PDB Short entry for 4NJ4 HEADER OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR 08-NOV-13 4NJ4 TITLE CRYSTAL STRUCTURE OF HUMAN ALKBH5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA DEMETHYLASE ALKBH5; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: ALKBH5 RESIDUES 66-292; COMPND 5 SYNONYM: ALKYLATED DNA REPAIR PROTEIN ALKB HOMOLOG 5, ALPHA- COMPND 6 KETOGLUTARATE-DEPENDENT DIOXYGENASE ALKB HOMOLOG 5; COMPND 7 EC: 1.14.11.-; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ABH5, ALKBH5, OFOXD1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS DOUBLE-STRANDED BETA HELIX, JELLY-ROLL MOTIF, DIOXYGENASE, RNA KEYWDS 2 DEMETHYLASE, RNA, OXIDOREDUCTASE-OXIDOREDUCTASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR W.S.AIK,M.A.MCDONOUGH,C.J.SCHOFIELD REVDAT 3 21-MAY-14 4NJ4 1 JRNL REVDAT 2 14-MAY-14 4NJ4 1 JRNL REVDAT 1 15-JAN-14 4NJ4 0 JRNL AUTH W.AIK,J.S.SCOTTI,H.CHOI,L.GONG,M.DEMETRIADES,C.J.SCHOFIELD, JRNL AUTH 2 M.A.MCDONOUGH JRNL TITL STRUCTURE OF HUMAN RNA N6-METHYLADENINE DEMETHYLASE ALKBH5 JRNL TITL 2 PROVIDES INSIGHTS INTO ITS MECHANISMS OF NUCLEIC ACID JRNL TITL 3 RECOGNITION AND DEMETHYLATION. JRNL REF NUCLEIC ACIDS RES. V. 42 4741 2014 JRNL REFN ISSN 0305-1048 JRNL PMID 24489119 JRNL DOI 10.1093/NAR/GKU085 REMARK 2 REMARK 2 RESOLUTION. 2.02 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.02 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.99 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 3 NUMBER OF REFLECTIONS : 33233 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2004 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.9932 - 4.8593 1.00 0 149 0.1657 0.1999 REMARK 3 2 2.0674 - 2.0170 0.95 0 138 0.2658 0.3049 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.22 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4NJ4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-DEC-13. REMARK 100 THE RCSB ID CODE IS RCSB083267. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97889 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL2000 REMARK 200 DATA SCALING SOFTWARE : HKL2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33274 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.020 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.14200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.02 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: ENSEMBLE OF PDB ENTRIES 4IE5, 3S57, 2IUW, AND 3THT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 3350, 0.125 M POTASSIUM REMARK 280 NITRATE, 0.5 MM MANGANESE (II) CHLORIDE, 2 MM UN9, PH 7.