PDB Short entry for 4O12 HEADER TRANSFERASE/TRANSFERASE INHIBITOR 14-DEC-13 4O12 TITLE STRUCTURAL AND BIOCHEMICAL ANALYSES OF THE CATALYSIS AND POTENCY TITLE 2 IMPACT OF INHIBITOR PHOSPHORIBOSYLATION BY HUMAN NICOTINAMIDE TITLE 3 PHOSPHORIBOSYLTRANSFERASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NICOTINAMIDE PHOSPHORIBOSYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: NAMPRTASE, NAMPT, PRE-B-CELL COLONY-ENHANCING FACTOR 1, PRE- COMPND 5 B CELL-ENHANCING FACTOR, VISFATIN; COMPND 6 EC: 2.4.2.12; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NAMPT, PBEF, PBEF1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.OH,W.WANG REVDAT 1 18-JUN-14 4O12 0 JRNL AUTH A.OH,Y.C.HO,M.ZAK,Y.LIU,X.CHEN,P.W.YUEN,X.ZHENG,Y.LIU, JRNL AUTH 2 P.S.DRAGOVICH,W.WANG JRNL TITL STRUCTURAL AND BIOCHEMICAL ANALYSES OF THE CATALYSIS AND JRNL TITL 2 POTENCY IMPACT OF INHIBITOR PHOSPHORIBOSYLATION BY HUMAN JRNL TITL 3 NICOTINAMIDE PHOSPHORIBOSYLTRANSFERASE. JRNL REF CHEMBIOCHEM V. 15 1121 2014 JRNL REFN ISSN 1439-4227 JRNL PMID 24797455 JRNL DOI 10.1002/CBIC.201402023 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.76 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 36155 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1805 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.7671 - 5.8690 1.00 2721 134 0.2096 0.2431 REMARK 3 2 5.8690 - 4.6600 1.00 2639 162 0.1927 0.2197 REMARK 3 3 4.6600 - 4.0714 1.00 2659 149 0.1744 0.2030 REMARK 3 4 4.0714 - 3.6993 1.00 2677 156 0.1914 0.2517 REMARK 3 5 3.6993 - 3.4343 1.00 2653 127 0.2009 0.2360 REMARK 3 6 3.4343 - 3.2318 1.00 2625 130 0.2131 0.2520 REMARK 3 7 3.2318 - 3.0700 1.00 2662 145 0.2087 0.2668 REMARK 3 8 3.0700 - 2.9364 1.00 2658 141 0.2291 0.2568 REMARK 3 9 2.9364 - 2.8234 1.00 2655 148 0.2349 0.3038 REMARK 3 10 2.8234 - 2.7260 1.00 2658 118 0.2399 0.3250 REMARK 3 11 2.7260 - 2.6408 1.00 2636 141 0.2387 0.3231 REMARK 3 12 2.6408 - 2.5653 1.00 2669 124 0.2443 0.3160 REMARK 3 13 2.5653 - 2.4980 0.93 2438 130 0.2487 0.3223 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.640 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 7874 REMARK 3 ANGLE : 0.779 10665 REMARK 3 CHIRALITY : 0.051 1157 REMARK 3 PLANARITY : 0.003 1356 REMARK 3 DIHEDRAL : 11.865 2903 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 8:488 ) OR (CHAIN B AND (RESID 8: REMARK 3 488 OR RESID 603:603 ) ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.4457 1.1169 22.6788 REMARK 3 T TENSOR REMARK 3 T11: 0.0373 T22: 0.0194 REMARK 3 T33: 0.0251 T12: 0.0015 REMARK 3 T13: -0.0033 T23: 