 PRO B 275 0 3.54 CISPEP 6 GLY B 304 PRO B 305 0 1.75 CISPEP 7 GLY C 243 PRO C 244 0 3.02 CISPEP 8 ALA D 91 PRO D 92 0 2.51 CISPEP 9 PHE D 129 PRO D 130 0 -2.96 CISPEP 10 LYS D 178 PRO D 179 0 0.57 CISPEP 11 ASN D 274 PRO D 275 0 1.37 CISPEP 12 GLY D 304 PRO D 305 0 2.03 CRYST1 53.337 170.857 192.251 90.00 90.00 90.00 P 2 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018749 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005853 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005202 0.00000