PDB Short entry for 4NM7 HEADER TRANSFERASE/PEPTIDE 14-NOV-13 4NM7 TITLE CRYSTAL STRUCTURE OF GSK-3/AXIN COMPLEX BOUND TO PHOSPHORYLATED WNT TITLE 2 RECEPTOR LRP6 E-MOTIF COMPND MOL_ID: 1; COMPND 2 MOLECULE: GSK3B PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 13-383; COMPND 5 SYNONYM: GSK3BETA ISOFORM, GLYCOGEN SYNTHASE KINASE 3 BETA, ISOFORM COMPND 6 CRA_B, CDNA FLJ75266, HIGHLY SIMILAR TO HOMO SAPIENS GLYCOGEN COMPND 7 SYNTHASE KINASE 3 BETA, MRNA; COMPND 8 EC: 2.7.11.26; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: AXIN-1; COMPND 12 CHAIN: B; COMPND 13 FRAGMENT: RESIDUES 383-402; COMPND 14 SYNONYM: AXIS INHIBITION PROTEIN 1, HAXIN; COMPND 15 ENGINEERED: YES; COMPND 16 MOL_ID: 3; COMPND 17 MOLECULE: PHOSPHORYLATED WNT RECEPTOR LRP6 E-MOTIF; COMPND 18 CHAIN: C; COMPND 19 FRAGMENT: RESIDUES 1603-1610; COMPND 20 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GSK3B, HCG_1818062; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) CODON-PLUS RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET29B(+); SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: AXIN1, AXIN; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) CODON-PLUS RIL; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: MODIFIED PGEX-KG; SOURCE 21 MOL_ID: 3; SOURCE 22 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 23 ORGANISM_TAXID: 9606; SOURCE 24 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 25 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 26 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) CODON-PLUS RIL; SOURCE 27 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 28 EXPRESSION_SYSTEM_PLASMID: PET29B(+) KEYWDS WNT, LRP6, AUTO-INHIBITED, GSK-3, PRIMED SUBSTRATE, KINASE, AXIN, KEYWDS 2 PHOSPHORYLATED WNT RECEPTOR LRP6 E-MOTIF, TRANSFERASE-PEPTIDE KEYWDS 3 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.L.STAMOS,M.L.-H.CHU,M.D.ENOS,N.SHAH,W.I.WEIS REVDAT 3 20-SEP-23 4NM7 1 REMARK SEQADV LINK REVDAT 2 23-APR-14 4NM7 1 JRNL REVDAT 1 26-MAR-14 4NM7 0 JRNL AUTH J.L.STAMOS,M.L.CHU,M.D.ENOS,N.SHAH,W.I.WEIS JRNL TITL STRUCTURAL BASIS OF GSK-3 INHIBITION BY N-TERMINAL JRNL TITL 2 PHOSPHORYLATION AND BY THE WNT RECEPTOR LRP6. JRNL REF ELIFE V. 3 01998 2014 JRNL REFN ESSN 2050-084X JRNL PMID 24642411 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.35 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.910 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 25838 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1292 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.3578 - 4.7818 1.00 2984 158 0.1715 0.1960 REMARK 3 2 4.7818 - 3.7964 1.00 2787 155 0.1395 0.1954 REMARK 3 3 3.7964 - 3.3168 1.00 2740 138 0.1723 0.2431 REMARK 3 4 3.3168 - 3.0137 1.00 2727 117 0.1989 0.2609 REMARK 3 5 3.0137 - 2.7977 1.00 2704 145 0.2252 0.2722 REMARK 3 6 2.7977 - 2.6328 1.00 2658 143 0.2246 0.3086 REMARK 3 7 2.6328 - 2.5010 1.00 2673 135 0.2517 0.3453 REMARK 3 8 2.5010 - 2.3921 1.00 2627 159 0.2906 0.3517 REMARK 3 9 2.3921 - 2.3000 1.00 2646 142 0.3451 0.3753 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 60.05 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 70.