0.0028 REMARK 3 L TENSOR REMARK 3 L11: 0.1544 L22: 0.0688 REMARK 3 L33: 0.1623 L12: 0.0277 REMARK 3 L13: 0.0054 L23: 0.0478 REMARK 3 S TENSOR REMARK 3 S11: 0.0355 S12: -0.0187 S13: -0.0032 REMARK 3 S21: -0.0186 S22: 0.0233 S23: -0.0522 REMARK 3 S31: -0.0177 S32: 0.0390 S33: 0.1004 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4O12 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JAN-14. REMARK 100 THE RCSB ID CODE IS RCSB083907. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 8.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : SIDE SCATTERING I-BEAM BENT REMARK 200 SINGLE CRYSTAL; ASYMMETRIC CUT REMARK 200 4.9650 DEG. REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36190 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.498 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM PHOSPHATE, PH 8.6, 25% REMARK 280 POLYETHYLENE GLYCOL 3350, 0.2M NACL AND 1MM COMPOUND, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 53.25250 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 PRO A 3 REMARK 465 ALA A 4 REMARK 465 ALA A 5 REMARK 465 GLU A 6 REMARK 465 ALA A 7 REMARK 465 THR A 44 REMARK 465 GLU A 45 REMARK 465 ASN A 46 REMARK 465 SER A 47 REMARK 465 LYS A 48 REMARK 465 LEU A 49 REMARK 465 ARG A 50 REMARK 465 LYS A 51 REMARK 465 VAL A 52 REMARK 465 ALA A 489 REMARK 465 HIS A 490 REMARK 465 HIS A 491 REMARK 465 LEU A 492 REMARK 465 GLU A 493 REMARK 465 HIS A 494 REMARK 465 HIS A 495 REMARK 465 HIS A 496 REMARK 465 HIS A 497 REMARK 465 HIS A 498 REMARK 465 HIS A 499 REMARK 465 HIS A 500 REMARK 465 HIS A 501 REMARK 465 MET B 1 REMARK 465 ASN B 2 REMARK 465 PRO B 3 REMARK 465 ALA B 4 REMARK 465 ALA B 5 REMARK 465 GLU B 6 REMARK 465 ALA B 7 REMARK 465 LYS B 42 REMARK 465 LYS B 43 REMARK 465 THR B 44 REMARK 465 GLU B 45 REMARK 465 ASN B 46 REMARK 465 SER B 47 REMARK 465 LYS B 48 REMARK 465 LEU B 49 REMARK 465 ARG B 50 REMARK 465 LYS B 51 REMARK 465 ALA B 489 REMARK 465 HIS B 490 REMARK 465 HIS B 491 REMARK 465 LEU B 492 REMARK 465 GLU B 493 REMARK 465 HIS B 494 REMARK 465 HIS B 495 REMARK 465 HIS B 496 REMARK 465 HIS B 497 REMARK 465 HIS B 498 REMARK 465 HIS B 499 REMARK 465 HIS B 500 REMARK 465 HIS B 501 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 42 CG CD CE NZ REMARK 470 LYS A 43 CG CD CE NZ REMARK 470 LYS A 53 CG CD CE NZ REMARK 470 GLU A 487 CG CD OE1 OE2 REMARK 470 VAL B 52 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 832 O HOH B 867 2.18 REMARK 500 OD1 ASN A 359 O HOH A 971 2.18 REMARK 500 O HOH B 772 O HOH B 980 2.19 REMARK 500 O3 PO4 A 602 O HOH A 835 