PDB Short entry for 4ONF HEADER IMMUNE SYSTEM 28-JAN-14 4ONF TITLE FAB FRAGMENT OF 3D6 IN COMPLEX WITH AMYLOID BETA 1-7 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3D6 FAB ANTIBODY HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: 3D6 FAB ANTIBODY LIGHT CHAIN; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: AMYLOID BETA A4 PROTEIN; COMPND 11 CHAIN: P; COMPND 12 FRAGMENT: UNP RESIDUES 672-678; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: CHINESE HAMSTER; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 10 ORGANISM_COMMON: MOUSE; SOURCE 11 ORGANISM_TAXID: 10090; SOURCE 12 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 13 EXPRESSION_SYSTEM_COMMON: CHINESE HAMSTER; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 18 ORGANISM_COMMON: HUMAN; SOURCE 19 ORGANISM_TAXID: 9606 KEYWDS ANTIBODY, AMYLOID BETA PEPTIDE, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR H.FEINBERG,J.W.SALDANHA,L.DIEP,A.GOEL,A.WIDOM,G.M.VELDMAN,W.I.WEIS, AUTHOR 2 D.SCHENK,G.S.BASI REVDAT 4 20-SEP-23 4ONF 1 REMARK REVDAT 3 22-NOV-17 4ONF 1 REMARK REVDAT 2 30-JUL-14 4ONF 1 JRNL REVDAT 1 11-JUN-14 4ONF 0 JRNL AUTH H.FEINBERG,J.W.SALDANHA,L.DIEP,A.GOEL,A.WIDOM,G.M.VELDMAN, JRNL AUTH 2 W.I.WEIS,D.SCHENK,G.S.BASI JRNL TITL CRYSTAL STRUCTURE REVEALS CONSERVATION OF AMYLOID-BETA JRNL TITL 2 CONFORMATION RECOGNIZED BY 3D6 FOLLOWING HUMANIZATION TO JRNL TITL 3 BAPINEUZUMAB. JRNL REF ALZHEIMERS RES THER V. 6 31 2014 JRNL REFN JRNL PMID 25024748 JRNL DOI 10.1186/ALZRT261 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.10 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 32814 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 1664 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.1026 - 4.5759 1.00 2650 167 0.1451 0.1663 REMARK 3 2 4.5759 - 3.6332 1.00 2624 117 0.1338 0.1732 REMARK 3 3 3.6332 - 3.1743 1.00 2596 152 0.1602 0.2103 REMARK 3 4 3.1743 - 2.8842 1.00 2581 152 0.1727 0.2119 REMARK 3 5 2.8842 - 2.6776 1.00 2598 120 0.1729 0.2197 REMARK 3 6 2.6776 - 2.5198 1.00 2587 153 0.1685 0.2137 REMARK 3 7 2.5198 - 2.3936 1.00 2577 137 0.1654 0.2252 REMARK 3 8 2.3936 - 2.2894 1.00 2600 132 0.1641 0.2255 REMARK 3 9 2.2894 - 2.2013 1.00 2575 142 0.1683 0.2533 REMARK 3 10 2.2013 - 2.1253 1.00 2572 138 0.1659 0.2188 REMARK 3 11 2.1253 - 2.0589 1.00 2582 121 0.1655 0.2281 REMARK 3 12 2.0589 - 2.0001 1.00 2608 133 0.1700 0.2438 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.700 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.99 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3476 REMARK 3 ANGLE : 1.095 4728 REMARK 3 CHIRALITY : 0.085 532 REMARK 3 PLANARITY : 0.004 597 REMARK 3 DIHEDRAL : 12.222 1254 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 1 THROUGH 119 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.3658 5.4162 37.6387 REMARK 3 T TENSOR REMARK 3 T11: 0.1319 T22: 0.1063 REMARK 3 T33: 0.1002 T12: 0.0028 REMARK 3 T13: 0.0005 T23: -0.0038 REMARK 3 L TENSOR REMARK 3 L11: 3.5534 L22: 2.3795 REMARK 3 L33: 1.7918 L12: -1.6109 REMARK 3 L13: 0.0792 L23: -0.3023 REMARK 3 S TENSOR REMARK 3 S11: -0.0463 S12: -0.0199 S13: 0.0542 REMARK 3 S21: 0.0411 S22: -0.0235 S23: -0.0205 REMARK 3 S31: -0.0674 S32: -0.0800 S33: 0.0653 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 120 THROUGH 219 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.3237 5.5845 18.9862 REMARK 3 T TENSOR REMARK 3 T11: 0.2215 T22: 0.2831 REMARK 3 T33: 0.1459 T12: -0.0292 REMARK 3 T13: 0.0030 T23: 0.0109 REMARK 3 L TENSOR REMARK 3 L11: 2.1055 L22: 1.7993 REMARK 3 L33: 5.7052 L12: 0.6943 REMARK 3 L13: -0.8834 L23: -1.1882 REMARK 3 S TENSOR REMARK 3 S11: -0.0490 S12: 0.2255 S13: 0.1432 REMARK 3 S21: -0.1637 S22: 0.0068 S23: -0.0628 REMARK 3 S31: -0.4846 S32: 0.2016 S33: 0.0223 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 1 THROUGH 111 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.2984 6.9896 18.6093 REMARK 3 T TENSOR REMARK 3 T11: 0.1017 T22: 0.1147 REMARK 3 T33: 0.1214 T12: 0.0031 REMARK 3 T13: -0.0105 T23: -0.0202 REMARK 3 L TENSOR REMARK 3 L11: 2.4385 L22: 1.9701 REMARK 3 L33: 3.2919 L12: -0.0677 REMARK 3 L13: -0.7569 L23: -0.9220 REMARK 3 S TENSOR REMARK 3 S11: 0.0044 S12: 0.0400 S13: -0.0937 REMARK 3 S21: -0.1544 S22: -0.0407 S23: 0.0054 REMARK 3 S31: 0.1337 S32: -0.0098 S33: 0.0344 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 112 THROUGH 218 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.8142 -4.2350 6.2345 REMARK 3 T TENSOR REMARK 3 T11: 0.1586 T22: 0.2048 REMARK 3 T33: 0.1475 T12: -0.0101 REMARK 3 T13: 0.0296 T23: -0.0001 REMARK 3 L TENSOR REMARK 3 L11: 3.6144 L22: 2.4680 REMARK 3 L33: 3.6085 L12: -1.7781 REMARK 3 L13: 2.0445 L23: -1.8724 REMARK 3 S TENSOR REMARK 3 S11: 0.0142 S12: -0.0424 S13: -0.1809 REMARK 3 S21: -0.0018 S22: 0.0313 S23: -0.0029 REMARK 3 S31: 0.0958 S32: 0.0845 S33: -0.0509 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'P' AND (RESID 1 THROUGH 6 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.0866 5.9115 36.9598 REMARK 3 T TENSOR REMARK 3 T11: 0.1759 T22: 0.2360 REMARK 3 T33: 0.1682 T12: 0.0371 REMARK 3 T13: 0.0151 T23: 0.0269 REMARK 3 L TENSOR REMARK 3 L11: 8.6001 L22: 2.5868 REMARK 3 L33: 9.2122 L12: -3.4095 REMARK 3 L13: -0.3725 L23: 3.5083 REMARK 3 S TENSOR REMARK 3 S11: -0.3812 S12: -0.3764 S13: 0.0610 REMARK 3 S21: 0.2566 S22: 0.2660 S23: 0.5604 REMARK 3 S31: -0.0446 S32: -1.0457 S33: 0.1314 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4ONF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1000084712. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-MAR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.25 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32824 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 59.376 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : 0.06500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.23000 REMARK 200 R SYM FOR SHELL (I) : 0.23000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: COMO REMARK 200 STARTING MODEL: PDB ENTRY 3IFL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG400, 0.1 M TRIS, PH 9.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 63.40500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.72000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 63.40500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 34.72000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY H 133 REMARK 465 SER H 134 REMARK 465 ALA H 135 REMARK 465 ALA H 136 REMARK 465 GLN H 137 REMARK 465 THR H 138 REMARK 465 ASN H 139 REMARK 465 ASP H 220 REMARK 465 CYS H 221 REMARK 465 GLY H 222 REMARK 465 CYS L 219 REMARK 465 ASP P 7 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS P 6 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH L 304 O HOH L 497 2.10 REMARK 500 O HOH L 352 O HOH L 472 2.13 REMARK 500 O HOH L 303 O HOH L 465 2.17 REMARK 500 O HOH L 395 O HOH L 497 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL L 56 -49.94 73.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN L 161 ASN L 162 136.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN P OF AMYLOID BETA A4 REMARK 800 PROTEIN REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4ONG RELATED DB: PDB DBREF 4ONF P 1 7 UNP P05067 A4_HUMAN 672 678 DBREF 4ONF H 1 222 PDB 4ONF 4ONF 1 222 DBREF 4ONF L 1 219 PDB 4ONF 4ONF 1 219 SEQRES 1 H 222 GLU VAL LYS LEU VAL GLU SER GLY GLY GLY LEU VAL LYS SEQRES 2 H 222 PRO GLY ALA SER LEU LYS LEU SER CYS ALA ALA SER GLY SEQRES 3 H 222 PHE THR PHE SER ASN TYR GLY MET SER TRP VAL ARG GLN SEQRES 4 H 222 ASN SER ASP LYS ARG LEU GLU TRP VAL ALA SER ILE ARG SEQRES 5 H 222 SER GLY GLY GLY ARG THR TYR TYR SER ASP ASN VAL LYS SEQRES 6 H 222 GLY ARG PHE THR ILE SER ARG GLU ASN ALA LYS ASN THR SEQRES 7 H 222 LEU TYR LEU GLN MET SER SER LEU LYS SER GLU ASP THR SEQRES 8 H 222 ALA LEU TYR TYR CYS VAL ARG TYR ASP HIS TYR SER GLY SEQRES 9 H 222 SER SER ASP TYR TRP GLY GLN GLY THR THR VAL THR VAL SEQRES 10 H 222 SER SER ALA LYS THR THR PRO PRO SER VAL TYR PRO LEU