PDB Short entry for 4OXC HEADER LIGASE 03-FEB-14 4OXC TITLE CRYSTAL STRUCTURE OF XIAP BIR1 DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE XIAP; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: BIR1 DOMAIN (UNP RESIDUES 10-99); COMPND 5 SYNONYM: BACULOVIRAL IAP REPEAT-CONTAINING PROTEIN 4, IAP-LIKE COMPND 6 PROTEIN, HILP, INHIBITOR OF APOPTOSIS PROTEIN 3, HIAP3, X-LINKED COMPND 7 INHIBITOR OF APOPTOSIS PROTEIN, X-LINKED IAP; COMPND 8 EC: 6.3.2.-; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: API3,BIRC4,IAP3,XIAP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS XIAP, BIR, ZN FINGER EXPDTA X-RAY DIFFRACTION AUTHOR M.MILANI,F.COSSU,E.MASTRANGELO REVDAT 2 01-APR-15 4OXC 1 JRNL REVDAT 1 11-FEB-15 4OXC 0 JRNL AUTH F.COSSU,M.MILANI,S.GRASSI,F.MALVEZZI,A.CORTI,M.BOLOGNESI, JRNL AUTH 2 E.MASTRANGELO JRNL TITL NF023 BINDING TO XIAP-BIR1: SEARCHING DRUGS FOR REGULATION JRNL TITL 2 OF THE NF-KAPPA B PATHWAY. JRNL REF PROTEINS V. 83 612 2015 JRNL REFN ESSN 1097-0134 JRNL PMID 25619915 JRNL DOI 10.1002/PROT.24766 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.19 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 7683 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 371 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.98 REMARK 3 REFLECTION IN BIN (WORKING SET) : 556 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.64 REMARK 3 BIN R VALUE (WORKING SET) : 0.2410 REMARK 3 BIN FREE R VALUE SET COUNT : 24 REMARK 3 BIN FREE R VALUE : 0.5830 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2450 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 48 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.92000 REMARK 3 B22 (A**2) : -3.26000 REMARK 3 B33 (A**2) : 3.83000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 2.74000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.423 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2518 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2248 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3400 ; 1.142 ; 1.913 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5130 ; 3.699 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 306 ; 5.657 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 134 ;32.082 ;21.642 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 364 ;16.197 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;16.993 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 342 ; 0.068 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2942 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 710 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4OXC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-FEB-14. REMARK 100 THE DEPOSITION ID IS D_1000200148. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8085 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 72.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.12100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.06 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.61500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, SODIUM ACETATE, PH 8.5, REMARK 280 LIQUID DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 36.19500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 SER A -1 REMARK 465 SER A 0 REMARK 465 GLY A 1 REMARK 465 LEU A 2 REMARK 465 VAL A 3 REMARK 465 PRO A 4 REMARK 465 GLN A 5 REMARK 465 GLY A 6 REMARK 465 SER A 7 REMARK 465 HIS A 8 REMARK 465 MET A 9 REMARK 465 LYS A 10 REMARK 465 THR A 11 REMARK 465 CYS A 12 REMARK 465 VAL A 13 REMARK 465 PRO A 14 REMARK 465 ALA A 15 REMARK 465 ASP A 16 REMARK 465 ILE A 17 REMARK 465 ASN A 18 REMARK 465 LYS A 19 REMARK 465 GLU A 20 REMARK 465 GLU A 21 REMARK 465 MET B -11 REMARK 465 GLY B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 SER B -1 REMARK 465 SER B 0 REMARK 465 GLY B 1 REMARK 465 LEU B 2 REMARK 465 VAL B 3 REMARK 465 PRO B 4 REMARK 465 GLN B 5 REMARK 465 GLY B 6 REMARK 465 SER B 7 REMARK 465 HIS B 8 REMARK 465 MET B 9 REMARK 465 LYS B 10 REMARK 465 THR B 11 REMARK 465 CYS B 12 REMARK 465 VAL B 13 REMARK 465 PRO B 14 REMARK 465 ALA B 15 REMARK 465 ASP B 16 REMARK 465 ILE B 17 REMARK 465 ASN B 18 REMARK 465 LYS B 19 REMARK 465 GLU B 20 REMARK 465 GLU B 21 REMARK 465 GLU B 99 REMARK 465 MET C -11 REMARK 465 GLY C -10 REMARK 465 SER C -9 REMARK 465 SER C -8 REMARK 465 HIS C -7 REMARK 465 HIS