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.33000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 44.58550 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.33000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 44.58550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS ALSO STATE THAT THE BIOLOGICAL UNIT IS UNKNOWN REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 527 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 43 REMARK 465 HIS A 44 REMARK 465 HIS A 45 REMARK 465 HIS A 46 REMARK 465 HIS A 47 REMARK 465 HIS A 48 REMARK 465 HIS A 49 REMARK 465 SER A 50 REMARK 465 SER A 51 REMARK 465 GLY A 52 REMARK 465 VAL A 53 REMARK 465 ASP A 54 REMARK 465 LEU A 55 REMARK 465 GLY A 56 REMARK 465 THR A 57 REMARK 465 GLU A 58 REMARK 465 ASN A 59 REMARK 465 LEU A 60 REMARK 465 TYR A 61 REMARK 465 PHE A 62 REMARK 465 GLN A 63 REMARK 465 SER A 64 REMARK 465 MET A 65 REMARK 465 PRO A 66 REMARK 465 GLU A 67 REMARK 465 ARG A 68 REMARK 465 LEU A 145 REMARK 465 GLN A 146 REMARK 465 LYS A 147 REMARK 465 ARG A 148 REMARK 465 GLY A 149 REMARK 465 MET B 43 REMARK 465 HIS B 44 REMARK 465 HIS B 45 REMARK 465 HIS B 46 REMARK 465 HIS B 47 REMARK 465 HIS B 48 REMARK 465 HIS B 49 REMARK 465 SER B 50 REMARK 465 SER B 51 REMARK 465 GLY B 52 REMARK 465 VAL B 53 REMARK 465 ASP B 54 REMARK 465 LEU B 55 REMARK 465 GLY B 56 REMARK 465 THR B 57 REMARK 465 GLU B 58 REMARK 465 ASN B 59 REMARK 465 LEU B 60 REMARK 465 TYR B 61 REMARK 465 PHE B 62 REMARK 465 GLN B 63 REMARK 465 SER B 64 REMARK 465 MET B 65 REMARK 465 PRO B 66 REMARK 465 GLU B 67 REMARK 465 ARG B 68 REMARK 465 SER B 69 REMARK 465 ASP B 70 REMARK 465 TYR B 71 REMARK 465 GLU B 72 REMARK 465 GLU B 73 REMARK 465 GLN B 74 REMARK 465 GLN B 75 REMARK 465 LEU B 76 REMARK 465 GLN B 77 REMARK 465 ALA B 143 REMARK 465 GLN B 144 REMARK 465 LEU B 145 REMARK 465 GLN B 146 REMARK 465 LYS B 147 REMARK 465 ARG B 148 REMARK 465 GLY B 149 REMARK 465 PRO B 150 REMARK 465 GLY B 151 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 69 N CA CB OG REMARK 470 ASP A 70 CG OD1 OD2 REMARK 470 GLU A 72 CG CD OE1 OE2 REMARK 470 GLU A 73 CG CD OE1 OE2 REMARK 470 ARG A 90 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 121 CG CD OE1 OE2 REMARK 470 GLN A 144 CG CD OE1 NE2 REMARK 470 GLU A 163 CG CD OE1 OE2 REMARK 470 ARG A 180 CD NE CZ NH1 NH2 REMARK 470 LYS B 78 CG CD CE NZ REMARK 470 GLU B 79 CG CD OE1 OE2 REMARK 470 GLU B 80 CG CD OE1 OE2 REMARK 470 LYS B 86 CE NZ REMARK 470 ARG B 90 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 93 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 97 CG CD OE1 NE2 REMARK 470 ASP B 98 CG OD1 OD2 REMARK 470 LYS B 102 CG CD CE NZ REMARK 470 ARG B 106 CZ NH1 NH2 REMARK 470 ARG B 113 CZ NH1 NH2 REMARK 470 ARG B 180 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 238 NE