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3188 REMARK 3 ANGLE : 0.759 4352 REMARK 3 CHIRALITY : 0.050 493 REMARK 3 PLANARITY : 0.004 556 REMARK 3 DIHEDRAL : 12.227 1178 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 25:74 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.3020 47.1148 2.4315 REMARK 3 T TENSOR REMARK 3 T11: 0.5595 T22: 0.7399 REMARK 3 T33: 0.5092 T12: -0.1797 REMARK 3 T13: 0.1250 T23: -0.0805 REMARK 3 L TENSOR REMARK 3 L11: 6.7402 L22: 4.5902 REMARK 3 L33: 5.6228 L12: 0.7198 REMARK 3 L13: -0.8408 L23: -1.3069 REMARK 3 S TENSOR REMARK 3 S11: -0.3069 S12: -0.3147 S13: 0.9039 REMARK 3 S21: 0.2063 S22: 0.1724 S23: 0.3564 REMARK 3 S31: -0.3848 S32: 0.2098 S33: 0.1307 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 75:138 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.8202 41.7840 -4.3785 REMARK 3 T TENSOR REMARK 3 T11: 0.4036 T22: 0.6218 REMARK 3 T33: 0.5058 T12: -0.1642 REMARK 3 T13: 0.0418 T23: 0.1282 REMARK 3 L TENSOR REMARK 3 L11: 6.3188 L22: 6.3795 REMARK 3 L33: 4.2757 L12: -1.2069 REMARK 3 L13: -1.3534 L23: 4.0846 REMARK 3 S TENSOR REMARK 3 S11: 0.1086 S12: 0.3220 S13: 0.2912 REMARK 3 S21: 0.0272 S22: -0.2493 S23: 0.7911 REMARK 3 S31: -0.0557 S32: -0.1564 S33: 0.1375 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 139:218 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.1953 33.2978 -14.6389 REMARK 3 T TENSOR REMARK 3 T11: 0.4008 T22: 0.3525 REMARK 3 T33: 0.3660 T12: -0.0142 REMARK 3 T13: -0.0360 T23: -0.0114 REMARK 3 L TENSOR REMARK 3 L11: 8.4084 L22: 3.6413 REMARK 3 L33: 4.4317 L12: -0.0636 REMARK 3 L13: 1.0984 L23: -0.2577 REMARK 3 S TENSOR REMARK 3 S11: 0.0754 S12: -0.3308 S13: -0.1587 REMARK 3 S21: 0.0815 S22: -0.0118 S23: 0.0249 REMARK 3 S31: 0.3573 S32: -0.2047 S33: -0.0615 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN A AND RESID 219:384 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.3016 27.0388 -24.9587 REMARK 3 T TENSOR REMARK 3 T11: 0.5896 T22: 0.2981 REMARK 3 T33: 0.5717 T12: 0.0076 REMARK 3 T13: -0.1009 T23: -0.0492 REMARK 3 L TENSOR REMARK 3 L11: 2.8071 L22: 2.2144 REMARK 3 L33: 6.3216 L12: 0.6182 REMARK 3 L13: -0.3199 L23: -1.1095 REMARK 3 S TENSOR REMARK 3 S11: 0.0242 S12: -0.0916 S13: -0.6369 REMARK 3 S21: -0.2614 S22: 0.0593 S23: 0.0496 REMARK 3 S31: 0.9181 S32: 0.0183 S33: -0.0622 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN B AND RESID 383:401 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.5783 43.4152 -44.2255 REMARK 3 T TENSOR REMARK 3 T11: 0.9541 T22: 0.3975 REMARK 3 T33: 0.5389 T12: -0.1079 REMARK 3 T13: -0.0758 T23: 0.0156 REMARK 3 L TENSOR REMARK 3 L11: 3.0962 L22: 6.2782 REMARK 3 L33: 9.4772 L12: -0.2737 REMARK 