SEQRES 11 H 222 ALA PRO GLY SER ALA ALA GLN THR ASN SER MET VAL THR SEQRES 12 H 222 LEU GLY CYS LEU VAL LYS GLY TYR PHE PRO GLU PRO VAL SEQRES 13 H 222 THR VAL THR TRP ASN SER GLY SER LEU SER SER GLY VAL SEQRES 14 H 222 HIS THR PHE PRO ALA VAL LEU GLN SER ASP LEU TYR THR SEQRES 15 H 222 LEU SER SER SER VAL THR VAL PRO SER SER THR TRP PRO SEQRES 16 H 222 SER GLU THR VAL THR CYS ASN VAL ALA HIS PRO ALA SER SEQRES 17 H 222 SER THR LYS VAL ASP LYS LYS ILE VAL PRO ARG ASP CYS SEQRES 18 H 222 GLY SEQRES 1 L 219 TYR VAL VAL MET THR GLN THR PRO LEU THR LEU SER VAL SEQRES 2 L 219 THR ILE GLY GLN PRO ALA SER ILE SER CYS LYS SER SER SEQRES 3 L 219 GLN SER LEU LEU ASP SER ASP GLY LYS THR TYR LEU ASN SEQRES 4 L 219 TRP LEU LEU GLN ARG PRO GLY GLN SER PRO LYS ARG LEU SEQRES 5 L 219 ILE TYR LEU VAL SER LYS LEU ASP SER GLY VAL PRO ASP SEQRES 6 L 219 ARG PHE THR GLY SER GLY SER GLY THR ASP PHE THR LEU SEQRES 7 L 219 LYS ILE SER ARG ILE GLU ALA GLU ASP LEU GLY LEU TYR SEQRES 8 L 219 TYR CYS TRP GLN GLY THR HIS PHE PRO ARG THR PHE GLY SEQRES 9 L 219 GLY GLY THR LYS LEU GLU ILE LYS ARG ALA ASP ALA ALA SEQRES 10 L 219 PRO THR VAL SER ILE PHE PRO PRO SER SER GLU GLN LEU SEQRES 11 L 219 THR SER GLY GLY ALA SER VAL VAL CYS PHE LEU ASN ASN SEQRES 12 L 219 PHE TYR PRO LYS ASP ILE ASN VAL LYS TRP LYS ILE ASP SEQRES 13 L 219 GLY SER GLU ARG GLN ASN GLY VAL LEU ASN SER TRP THR SEQRES 14 L 219 ASP GLN ASP SER LYS ASP SER THR TYR SER MET SER SER SEQRES 15 L 219 THR LEU THR LEU THR LYS ASP GLU TYR GLU ARG HIS ASN SEQRES 16 L 219 SER TYR THR CYS GLU ALA THR HIS LYS THR SER THR SER SEQRES 17 L 219 PRO ILE VAL LYS SER PHE ASN ARG ASN GLU CYS SEQRES 1 P 7 ASP ALA GLU PHE ARG HIS ASP FORMUL 4 HOH *390(H2 O) HELIX 1 1 THR H 28 TYR H 32 5 5 HELIX 2 2 ASN H 74 LYS H 76 5 3 HELIX 3 3 LYS H 87 THR H 91 5 5 HELIX 4 4 SER H 162 SER H 164 5 3 HELIX 5 5 PRO H 206 SER H 209 5 4 HELIX 6 6 GLU L 84 LEU L 88 5 5 HELIX 7 7 SER L 126 THR L 131 1 6 HELIX 8 8 LYS L 188 ARG L 193 1 6 HELIX 9 9 ASP P 1 ARG P 5 5 5 SHEET 1 A 4 LYS H 3 SER H 7 0 SHEET 2 A 4 LEU H 18 SER H 25 -1 O SER H 21 N SER H 7 SHEET 3 A 4 THR H 78 MET H 83 -1 O MET H 83 N LEU H 18 SHEET 4 A 4 PHE H 68 GLU H 73 -1 N THR H 69 O GLN H 82 SHEET 1 B 6 LEU H 11 VAL H 12 0 SHEET 2 B 6 THR H 113 VAL H 117 1 O THR H 116 N VAL H 12 SHEET 3 B 6 ALA H 92 ASP H 100 -1 N ALA H 92 O VAL H 115 SHEET 4 B 6 GLY H 33 GLN H 39 -1 N VAL H 37 O TYR H 95 SHEET 5 B 6 LEU H 45 ILE H 51 -1 O GLU H 46 N ARG H 38 SHEET 6 B 6 THR H 58 TYR H 60 -1 O TYR H 59 N SER H 50 SHEET 1 C 4 LEU H 11 VAL H 12 0 SHEET 2 C 4 THR H 113 VAL H 117 1 O THR H 116 N VAL H 12 SHEET 3 C 4 ALA H 92 ASP H 100 -1 N ALA H 92 O VAL H 115 SHEET 4 C 4 