CZ NH1 NH2 REMARK 470 LYS B 274 CG CD CE NZ REMARK 470 LEU B 292 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O1 NO3 B 302 O HOH B 479 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 203 123.48 -36.59 REMARK 500 PHE A 221 -44.43 80.79 REMARK 500 SER A 224 -156.59 -151.78 REMARK 500 ARG A 238 -2.99 88.84 REMARK 500 LEU B 94 -26.89 -142.93 REMARK 500 SER B 203 124.41 -37.58 REMARK 500 PHE B 221 -41.06 78.54 REMARK 500 SER B 224 -158.31 -157.47 REMARK 500 ARG B 291 18.67 83.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG B 291 LEU B 292 149.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 THE STARTING COMPOUND USED FOR CRYSTALLIZATION HAS A CHLORINE ATOM REMARK 600 ON POSITION C7 WHICH IS DEPARTING ATOM UPON REACTION WITH CYS 200 REMARK 600 (SEE LINK RECORDS REMARK) REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 UN9 A 305 REMARK 610 UN9 B 305 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 301 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 206 OD1 REMARK 620 2 HIS A 204 NE2 90.2 REMARK 620 3 HIS A 266 NE2 93.7 87.7 REMARK 620 4 HOH A 416 O 173.5 89.6 92.7 REMARK 620 5 HOH A 405 O 91.6 177.7 93.6 88.5 REMARK 620 6 HOH A 439 O 88.9 86.9 174.0 84.6 91.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 301 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 206 OD1 REMARK 620 2 HIS B 204 NE2 99.0 REMARK 620 3 HIS B 266 NE2 93.3 87.8 REMARK 620 4 HOH B 434 O 158.7 101.3 93.7 REMARK 620 5 HOH B 431 O 85.7 174.5 89.2 74.4 REMARK 620 6 HOH B 422 O 88.4 92.8 178.2 84.4 90.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UN9 A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UN9 B 305 DBREF 4NJ4 A 66 292 UNP Q6P6C2 ALKB5_HUMAN 66 292 DBREF 4NJ4 B 66 292 UNP Q6P6C2 ALKB5_HUMAN 66 292 SEQADV 4NJ4 MET A 43 UNP Q6P6C2 INITIATING METHIONINE SEQADV 4NJ4 HIS A 44 UNP Q6P6C2 EXPRESSION TAG SEQADV 4NJ4 HIS A 45 UNP Q6P6C2 EXPRESSION TAG SEQADV 4NJ4 HIS A 46 UNP Q6P6C2 EXPRESSION TAG SEQADV 4NJ4 HIS A 47 UNP Q6P6C2 EXPRESSION TAG SEQADV 4NJ4 HIS A 48 UNP Q6P6C2 EXPRESSION TAG SEQADV 4NJ4 HIS A 49 UNP Q6P6C2 EXPRESSION TAG SEQADV 4NJ4 SER A 50 UNP Q6P6C2 EXPRESSION TAG SEQADV 4NJ4 SER A 51 UNP Q6P6C2 EXPRESSION TAG SEQADV 4NJ4 GLY A 52 UNP Q6P6C2 EXPRESSION TAG SEQADV 4NJ4 VAL A 53 UNP Q6P6C2 EXPRESSION TAG SEQADV 4NJ4 ASP A 54 UNP Q6P6C2 EXPRESSION TAG SEQADV 4NJ4 LEU A 55 UNP Q6P6C2 EXPRESSION TAG SEQADV 4NJ4 GLY A 56 UNP Q6P6C2 EXPRESSION TAG SEQADV 4NJ4 THR A 57 UNP Q6P6C2 EXPRESSION TAG SEQADV 4NJ4 GLU A 58 UNP Q6P6C2 EXPRESSION TAG SEQADV 4NJ4 ASN A 59 UNP Q6P6C2 EXPRESSION TAG SEQADV 4NJ4 LEU A 60 UNP Q6P6C2 EXPRESSION TAG SEQADV 4NJ4 TYR A 61 UNP Q6P6C2 EXPRESSION TAG SEQADV 4NJ4 PHE A 62 UNP