3 L13: 0.6258 L23: -3.1973 REMARK 3 S TENSOR REMARK 3 S11: 0.4961 S12: 1.1162 S13: 0.9579 REMARK 3 S21: -0.6858 S22: -0.1519 S23: 0.1708 REMARK 3 S31: -0.3249 S32: 0.1201 S33: -0.2698 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN C AND RESID 1604:1609 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.9253 44.7492 -22.6669 REMARK 3 T TENSOR REMARK 3 T11: 0.9250 T22: 1.2714 REMARK 3 T33: 1.3107 T12: 0.1694 REMARK 3 T13: -0.2484 T23: -0.0656 REMARK 3 L TENSOR REMARK 3 L11: 9.6810 L22: 9.7730 REMARK 3 L33: 3.3268 L12: 8.1723 REMARK 3 L13: 5.4313 L23: 3.6879 REMARK 3 S TENSOR REMARK 3 S11: 0.8079 S12: -0.9678 S13: 0.3412 REMARK 3 S21: 0.4060 S22: -0.2715 S23: -1.3412 REMARK 3 S31: -0.6271 S32: -1.0520 S33: -0.3993 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4NM7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-DEC-13. REMARK 100 THE DEPOSITION ID IS D_1000083377. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SI(III) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.1.26 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25932 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 39.352 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 18.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.13600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 18.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 4.30700 REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1O9U REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 35,000, 20MM TRIS 7.5, 300MM REMARK 280 NACL, 5% GLYCEROL, 10MM MGCL2, 200UM ATP, AND 5MM DTT, REMARK 280 MICRODIALYSIS, TEMPERATURE 277K, PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 93.44833 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 186.89667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 140.17250 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 233.62083 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 46.72417 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 93.44833 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 186.89667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 233.62083 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 140.17250 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 46.72417 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -64.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 588 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 13 REMARK 465 CYS A 14 REMARK 465 LYS A 15 REMARK 465 PRO A 16 REMARK 465 VAL A 17 REMARK 465 GLN A 18 REMARK 465 GLN A 19 REMARK 465 PRO A 20 REMARK 465 SER A 21 REMARK 465 ALA A 22 REMARK 465 PHE A 23 REMARK 465 GLY A 24 REMARK 465 LYS A 32 REMARK 465 ASP A 33 REMARK 465 GLY A 34 REMARK 465 GLY A 120 REMARK 465 GLU A 121 REMARK 465 HIS A 385 REMARK 465 HIS A 386 REMARK 465 HIS A 387 REMARK 465 HIS A 388 REMARK 465 HIS A 389 REMARK 465 GLY B 379 REMARK 465 GLY B 380 REMARK 465 ILE