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 14 56.05 -109.45 REMARK 500 LYS A 42 75.30 -104.46 REMARK 500 VAL A 95 98.44 -62.37 REMARK 500 PHE A 96 119.65 -164.47 REMARK 500 CYS A 141 40.05 -103.15 REMARK 500 GLU A 187 7.54 -68.37 REMARK 500 THR A 220 92.24 -69.90 REMARK 500 TYR A 231 -45.83 -132.10 REMARK 500 PHE A 269 64.24 -112.83 REMARK 500 TYR A 281 -54.31 -125.49 REMARK 500 GLU A 293 -61.77 -133.33 REMARK 500 ASP A 313 17.47 -143.28 REMARK 500 ASP A 357 -162.39 -125.06 REMARK 500 ASP A 416 75.58 -155.98 REMARK 500 ASP A 420 85.39 -160.17 REMARK 500 GLU A 487 20.95 -78.93 REMARK 500 TYR B 54 77.56 -117.47 REMARK 500 GLU B 187 4.41 -67.48 REMARK 500 PHE B 269 63.57 -108.21 REMARK 500 TYR B 281 -55.48 -126.12 REMARK 500 GLU B 293 -61.55 -132.14 REMARK 500 ASP B 313 23.93 -147.60 REMARK 500 ASP B 416 75.65 -159.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 950 DISTANCE = 6.20 ANGSTROMS REMARK 525 HOH A 967 DISTANCE = 5.67 ANGSTROMS REMARK 525 HOH A 969 DISTANCE = 6.16 ANGSTROMS REMARK 525 HOH A 973 DISTANCE = 7.70 ANGSTROMS REMARK 525 HOH A 974 DISTANCE = 6.38 ANGSTROMS REMARK 525 HOH B 959 DISTANCE = 5.66 ANGSTROMS REMARK 525 HOH B 984 DISTANCE = 5.06 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2QG A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2QG B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 603 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4O0Z RELATED DB: PDB REMARK 900 RELATED ID: 4O10 RELATED DB: PDB DBREF 4O12 A 1 491 UNP P43490 NAMPT_HUMAN 1 491 DBREF 4O12 B 1 491 UNP P43490 NAMPT_HUMAN 1 491 SEQADV 4O12 LEU A 492 UNP P43490 EXPRESSION TAG SEQADV 4O12 GLU A 493 UNP P43490 EXPRESSION TAG SEQADV 4O12 HIS A 494 UNP P43490 EXPRESSION TAG SEQADV 4O12 HIS A 495 UNP P43490 EXPRESSION TAG SEQADV 4O12 HIS A 496 UNP P43490 EXPRESSION TAG SEQADV 4O12 HIS A 497 UNP P43490 EXPRESSION TAG SEQADV 4O12 HIS A 498 UNP P43490 EXPRESSION TAG SEQADV 4O12 HIS A 499 UNP P43490 EXPRESSION TAG SEQADV 4O12 HIS A 500 UNP P43490 EXPRESSION TAG SEQADV 4O12 HIS A 501 UNP P43490 EXPRESSION TAG SEQADV 4O12 LEU B 492 UNP P43490 EXPRESSION TAG SEQADV 4O12 GLU B 493 UNP P43490 EXPRESSION TAG SEQADV 4O12 HIS B 494 UNP P43490 EXPRESSION TAG SEQADV 4O12 HIS B 495 UNP P43490 EXPRESSION TAG SEQADV 4O12 HIS B 496 UNP P43490 EXPRESSION TAG SEQADV 4O12 HIS B 497 UNP P43490 EXPRESSION TAG SEQADV 4O12 HIS B 498 UNP P43490 EXPRESSION TAG SEQADV 4O12 HIS B 499 UNP P43490 EXPRESSION TAG SEQADV 4O12 HIS B 500 UNP P43490 EXPRESSION TAG SEQADV 4O12 HIS B 501 UNP P43490 EXPRESSION TAG SEQRES 1 A 501 MET ASN PRO