Q6P6C2 EXPRESSION TAG SEQADV 4NJ4 GLN A 63 UNP Q6P6C2 EXPRESSION TAG SEQADV 4NJ4 SER A 64 UNP Q6P6C2 EXPRESSION TAG SEQADV 4NJ4 MET A 65 UNP Q6P6C2 EXPRESSION TAG SEQADV 4NJ4 MET B 43 UNP Q6P6C2 INITIATING METHIONINE SEQADV 4NJ4 HIS B 44 UNP Q6P6C2 EXPRESSION TAG SEQADV 4NJ4 HIS B 45 UNP Q6P6C2 EXPRESSION TAG SEQADV 4NJ4 HIS B 46 UNP Q6P6C2 EXPRESSION TAG SEQADV 4NJ4 HIS B 47 UNP Q6P6C2 EXPRESSION TAG SEQADV 4NJ4 HIS B 48 UNP Q6P6C2 EXPRESSION TAG SEQADV 4NJ4 HIS B 49 UNP Q6P6C2 EXPRESSION TAG SEQADV 4NJ4 SER B 50 UNP Q6P6C2 EXPRESSION TAG SEQADV 4NJ4 SER B 51 UNP Q6P6C2 EXPRESSION TAG SEQADV 4NJ4 GLY B 52 UNP Q6P6C2 EXPRESSION TAG SEQADV 4NJ4 VAL B 53 UNP Q6P6C2 EXPRESSION TAG SEQADV 4NJ4 ASP B 54 UNP Q6P6C2 EXPRESSION TAG SEQADV 4NJ4 LEU B 55 UNP Q6P6C2 EXPRESSION TAG SEQADV 4NJ4 GLY B 56 UNP Q6P6C2 EXPRESSION TAG SEQADV 4NJ4 THR B 57 UNP Q6P6C2 EXPRESSION TAG SEQADV 4NJ4 GLU B 58 UNP Q6P6C2 EXPRESSION TAG SEQADV 4NJ4 ASN B 59 UNP Q6P6C2 EXPRESSION TAG SEQADV 4NJ4 LEU B 60 UNP Q6P6C2 EXPRESSION TAG SEQADV 4NJ4 TYR B 61 UNP Q6P6C2 EXPRESSION TAG SEQADV 4NJ4 PHE B 62 UNP Q6P6C2 EXPRESSION TAG SEQADV 4NJ4 GLN B 63 UNP Q6P6C2 EXPRESSION TAG SEQADV 4NJ4 SER B 64 UNP Q6P6C2 EXPRESSION TAG SEQADV 4NJ4 MET B 65 UNP Q6P6C2 EXPRESSION TAG SEQRES 1 A 250 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 250 GLY THR GLU ASN LEU TYR PHE GLN SER MET PRO GLU ARG SEQRES 3 A 250 SER ASP TYR GLU GLU GLN GLN LEU GLN LYS GLU GLU GLU SEQRES 4 A 250 ALA ARG LYS VAL LYS SER GLY ILE ARG GLN MET ARG LEU SEQRES 5 A 250 PHE SER GLN ASP GLU CYS ALA LYS ILE GLU ALA ARG ILE SEQRES 6 A 250 ASP GLU VAL VAL SER ARG ALA GLU LYS GLY LEU TYR ASN SEQRES 7 A 250 GLU HIS THR VAL ASP ARG ALA PRO LEU ARG ASN LYS TYR SEQRES 8 A 250 PHE PHE GLY GLU GLY TYR THR TYR GLY ALA GLN LEU GLN SEQRES 9 A 250 LYS ARG GLY PRO GLY GLN GLU ARG LEU TYR PRO PRO GLY SEQRES 10 A 250 ASP VAL ASP GLU ILE PRO GLU TRP VAL HIS GLN LEU VAL SEQRES 11 A 250 ILE GLN LYS LEU VAL GLU HIS ARG VAL ILE PRO GLU GLY SEQRES 12 A 250 PHE VAL ASN SER ALA VAL ILE ASN ASP TYR GLN PRO GLY SEQRES 13 A 250 GLY CYS ILE VAL SER HIS VAL ASP PRO ILE HIS ILE PHE SEQRES 14 A 250 GLU ARG PRO ILE VAL SER VAL SER PHE PHE SER ASP SER SEQRES 15 A 250 ALA LEU CYS PHE GLY CYS LYS PHE GLN PHE LYS PRO ILE SEQRES 16 A 250 ARG VAL SER GLU PRO VAL LEU SER LEU PRO VAL ARG ARG SEQRES 17 A 250 GLY SER VAL THR VAL LEU SER GLY TYR ALA ALA ASP GLU SEQRES 18 A 250 ILE THR HIS CYS ILE ARG PRO GLN ASP ILE LYS GLU ARG SEQRES 19 A 250 ARG ALA VAL ILE ILE LEU ARG LYS THR ARG LEU ASP ALA SEQRES 20 A 250 PRO ARG LEU SEQRES 1 B 250 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 B 250 GLY THR GLU ASN LEU TYR PHE GLN SER MET PRO GLU ARG