SER H 105 TRP H 109 -1 O TYR H 108 N ARG H 98 SHEET 1 D 4 SER H 126 LEU H 130 0 SHEET 2 D 4 MET H 141 TYR H 151 -1 O LEU H 147 N TYR H 128 SHEET 3 D 4 LEU H 180 PRO H 190 -1 O TYR H 181 N TYR H 151 SHEET 4 D 4 VAL H 169 THR H 171 -1 N HIS H 170 O SER H 186 SHEET 1 E 4 SER H 126 LEU H 130 0 SHEET 2 E 4 MET H 141 TYR H 151 -1 O LEU H 147 N TYR H 128 SHEET 3 E 4 LEU H 180 PRO H 190 -1 O TYR H 181 N TYR H 151 SHEET 4 E 4 VAL H 175 GLN H 177 -1 N GLN H 177 O LEU H 180 SHEET 1 F 3 THR H 157 TRP H 160 0 SHEET 2 F 3 THR H 200 HIS H 205 -1 O ASN H 202 N THR H 159 SHEET 3 F 3 THR H 210 LYS H 215 -1 O VAL H 212 N VAL H 203 SHEET 1 G 4 MET L 4 THR L 7 0 SHEET 2 G 4 ALA L 19 SER L 25 -1 O LYS L 24 N THR L 5 SHEET 3 G 4 ASP L 75 ILE L 80 -1 O ILE L 80 N ALA L 19 SHEET 4 G 4 PHE L 67 SER L 72 -1 N THR L 68 O LYS L 79 SHEET 1 H 6 THR L 10 THR L 14 0 SHEET 2 H 6 THR L 107 LYS L 112 1 O LYS L 112 N VAL L 13 SHEET 3 H 6 GLY L 89 GLN L 95 -1 N TYR L 91 O THR L 107 SHEET 4 H 6 LEU L 38 GLN L 43 -1 N GLN L 43 O LEU L 90 SHEET 5 H 6 PRO L 49 TYR L 54 -1 O LEU L 52 N TRP L 40 SHEET 6 H 6 LYS L 58 LEU L 59 -1 O LYS L 58 N TYR L 54 SHEET 1 I 4 THR L 10 THR L 14 0 SHEET 2 I 4 THR L 107 LYS L 112 1 O LYS L 112 N VAL L 13 SHEET 3 I 4 GLY L 89 GLN L 95 -1 N TYR L 91 O THR L 107 SHEET 4 I 4 THR L 102 PHE L 103 -1 O THR L 102 N GLN L 95 SHEET 1 J 4 THR L 119 PHE L 123 0 SHEET 2 J 4 GLY L 134 PHE L 144 -1 O PHE L 140 N SER L 121 SHEET 3 J 4 TYR L 178 THR L 187 -1 O LEU L 184 N VAL L 137 SHEET 4 J 4 VAL L 164 TRP L 168 -1 N LEU L 165 O THR L 183 SHEET 1 K 4 SER L 158 ARG L 160 0 SHEET 2 K 4 ASN L 150 ILE L 155 -1 N ILE L 155 O SER L 158 SHEET 3 K 4 SER L 196 THR L 202 -1 O THR L 202 N ASN L 150 SHEET 4 K 4 ILE L 210 ASN L 215 -1 O LYS L 212 N CYS L 199 SSBOND 1 CYS H 22 CYS H 96 1555 1555 2.05 SSBOND 2 CYS H 146 CYS H 201 1555 1555 2.04 SSBOND 3 CYS L 23 CYS L 93 1555 1555 2.08 SSBOND 4 CYS L 139 CYS L 199 1555 1555 2.04 CISPEP 1 PHE H 152 PRO H 153 0 -3.40 CISPEP 2 GLU H 154 PRO H 155 0 0.64 CISPEP 3 TRP H 194 PRO H 195 0 10.18 CISPEP 4 THR L 7 PRO L 8 0 1.28 CISPEP 5 PHE L 99 PRO L 100 0 1.76 CISPEP 6 TYR L 145 PRO L 146 0 2.32 SITE 1 AC1 23 GLY H 33 MET H 34 TRP H 47 SER H 50 SITE 2 AC1 23 ILE H 51 ARG H 52 TYR H 59 TYR H 99 SITE 3 AC1 23 SER H 105 SER H 106 HOH H 482 ASP L 31 SITE 4 AC1 23 TYR L 37 TRP L 94 GLY L 96 THR L 97 SITE 5 AC1 23 ARG L 101 HOH P 101 HOH P 102 HOH P 103 SITE 6 AC1 23 HOH P 104 HOH P 106 HOH P 107 CRYST1 126.810 69.440 61.730 90.00 115.43 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007886 0.000000 0.003749 0.00000 SCALE2 0.000000 0.014402 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017939 0.00000