ALA ALA GLU ALA GLU PHE ASN ILE LEU LEU SEQRES 2 A 501 ALA THR ASP SER TYR LYS VAL THR HIS TYR LYS GLN TYR SEQRES 3 A 501 PRO PRO ASN THR SER LYS VAL TYR SER TYR PHE GLU CYS SEQRES 4 A 501 ARG GLU LYS LYS THR GLU ASN SER LYS LEU ARG LYS VAL SEQRES 5 A 501 LYS TYR GLU GLU THR VAL PHE TYR GLY LEU GLN TYR ILE SEQRES 6 A 501 LEU ASN LYS TYR LEU LYS GLY LYS VAL VAL THR LYS GLU SEQRES 7 A 501 LYS ILE GLN GLU ALA LYS ASP VAL TYR LYS GLU HIS PHE SEQRES 8 A 501 GLN ASP ASP VAL PHE ASN GLU LYS GLY TRP ASN TYR ILE SEQRES 9 A 501 LEU GLU LYS TYR ASP GLY HIS LEU PRO ILE GLU ILE LYS SEQRES 10 A 501 ALA VAL PRO GLU GLY PHE VAL ILE PRO ARG GLY ASN VAL SEQRES 11 A 501 LEU PHE THR VAL GLU ASN THR ASP PRO GLU CYS TYR TRP SEQRES 12 A 501 LEU THR ASN TRP ILE GLU THR ILE LEU VAL GLN SER TRP SEQRES 13 A 501 TYR PRO ILE THR VAL ALA THR ASN SER ARG GLU GLN LYS SEQRES 14 A 501 LYS ILE LEU ALA LYS TYR LEU LEU GLU THR SER GLY ASN SEQRES 15 A 501 LEU ASP GLY LEU GLU TYR LYS LEU HIS ASP PHE GLY TYR SEQRES 16 A 501 ARG GLY VAL SER SER GLN GLU THR ALA GLY ILE GLY ALA SEQRES 17 A 501 SER ALA HIS LEU VAL ASN PHE LYS GLY THR ASP THR VAL SEQRES 18 A 501 ALA GLY LEU ALA LEU ILE LYS LYS TYR TYR GLY THR LYS SEQRES 19 A 501 ASP PRO VAL PRO GLY TYR SER VAL PRO ALA ALA GLU HIS SEQRES 20 A 501 SER THR ILE THR ALA TRP GLY LYS ASP HIS GLU LYS ASP SEQRES 21 A 501 ALA PHE GLU HIS ILE VAL THR GLN PHE SER SER VAL PRO SEQRES 22 A 501 VAL SER VAL VAL SER ASP SER TYR ASP ILE TYR ASN ALA SEQRES 23 A 501 CYS GLU LYS ILE TRP GLY GLU ASP LEU ARG HIS LEU ILE SEQRES 24 A 501 VAL SER ARG SER THR GLN ALA PRO LEU ILE ILE ARG PRO SEQRES 25 A 501 ASP SER GLY ASN PRO LEU ASP THR VAL LEU LYS VAL LEU SEQRES 26 A 501 GLU ILE LEU GLY LYS LYS PHE PRO VAL THR GLU ASN SER SEQRES 27 A 501 LYS GLY TYR LYS LEU LEU PRO PRO TYR LEU ARG VAL ILE SEQRES 28 A 501 GLN GLY ASP GLY VAL ASP ILE ASN THR LEU GLN GLU ILE SEQRES 29 A 501 VAL GLU GLY MET LYS GLN LYS MET TRP SER ILE GLU ASN SEQRES 30 A 501 ILE ALA PHE GLY SER GLY GLY GLY LEU LEU GLN LYS LEU SEQRES 31 A 501 THR ARG ASP LEU LEU ASN CYS SER PHE LYS CYS SER TYR SEQRES 32 A 501 VAL VAL THR ASN GLY LEU GLY ILE ASN VAL PHE LYS ASP SEQRES 33 A 501 PRO VAL ALA ASP PRO ASN LYS ARG SER LYS LYS GLY ARG SEQRES 34 A 501 LEU SER LEU HIS ARG THR PRO ALA GLY ASN PHE VAL THR SEQRES 35 A 501 LEU GLU GLU GLY LYS GLY ASP LEU GLU GLU TYR GLY GLN SEQRES 36 A 501 ASP LEU LEU HIS THR VAL PHE LYS ASN GLY LYS VAL THR SEQRES 37 A 501 LYS SER TYR SER PHE ASP GLU ILE ARG LYS ASN ALA GLN SEQRES 38 A 501 LEU ASN ILE GLU LEU GLU ALA ALA HIS HIS LEU GLU HIS SEQRES 39 