B 381 REMARK 465 LEU B 382 REMARK 465 THR B 402 REMARK 465 MET C 1602 REMARK 465 PRO C 1603 REMARK 465 THR C 1610 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 27 CG CD CE NZ REMARK 470 VAL A 28 CG1 CG2 REMARK 470 ARG A 30 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 31 CG OD1 OD2 REMARK 470 SER A 35 OG REMARK 470 GLN A 46 CG CD OE1 NE2 REMARK 470 LYS A 91 CG CD CE NZ REMARK 470 LYS A 122 CG CD CE NZ REMARK 470 LYS A 123 CG CD CE NZ REMARK 470 ASP A 124 CG OD1 OD2 REMARK 470 GLU A 125 CG CD OE1 OE2 REMARK 470 ARG A 209 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 292 CG CD CE NZ REMARK 470 LYS A 297 CG CD CE NZ REMARK 470 ARG A 306 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 308 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 349 CG CD CE NZ REMARK 470 HIS A 384 CG ND1 CD2 CE1 NE2 REMARK 470 ARG B 401 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 593 O HOH A 594 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 29 -167.40 -120.88 REMARK 500 GLN A 89 87.31 -68.65 REMARK 500 ASP A 181 41.45 -153.63 REMARK 500 ASP A 200 88.60 62.82 REMARK 500 CYS A 218 153.73 68.54 REMARK 500 CYS A 218 153.43 68.99 REMARK 500 TYR A 221 -25.93 84.67 REMARK 500 THR A 235 -166.90 -121.11 REMARK 500 PRO A 357 176.78 -59.37 REMARK 500 ASN A 370 74.53 -161.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 406 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 186 OD1 REMARK 620 2 ASP A 200 OD2 95.4 REMARK 620 3 ADP A 401 O1A 88.1 84.4 REMARK 620 4 ADP A 401 O1B 169.0 83.7 80.9 REMARK 620 5 HOH A 571 O 93.8 81.9 166.4 96.9 REMARK 620 6 HOH A 582 O 84.5 177.4 92.9 95.9 100.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 405 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 200 OD1 REMARK 620 2 ADP A 401 O2B 75.9 REMARK 620 3 HOH A 513 O 73.8 121.3 REMARK 620 4 HOH A 539 O 108.3 75.5 68.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DTT A 408 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4NM0 RELATED DB: PDB REMARK 900 THE SAME PROTEIN IS A PEPTIDE INHIBITOR-FREE GSK-3/AXIN COMPLEX REMARK 900 RELATED ID: 4NM3 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH ITS OWN PHOSPHORYLATED N-TERMINAL REMARK 900 AUTO-INHIBITORY PS9 PEPTIDE REMARK 900 RELATED ID: 4NM5 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH PHOSPHORYLATED WNT RECEPTOR LRP6 C- REMARK 900 MOTIF REMARK 900 RELATED ID: 4NU1 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH ITS OWN PHOSPHORYLATED N-TERMINAL REMARK 900 AUTO-INHIBITORY PS9 PEPTIDE AND ALF3 IS A TRANSITION STATE MIMICRY DBREF 4NM7 A 13 383 UNP Q6FI27 Q6FI27_HUMAN 13 383 DBREF 4NM7 B 383 402 UNP O15169 AXIN1_HUMAN 383 402 DBREF 4NM7 C 1602 1610 PDB 4NM7 4NM7 1602 1610 SEQADV 4NM7 HIS A 384 UNP Q6FI27 EXPRESSION TAG SEQADV 4NM7 HIS A 385 UNP Q6FI27 EXPRESSION TAG SEQADV 4NM7 HIS A 386 UNP Q6FI27 EXPRESSION TAG SEQADV 4NM7 HIS A 387 UNP Q6FI27 EXPRESSION TAG SEQADV 4NM7 