SEQRES 3 B 250 SER ASP TYR GLU GLU GLN GLN LEU GLN LYS GLU GLU GLU SEQRES 4 B 250 ALA ARG LYS VAL LYS SER GLY ILE ARG GLN MET ARG LEU SEQRES 5 B 250 PHE SER GLN ASP GLU CYS ALA LYS ILE GLU ALA ARG ILE SEQRES 6 B 250 ASP GLU VAL VAL SER ARG ALA GLU LYS GLY LEU TYR ASN SEQRES 7 B 250 GLU HIS THR VAL ASP ARG ALA PRO LEU ARG ASN LYS TYR SEQRES 8 B 250 PHE PHE GLY GLU GLY TYR THR TYR GLY ALA GLN LEU GLN SEQRES 9 B 250 LYS ARG GLY PRO GLY GLN GLU ARG LEU TYR PRO PRO GLY SEQRES 10 B 250 ASP VAL ASP GLU ILE PRO GLU TRP VAL HIS GLN LEU VAL SEQRES 11 B 250 ILE GLN LYS LEU VAL GLU HIS ARG VAL ILE PRO GLU GLY SEQRES 12 B 250 PHE VAL ASN SER ALA VAL ILE ASN ASP TYR GLN PRO GLY SEQRES 13 B 250 GLY CYS ILE VAL SER HIS VAL ASP PRO ILE HIS ILE PHE SEQRES 14 B 250 GLU ARG PRO ILE VAL SER VAL SER PHE PHE SER ASP SER SEQRES 15 B 250 ALA LEU CYS PHE GLY CYS LYS PHE GLN PHE LYS PRO ILE SEQRES 16 B 250 ARG VAL SER GLU PRO VAL LEU SER LEU PRO VAL ARG ARG SEQRES 17 B 250 GLY SER VAL THR VAL LEU SER GLY TYR ALA ALA ASP GLU SEQRES 18 B 250 ILE THR HIS CYS ILE ARG PRO GLN ASP ILE LYS GLU ARG SEQRES 19 B 250 ARG ALA VAL ILE ILE LEU ARG LYS THR ARG LEU ASP ALA SEQRES 20 B 250 PRO ARG LEU HET MN A 301 1 HET NO3 A 302 4 HET GOL A 303 6 HET GOL A 304 6 HET UN9 A 305 18 HET MN B 301 1 HET NO3 B 302 4 HET NO3 B 303 4 HET GOL B 304 6 HET UN9 B 305 18 HETNAM MN MANGANESE (II) ION HETNAM NO3 NITRATE ION HETNAM GOL GLYCEROL HETNAM UN9 N-[(1-CHLORO-4-HYDROXYISOQUINOLIN-3-YL)CARBONYL]GLYCINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 MN 2(MN 2+) FORMUL 4 NO3 3(N O3 1-) FORMUL 5 GOL 3(C3 H8 O3) FORMUL 7 UN9 2(C12 H9 CL N2 O4) FORMUL 13 HOH *223(H2 O) HELIX 1 1 ASP A 70 SER A 87 1 18 HELIX 2 2 SER A 96 LYS A 116 1 21 HELIX 3 3 ASN A 120 HIS A 122 5 3 HELIX 4 4 PRO A 165 VAL A 172 1 8 HELIX 5 5 VAL A 172 HIS A 179 1 8 HELIX 6 6 CYS A 230 LYS A 235 5 6 HELIX 7 7 SER A 257 GLU A 263 1 7 HELIX 8 8 ARG A 269 ILE A 273 5 5 HELIX 9 9 GLU B 79 GLY B 88 1 10 HELIX 10 10 SER B 96 LYS B 116 1 21 HELIX 11 11 ASN B 120 HIS B 122 5 3 HELIX 12 12 PRO B 165 VAL B 172 1 8 HELIX 13 13 VAL B 172 HIS B 179 1 8 HELIX 14 14 CYS B 230 PHE B 234 5 5 HELIX 15 15 SER B 257 GLU B 263 1 7 HELIX 16 16 ARG B 269 ILE B 273 5 5 SHEET 1 A 7 ILE A 89 ARG A 93 0 SHEET 2 A 7 SER A 252 LEU A 256 -1 O VAL A 253 N MET A 92 SHEET 3 A 7 ILE A 215 PHE A 220 -1 N SER A 217 O THR A 254 SHEET 4 A 7 ARG A 277 ARG A 283 -1 O ALA A 278 N PHE A 220 SHEET 5 A 7 SER A 189 TYR A 195 -1 N VAL A 191 O ILE A 281 SHEET 6 A 7 ARG A 130 PHE A 135 -1 N ASN A 131 O ASP A 194 SHEET 7 A 7 VAL A 124 ALA A 127 -1 N ASP A 125 O LYS A 132 SHEET 1 B 2 TYR A 139 TYR A 141 0 SHEET 2 B 2 GLU A 153 LEU A 155 -1 O ARG A 154 N THR A 140 SHEET 