A 501 HIS HIS HIS HIS HIS HIS HIS SEQRES 1 B 501 MET ASN PRO ALA ALA GLU ALA GLU PHE ASN ILE LEU LEU SEQRES 2 B 501 ALA THR ASP SER TYR LYS VAL THR HIS TYR LYS GLN TYR SEQRES 3 B 501 PRO PRO ASN THR SER LYS VAL TYR SER TYR PHE GLU CYS SEQRES 4 B 501 ARG GLU LYS LYS THR GLU ASN SER LYS LEU ARG LYS VAL SEQRES 5 B 501 LYS TYR GLU GLU THR VAL PHE TYR GLY LEU GLN TYR ILE SEQRES 6 B 501 LEU ASN LYS TYR LEU LYS GLY LYS VAL VAL THR LYS GLU SEQRES 7 B 501 LYS ILE GLN GLU ALA LYS ASP VAL TYR LYS GLU HIS PHE SEQRES 8 B 501 GLN ASP ASP VAL PHE ASN GLU LYS GLY TRP ASN TYR ILE SEQRES 9 B 501 LEU GLU LYS TYR ASP GLY HIS LEU PRO ILE GLU ILE LYS SEQRES 10 B 501 ALA VAL PRO GLU GLY PHE VAL ILE PRO ARG GLY ASN VAL SEQRES 11 B 501 LEU PHE THR VAL GLU ASN THR ASP PRO GLU CYS TYR TRP SEQRES 12 B 501 LEU THR ASN TRP ILE GLU THR ILE LEU VAL GLN SER TRP SEQRES 13 B 501 TYR PRO ILE THR VAL ALA THR ASN SER ARG GLU GLN LYS SEQRES 14 B 501 LYS ILE LEU ALA LYS TYR LEU LEU GLU THR SER GLY ASN SEQRES 15 B 501 LEU ASP GLY LEU GLU TYR LYS LEU HIS ASP PHE GLY TYR SEQRES 16 B 501 ARG GLY VAL SER SER GLN GLU THR ALA GLY ILE GLY ALA SEQRES 17 B 501 SER ALA HIS LEU VAL ASN PHE LYS GLY THR ASP THR VAL SEQRES 18 B 501 ALA GLY LEU ALA LEU ILE LYS LYS TYR TYR GLY THR LYS SEQRES 19 B 501 ASP PRO VAL PRO GLY TYR SER VAL PRO ALA ALA GLU HIS SEQRES 20 B 501 SER THR ILE THR ALA TRP GLY LYS ASP HIS GLU LYS ASP SEQRES 21 B 501 ALA PHE GLU HIS ILE VAL THR GLN PHE SER SER VAL PRO SEQRES 22 B 501 VAL SER VAL VAL SER ASP SER TYR ASP ILE TYR ASN ALA SEQRES 23 B 501 CYS GLU LYS ILE TRP GLY GLU ASP LEU ARG HIS LEU ILE SEQRES 24 B 501 VAL SER ARG SER THR GLN ALA PRO LEU ILE ILE ARG PRO SEQRES 25 B 501 ASP SER GLY ASN PRO LEU ASP THR VAL LEU LYS VAL LEU SEQRES 26 B 501 GLU ILE LEU GLY LYS LYS PHE PRO VAL THR GLU ASN SER SEQRES 27 B 501 LYS GLY TYR LYS LEU LEU PRO PRO TYR LEU ARG VAL ILE SEQRES 28 B 501 GLN GLY ASP GLY VAL ASP ILE ASN THR LEU GLN GLU ILE SEQRES 29 B 501 VAL GLU GLY MET LYS GLN LYS MET TRP SER ILE GLU ASN SEQRES 30 B 501 ILE ALA PHE GLY SER GLY GLY GLY LEU LEU GLN LYS LEU SEQRES 31 B 501 THR ARG ASP LEU LEU ASN CYS SER PHE LYS CYS SER TYR SEQRES 32 B 501 VAL VAL THR ASN GLY LEU GLY ILE ASN VAL PHE LYS ASP SEQRES 33 B 501 PRO VAL ALA ASP PRO ASN LYS ARG SER LYS LYS GLY ARG SEQRES 34 B 501 LEU SER LEU HIS ARG THR PRO ALA GLY ASN PHE VAL THR SEQRES 35 B 501 LEU GLU GLU GLY LYS GLY ASP LEU GLU GLU TYR GLY GLN SEQRES 36 B 501 ASP LEU LEU HIS THR VAL PHE LYS ASN GLY LYS VAL THR SEQRES 37 B 501 LYS SER TYR SER PHE ASP GLU ILE ARG LYS ASN ALA GLN SEQRES 38 B 501 