HIS A 388 UNP Q6FI27 EXPRESSION TAG SEQADV 4NM7 HIS A 389 UNP Q6FI27 EXPRESSION TAG SEQADV 4NM7 GLY B 379 UNP O15169 EXPRESSION TAG SEQADV 4NM7 GLY B 380 UNP O15169 EXPRESSION TAG SEQADV 4NM7 ILE B 381 UNP O15169 EXPRESSION TAG SEQADV 4NM7 LEU B 382 UNP O15169 EXPRESSION TAG SEQRES 1 A 377 SER CYS LYS PRO VAL GLN GLN PRO SER ALA PHE GLY SER SEQRES 2 A 377 MET LYS VAL SER ARG ASP LYS ASP GLY SER LYS VAL THR SEQRES 3 A 377 THR VAL VAL ALA THR PRO GLY GLN GLY PRO ASP ARG PRO SEQRES 4 A 377 GLN GLU VAL SER TYR THR ASP THR LYS VAL ILE GLY ASN SEQRES 5 A 377 GLY SER PHE GLY VAL VAL TYR GLN ALA LYS LEU CYS ASP SEQRES 6 A 377 SER GLY GLU LEU VAL ALA ILE LYS LYS VAL LEU GLN ASP SEQRES 7 A 377 LYS ARG PHE LYS ASN ARG GLU LEU GLN ILE MET ARG LYS SEQRES 8 A 377 LEU ASP HIS CYS ASN ILE VAL ARG LEU ARG TYR PHE PHE SEQRES 9 A 377 TYR SER SER GLY GLU LYS LYS ASP GLU VAL TYR LEU ASN SEQRES 10 A 377 LEU VAL LEU ASP TYR VAL PRO GLU THR VAL TYR ARG VAL SEQRES 11 A 377 ALA ARG HIS TYR SER ARG ALA LYS GLN THR LEU PRO VAL SEQRES 12 A 377 ILE TYR VAL LYS LEU TYR MET TYR GLN LEU PHE ARG SER SEQRES 13 A 377 LEU ALA TYR ILE HIS SER PHE GLY ILE CYS HIS ARG ASP SEQRES 14 A 377 ILE LYS PRO GLN ASN LEU LEU LEU ASP PRO ASP THR ALA SEQRES 15 A 377 VAL LEU LYS LEU CYS ASP PHE GLY SER ALA LYS GLN LEU SEQRES 16 A 377 VAL ARG GLY GLU PRO ASN VAL SER TYR ILE CYS SER ARG SEQRES 17 A 377 TYR TYR ARG ALA PRO GLU LEU ILE PHE GLY ALA THR ASP SEQRES 18 A 377 TYR THR SER SER ILE ASP VAL TRP SER ALA GLY CYS VAL SEQRES 19 A 377 LEU ALA GLU LEU LEU LEU GLY GLN PRO ILE PHE PRO GLY SEQRES 20 A 377 ASP SER GLY VAL ASP GLN LEU VAL GLU ILE ILE LYS VAL SEQRES 21 A 377 LEU GLY THR PRO THR ARG GLU GLN ILE ARG GLU MET ASN SEQRES 22 A 377 PRO ASN TYR THR GLU PHE LYS PHE PRO GLN ILE LYS ALA SEQRES 23 A 377 HIS PRO TRP THR LYS VAL PHE ARG PRO ARG THR PRO PRO SEQRES 24 A 377 GLU ALA ILE ALA LEU CYS SER ARG LEU LEU GLU TYR THR SEQRES 25 A 377 PRO THR ALA ARG LEU THR PRO LEU GLU ALA CYS ALA HIS SEQRES 26 A 377 SER PHE PHE ASP GLU LEU ARG ASP PRO ASN VAL LYS LEU SEQRES 27 A 377 PRO ASN GLY ARG ASP THR PRO ALA LEU PHE ASN PHE THR SEQRES 28 A 377 THR GLN GLU LEU SER SER ASN PRO PRO LEU ALA THR ILE SEQRES 29 A 377 LEU ILE PRO PRO HIS ALA ARG HIS HIS HIS HIS HIS HIS SEQRES 1 B 24 GLY GLY ILE LEU VAL GLU PRO GLN LYS PHE ALA GLU GLU SEQRES 2 B 24 LEU ILE HIS ARG LEU GLU ALA VAL GLN ARG THR SEQRES 1 C 9 MET PRO PRO PRO PRO SEP PRO CYS THR MODRES 4NM7 SEP C 1607 SER PHOSPHOSERINE HET SEP C1607 10 HET ADP A 401 27 HET GOL A 402 6 HET GOL A 403 6 HET GOL A 404 6 HET MG A 405 1 HET MG A 406 1 HET CL A 407 1 HET DTT A 408 8 HETNAM SEP PHOSPHOSERINE HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM GOL GLYCEROL HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION HETNAM DTT 2,3-DIHYDROXY-1,4-DITHIOBUTANE HETSYN SEP PHOSPHONOSERINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN DTT 1,4-DITHIOTHREITOL FORMUL 3 SEP C3 H8 N O6 