1 C 4 ILE A 201 HIS A 204 0 SHEET 2 C 4 HIS A 266 ILE A 268 -1 O HIS A 266 N HIS A 204 SHEET 3 C 4 SER A 224 PHE A 228 -1 N CYS A 227 O CYS A 267 SHEET 4 C 4 LEU A 244 VAL A 248 -1 O LEU A 244 N PHE A 228 SHEET 1 D 7 ILE B 89 ARG B 93 0 SHEET 2 D 7 SER B 252 LEU B 256 -1 O VAL B 255 N ARG B 90 SHEET 3 D 7 ILE B 215 PHE B 220 -1 N ILE B 215 O LEU B 256 SHEET 4 D 7 ARG B 277 ARG B 283 -1 O LEU B 282 N VAL B 216 SHEET 5 D 7 SER B 189 TYR B 195 -1 N TYR B 195 O ARG B 277 SHEET 6 D 7 ARG B 130 PHE B 135 -1 N ASN B 131 O ASP B 194 SHEET 7 D 7 VAL B 124 ARG B 126 -1 N ASP B 125 O LYS B 132 SHEET 1 E 2 TYR B 139 THR B 140 0 SHEET 2 E 2 ARG B 154 LEU B 155 -1 O ARG B 154 N THR B 140 SHEET 1 F 4 ILE B 201 HIS B 204 0 SHEET 2 F 4 HIS B 266 ILE B 268 -1 O HIS B 266 N HIS B 204 SHEET 3 F 4 SER B 224 PHE B 228 -1 N CYS B 227 O CYS B 267 SHEET 4 F 4 LEU B 244 VAL B 248 -1 O LEU B 246 N LEU B 226 SSBOND 1 CYS A 230 CYS A 267 1555 1555 2.09 SSBOND 2 CYS B 230 CYS B 267 1555 1555 2.08 LINK OD1 ASP A 206 MN MN A 301 1555 1555 2.23 LINK OD1 ASP B 206 MN MN B 301 1555 1555 2.24 LINK NE2 HIS B 204 MN MN B 301 1555 1555 2.24 LINK NE2 HIS A 204 MN MN A 301 1555 1555 2.29 LINK NE2 HIS A 266 MN MN A 301 1555 1555 2.33 LINK NE2 HIS B 266 MN MN B 301 1555 1555 2.40 LINK MN MN A 301 O HOH A 416 1555 1555 2.21 LINK MN MN B 301 O HOH B 434 1555 1555 2.22 LINK MN MN B 301 O HOH B 431 1555 1555 2.23 LINK MN MN B 301 O HOH B 422 1555 1555 2.24 LINK MN MN A 301 O HOH A 405 1555 1555 2.25 LINK MN MN A 301 O HOH A 439 1555 1555 2.30 LINK SG CYS B 200 C7 UN9 B 305 1555 1555 1.77 LINK SG CYS A 200 C7 UN9 A 305 1555 1555 1.81 CISPEP 1 ARG A 213 PRO A 214 0 6.09 CISPEP 2 ARG B 213 PRO B 214 0 4.99 SITE 1 AC1 6 HIS A 204 ASP A 206 HIS A 266 HOH A 405 SITE 2 AC1 6 HOH A 416 HOH A 439 SITE 1 AC2 5 SER A 217 ILE A 268 ARG A 277 HOH A 478 SITE 2 AC2 5 HOH A 542 SITE 1 AC3 4 GLU A 212 ARG A 286 LEU A 287 ASP A 288 SITE 1 AC4 5 ILE A 201 VAL A 202 HIS A 204 UN9 A 305 SITE 2 AC4 5 HOH A 532 SITE 1 AC5 8 ARG A 130 CYS A 200 ILE A 201 VAL A 202 SITE 2 AC5 8 GLN A 233 GOL A 304 CYS B 200 UN9 B 305 SITE 1 AC6 6 HIS B 204 ASP B 206 HIS B 266 HOH B 422 SITE 2 AC6 6 HOH B 431 HOH B 434 SITE 1 AC7 4 SER B 217 ILE B 268 ARG B 277 HOH B 479 SITE 1 AC8 5 GLN A 271 HOH A 428 LYS B 235 PRO B 236 SITE 2 AC8 5 ILE B 237 SITE 1 AC9 3 ARG A 93 GLU B 166 GLU B 184 SITE 1 BC1 8 CYS A 200 UN9 A 305 ARG B 130 CYS B 200 SITE 2 BC1 8 ILE B 201 VAL B 202 GLN B 233 HOH B 480 CRYST1 67.100 82.660 89.171 90.00 90.00 90.00 P 2 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014903 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012098 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011214 0.00000