LEU ASN ILE GLU LEU GLU ALA ALA HIS HIS LEU GLU HIS SEQRES 39 B 501 HIS HIS HIS HIS HIS HIS HIS HET 2QG A 601 52 HET PO4 A 602 5 HET 2QG B 601 52 HET PO4 B 602 5 HET PO4 B 603 5 HETNAM 2QG 2-[6-(4-CHLOROPHENOXY)HEXYL]-1-CYANO-3-PYRIDIN-4- HETNAM 2 2QG YLGUANIDINE HETNAM PO4 PHOSPHATE ION FORMUL 3 2QG 2(C19 H22 CL N5 O) FORMUL 4 PO4 3(O4 P 3-) FORMUL 8 HOH *574(H2 O) HELIX 1 1 ASN A 10 ALA A 14 5 5 HELIX 2 2 ASP A 16 GLN A 25 5 10 HELIX 3 3 GLY A 61 TYR A 69 1 9 HELIX 4 4 THR A 76 GLN A 92 1 17 HELIX 5 5 ASN A 97 ASP A 109 1 13 HELIX 6 6 ASP A 138 TYR A 142 5 5 HELIX 7 7 TRP A 143 ILE A 148 1 6 HELIX 8 8 ILE A 148 GLN A 154 1 7 HELIX 9 9 SER A 155 GLY A 181 1 27 HELIX 10 10 GLY A 185 TYR A 188 5 4 HELIX 11 11 SER A 200 LEU A 212 1 13 HELIX 12 12 VAL A 221 TYR A 231 1 11 HELIX 13 13 GLU A 246 ALA A 252 1 7 HELIX 14 14 HIS A 257 PHE A 269 1 13 HELIX 15 15 ASP A 282 LYS A 289 1 8 HELIX 16 16 LEU A 295 ILE A 299 5 5 HELIX 17 17 ASN A 316 PHE A 332 1 17 HELIX 18 18 ASP A 357 LYS A 371 1 15 HELIX 19 19 SER A 374 GLU A 376 5 3 HELIX 20 20 GLY A 383 GLN A 388 1 6 HELIX 21 21 ASP A 420 ARG A 424 5 5 HELIX 22 22 GLY A 446 GLU A 451 5 6 HELIX 23 23 SER A 472 ALA A 480 1 9 HELIX 24 24 LEU A 482 GLU A 487 1 6 HELIX 25 25 ASN B 10 ALA B 14 5 5 HELIX 26 26 ASP B 16 GLN B 25 5 10 HELIX 27 27 GLY B 61 LEU B 70 1 10 HELIX 28 28 THR B 76 GLN B 92 1 17 HELIX 29 29 ASN B 97 ASP B 109 1 13 HELIX 30 30 ASP B 138 TYR B 142 5 5 HELIX 31 31 TRP B 143 ILE B 148 1 6 HELIX 32 32 ILE B 148 GLN B 154 1 7 HELIX 33 33 SER B 155 GLY B 181 1 27 HELIX 34 34 GLY B 185 TYR B 188 5 4 HELIX 35 35 SER B 200 LEU B 212 1 13 HELIX 36 36 VAL B 221 TYR B 231 1 11 HELIX 37 37 GLU B 246 ALA B 252 1 7 HELIX 38 38 TRP B 253 ASP B 256 5 4 HELIX 39 39 HIS B 257 PHE B 269 1 13 HELIX 40 40 ASP B 282 LYS B 289 1 8 HELIX 41 41 LEU B 295 VAL B 300 1 6 HELIX 42 42 ASN B 316 PHE B 332 1 17 HELIX 43 43 ASP B 357 LYS B 371 1 15 HELIX 44 44 SER B 374 GLU B 376 5 3 HELIX 45 45 GLY B 383 GLN B 388 1 6 HELIX 46 46 ASP B 420 ARG B 424 5 5 HELIX 47 47 GLY B 446 GLU B 451 5 6 HELIX 48 48 SER B 472 ALA B 480 1 9 HELIX 49 49 LEU B 482 GLU B 487 1 6 SHEET 1 A 7 LEU A 409 ASN A 412 0 SHEET 2 A 7 CYS A 397 THR A 406 -1 N THR A 406 O LEU A 409 SHEET 3 A 7 THR A 30 CYS A 39 -1 N GLU A 38 O SER A 398 SHEET 4 A 7 VAL A 130 ASN A 136 -1 O VAL A 134 N SER A 35 SHEET 5 A 7 ILE A 114 ALA A 118 -1 N GLU A 115 O GLU A 135 SHEET 6 A 7 HIS A 459 LYS A 463 -1 O HIS A 459 N ALA A 118 SHEET 7 A 7 LYS A 466 VAL A 467 -1 O LYS A 466 N LYS A 463 SHEET 1 B 2 GLU A 56 VAL A 58 0 SHEET 2 B 2 VAL A 124 PRO