P FORMUL 4 ADP C10 H15 N5 O10 P2 FORMUL 5 GOL 3(C3 H8 O3) FORMUL 8 MG 2(MG 2+) FORMUL 10 CL CL 1- FORMUL 11 DTT C4 H10 O2 S2 FORMUL 12 HOH *106(H2 O) HELIX 1 1 ARG A 96 ARG A 102 1 7 HELIX 2 2 VAL A 139 ALA A 149 1 11 HELIX 3 3 PRO A 154 SER A 174 1 21 HELIX 4 4 LYS A 183 GLN A 185 5 3 HELIX 5 5 ALA A 224 PHE A 229 1 6 HELIX 6 6 SER A 236 GLY A 253 1 18 HELIX 7 7 SER A 261 GLY A 274 1 14 HELIX 8 8 THR A 277 ASN A 285 1 9 HELIX 9 9 PRO A 286 THR A 289 5 4 HELIX 10 10 PRO A 300 PHE A 305 1 6 HELIX 11 11 PRO A 310 ARG A 319 1 10 HELIX 12 12 THR A 324 ARG A 328 5 5 HELIX 13 13 THR A 330 ALA A 336 1 7 HELIX 14 14 HIS A 337 ASP A 345 5 9 HELIX 15 15 ASN A 370 PRO A 372 5 3 HELIX 16 16 LEU A 373 ILE A 378 1 6 HELIX 17 17 PRO A 379 ARG A 383 5 5 HELIX 18 18 GLU B 384 GLN B 400 1 17 SHEET 1 A 8 LYS A 27 SER A 29 0 SHEET 2 A 8 VAL A 37 PRO A 44 -1 O VAL A 37 N SER A 29 SHEET 3 A 8 LEU A 112 SER A 118 -1 O PHE A 115 N THR A 43 SHEET 4 A 8 TYR A 127 ASP A 133 -1 O TYR A 127 N SER A 118 SHEET 5 A 8 LEU A 81 LEU A 88 -1 N ALA A 83 O LEU A 132 SHEET 6 A 8 GLY A 68 LEU A 75 -1 N VAL A 69 O LYS A 86 SHEET 7 A 8 GLN A 52 GLY A 65 -1 N LYS A 60 O GLN A 72 SHEET 8 A 8 VAL A 37 PRO A 44 -1 N THR A 38 O TYR A 56 SHEET 1 B 3 GLU A 137 THR A 138 0 SHEET 2 B 3 LEU A 187 ASP A 190 -1 O LEU A 189 N GLU A 137 SHEET 3 B 3 VAL A 195 LEU A 198 -1 O LYS A 197 N LEU A 188 SHEET 1 C 2 ILE A 177 CYS A 178 0 SHEET 2 C 2 LYS A 205 GLN A 206 -1 O LYS A 205 N CYS A 178 LINK C PRO C1606 N SEP C1607 1555 1555 1.33 LINK C SEP C1607 N PRO C1608 1555 1555 1.34 LINK OD1 ASN A 186 MG MG A 406 1555 1555 2.39 LINK OD1 ASP A 200 MG MG A 405 1555 1555 2.34 LINK OD2 ASP A 200 MG MG A 406 1555 1555 2.17 LINK O2B ADP A 401 MG MG A 405 1555 1555 2.28 LINK O1A ADP A 401 MG MG A 406 1555 1555 2.09 LINK O1B ADP A 401 MG MG A 406 1555 1555 2.20 LINK MG MG A 405 O HOH A 513 1555 1555 2.92 LINK MG MG A 405 O HOH A 539 1555 1555 2.56 LINK MG MG A 406 O HOH A 571 1555 1555 2.29 LINK MG MG A 406 O HOH A 582 1555 1555 2.20 SITE 1 AC1 22 ASN A 64 PHE A 67 GLY A 68 VAL A 70 SITE 2 AC1 22 ALA A 83 LYS A 85 VAL A 110 LEU A 132 SITE 3 AC1 22 ASP A 133 TYR A 134 VAL A 135 THR A 138 SITE 4 AC1 22 ARG A 141 GLN A 185 ASN A 186 LEU A 188 SITE 5 AC1 22 ASP A 200 MG A 405 MG A 406 HOH A 539 SITE 6 AC1 22 HOH A 566 HOH A 582 SITE 1 AC2 4 TYR A 56 LYS A 86 SER A 118 ASN A 129 SITE 1 AC3 7 ARG A 144 SER A 147 ARG A 148 LEU A 252 SITE 2 AC3 7 GLN A 254 PRO A 255 VAL A 304 SITE 1 AC4 3 ARG A 148 LYS A 271 HIS A 299 SITE 1 AC5 4 ASP A 200 ADP A 401 HOH A 513 HOH A 539 SITE 1 AC6 5 ASN A 186 ASP A 200 ADP A 401 HOH A 571 SITE 2 AC6 5 HOH A 582 SITE 1 AC7 1 LYS A 297 SITE 1 AC8 5 ARG A 319 THR A 326 ALA A 327 ARG A 328 SITE 2 AC8 5 GLU A 333 CRYST1 82.002 82.002 280.345 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012195 0.007041 0.000000 0.00000 SCALE2 0.000000 0.014081 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003567 0.00000