A 126 -1 O ILE A 125 N THR A 57 SHEET 1 C 5 LEU A 190 ASP A 192 0 SHEET 2 C 5 ILE A 378 SER A 382 1 O PHE A 380 N HIS A 191 SHEET 3 C 5 LEU A 348 GLN A 352 1 N GLN A 352 O GLY A 381 SHEET 4 C 5 LEU A 308 ARG A 311 1 N LEU A 308 O ARG A 349 SHEET 5 C 5 VAL A 274 VAL A 277 1 N VAL A 274 O ILE A 309 SHEET 1 D 2 THR A 335 GLU A 336 0 SHEET 2 D 2 LYS A 342 LEU A 343 -1 O LEU A 343 N THR A 335 SHEET 1 E 2 SER A 431 ARG A 434 0 SHEET 2 E 2 PHE A 440 LEU A 443 -1 O VAL A 441 N HIS A 433 SHEET 1 F 7 LEU B 409 ASN B 412 0 SHEET 2 F 7 CYS B 397 THR B 406 -1 N VAL B 404 O ILE B 411 SHEET 3 F 7 THR B 30 CYS B 39 -1 N GLU B 38 O SER B 398 SHEET 4 F 7 VAL B 130 ASN B 136 -1 O VAL B 134 N SER B 35 SHEET 5 F 7 ILE B 114 ALA B 118 -1 N GLU B 115 O GLU B 135 SHEET 6 F 7 HIS B 459 LYS B 463 -1 O HIS B 459 N ALA B 118 SHEET 7 F 7 LYS B 466 VAL B 467 -1 O LYS B 466 N LYS B 463 SHEET 1 G 2 GLU B 56 VAL B 58 0 SHEET 2 G 2 VAL B 124 PRO B 126 -1 O ILE B 125 N THR B 57 SHEET 1 H 5 LEU B 190 ASP B 192 0 SHEET 2 H 5 ILE B 378 SER B 382 1 O PHE B 380 N HIS B 191 SHEET 3 H 5 LEU B 348 GLN B 352 1 N GLN B 352 O GLY B 381 SHEET 4 H 5 LEU B 308 ARG B 311 1 N ILE B 310 O ILE B 351 SHEET 5 H 5 VAL B 274 VAL B 277 1 N VAL B 274 O ILE B 309 SHEET 1 I 2 THR B 335 GLU B 336 0 SHEET 2 I 2 LYS B 342 LEU B 343 -1 O LEU B 343 N THR B 335 SHEET 1 J 2 SER B 431 ARG B 434 0 SHEET 2 J 2 PHE B 440 LEU B 443 -1 O LEU B 443 N SER B 431 SITE 1 AC1 19 TYR A 188 LYS A 189 HIS A 191 PHE A 193 SITE 2 AC1 19 ARG A 196 ASP A 219 VAL A 242 ALA A 244 SITE 3 AC1 19 SER A 275 ILE A 309 ARG A 311 ARG A 349 SITE 4 AC1 19 VAL A 350 ILE A 351 GLU A 376 ALA A 379 SITE 5 AC1 19 HOH A 770 ASP B 16 TYR B 18 SITE 1 AC2 7 ARG A 40 ARG A 392 SER A 398 LYS A 400 SITE 2 AC2 7 HOH A 715 HOH A 835 HOH A 920 SITE 1 AC3 21 TYR A 18 TYR B 188 LYS B 189 HIS B 191 SITE 2 AC3 21 PHE B 193 ARG B 196 ASP B 219 VAL B 242 SITE 3 AC3 21 ALA B 244 SER B 275 ILE B 309 ARG B 311 SITE 4 AC3 21 ILE B 351 GLU B 376 ILE B 378 ALA B 379 SITE 5 AC3 21 PO4 B 603 HOH B 745 HOH B 787 HOH B 862 SITE 6 AC3 21 HOH B 938 SITE 1 AC4 10 ARG B 40 ARG B 392 SER B 398 LYS B 400 SITE 2 AC4 10 HOH B 730 HOH B 773 HOH B 818 HOH B 848 SITE 3 AC4 10 HOH B 910 HOH B 974 SITE 1 AC5 10 TYR A 18 ARG B 196 ALA B 245 GLU B 246 SITE 2 AC5 10 HIS B 247 ARG B 311 ASP B 313 2QG B 601 SITE 3 AC5 10 HOH B 714 HOH B 824 CRYST1 60.570 106.505 83.174 90.00 96.64 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016510 0.000000 0.001920 0.00000 SCALE2 0.000000 0.009389 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012104 0.00000