C -6 REMARK 465 HIS C -5 REMARK 465 HIS C -4 REMARK 465 HIS C -3 REMARK 465 HIS C -2 REMARK 465 SER C -1 REMARK 465 SER C 0 REMARK 465 GLY C 1 REMARK 465 LEU C 2 REMARK 465 VAL C 3 REMARK 465 PRO C 4 REMARK 465 GLN C 5 REMARK 465 GLY C 6 REMARK 465 SER C 7 REMARK 465 HIS C 8 REMARK 465 MET C 9 REMARK 465 LYS C 10 REMARK 465 THR C 11 REMARK 465 CYS C 12 REMARK 465 VAL C 13 REMARK 465 PRO C 14 REMARK 465 ALA C 15 REMARK 465 ASP C 16 REMARK 465 ILE C 17 REMARK 465 ASN C 18 REMARK 465 LYS C 19 REMARK 465 GLU C 20 REMARK 465 GLU C 21 REMARK 465 MET D -11 REMARK 465 GLY D -10 REMARK 465 SER D -9 REMARK 465 SER D -8 REMARK 465 HIS D -7 REMARK 465 HIS D -6 REMARK 465 HIS D -5 REMARK 465 HIS D -4 REMARK 465 HIS D -3 REMARK 465 HIS D -2 REMARK 465 SER D -1 REMARK 465 SER D 0 REMARK 465 GLY D 1 REMARK 465 LEU D 2 REMARK 465 VAL D 3 REMARK 465 PRO D 4 REMARK 465 GLN D 5 REMARK 465 GLY D 6 REMARK 465 SER D 7 REMARK 465 HIS D 8 REMARK 465 MET D 9 REMARK 465 LYS D 10 REMARK 465 THR D 11 REMARK 465 CYS D 12 REMARK 465 VAL D 13 REMARK 465 PRO D 14 REMARK 465 ALA D 15 REMARK 465 ASP D 16 REMARK 465 ILE D 17 REMARK 465 ASN D 18 REMARK 465 LYS D 19 REMARK 465 GLU D 20 REMARK 465 GLU D 21 REMARK 465 GLU D 99 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 33 44.59 -87.13 REMARK 500 ASN A 35 47.33 -109.27 REMARK 500 ARG A 72 64.61 60.61 REMARK 500 SER A 87 75.26 -150.92 REMARK 500 PHE B 33 47.37 -80.29 REMARK 500 ASN B 35 50.48 -109.56 REMARK 500 ALA B 50 3.51 -69.46 REMARK 500 SER B 65 -70.18 -80.49 REMARK 500 HIS B 67 16.52 56.78 REMARK 500 SER B 87 98.78 -162.19 REMARK 500 ASN B 94 34.70 -91.35 REMARK 500 PHE B 96 27.04 -71.84 REMARK 500 ASN C 35 48.83 -107.71 REMARK 500 ARG C 72 52.85 72.03 REMARK 500 SER C 87 86.34 -165.81 REMARK 500 PHE D 33 33.93 -88.75 REMARK 500 ASN D 35 42.21 -103.33 REMARK 500 SER D 87 91.90 -164.99 REMARK 500 ASN D 89 57.69 -100.80 REMARK 500 TYR D 97 54.27 -108.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 500 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 63 SG REMARK 620 2 CYS A 66 SG 101.3 REMARK 620 3 HIS A 83 NE2 97.9 119.9 REMARK 620 4 CYS A 90 SG 112.0 110.2 113.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 500 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 63 SG REMARK 620 2 CYS B 66 SG 105.7 REMARK 620 3 HIS B 83 NE2 87.3 107.8 REMARK 620 4 CYS B 90 SG 124.5 118.7 107.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 500 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 63 SG REMARK 620 2 CYS C 66 SG 98.2 REMARK 620 3 HIS C 83 NE2 100.0 105.5 REMARK 620 4 CYS C 90 SG 122.9 112.6 115.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 500 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 63 SG REMARK 620 2 CYS D 66 SG 98.1 REMARK 620 3 HIS D 83 NE2 89.0 102.4 REMARK 620 4 CYS D 90 SG 130.7 113.5 117.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4MTZ RELATED DB: PDB REMARK 900 4MTZ CONTAINS THE SAME PROTEIN COMPLEXED WITH NF023 DBREF 4OXC A 10 99 UNP P98170 XIAP_HUMAN 10 99 DBREF 4OXC B 10 99 UNP P98170 XIAP_HUMAN 10 99 DBREF 4OXC C 10 99 UNP P98170 XIAP_HUMAN 10 99 DBREF 4OXC D 10 99 UNP P98170 XIAP_HUMAN 10 99 SEQADV 4OXC MET A -11 UNP P98170 EXPRESSION TAG SEQADV 4OXC GLY A -10 UNP P98170 EXPRESSION TAG SEQADV 4OXC SER A -9 UNP P98170 EXPRESSION TAG SEQADV 4OXC SER A -8 UNP P98170 EXPRESSION TAG SEQADV 4OXC HIS A -7 UNP P98170 EXPRESSION TAG SEQADV 4OXC HIS A -6 UNP P98170 EXPRESSION TAG SEQADV 4OXC HIS A -5 UNP P98170 EXPRESSION TAG SEQADV 4OXC HIS A -4 UNP P98170 EXPRESSION TAG SEQADV 4OXC HIS A -3 UNP P98170 EXPRESSION TAG SEQADV 4OXC HIS A -2 UNP P98170 EXPRESSION TAG SEQADV 4OXC SER A -1 UNP P98170 EXPRESSION TAG SEQADV 4OXC SER A 0 UNP P98170 EXPRESSION TAG SEQADV 4OXC GLY A 1 UNP P98170 EXPRESSION TAG SEQADV 4OXC LEU A 2 UNP P98170 EXPRESSION TAG SEQADV 4OXC VAL A 3 UNP P98170 EXPRESSION TAG SEQADV 4OXC PRO A 4 UNP P98170 EXPRESSION TAG SEQADV 4OXC GLN A 5 UNP P98170 EXPRESSION TAG SEQADV 4OXC GLY A 6 UNP P98170 EXPRESSION TAG SEQADV 4OXC SER A 7 UNP P98170 EXPRESSION TAG SEQADV 4OXC HIS A 8 UNP P98170 EXPRESSION TAG SEQADV 4OXC MET A 9 UNP P98170 EXPRESSION TAG SEQADV 4OXC MET B -11 UNP P98170 EXPRESSION TAG SEQADV 4OXC GLY B -10 UNP P98170 EXPRESSION TAG SEQADV 4OXC SER B -9 UNP P98170 EXPRESSION TAG SEQADV 4OXC SER B -8 UNP P98170 EXPRESSION TAG SEQADV 4OXC HIS B -7 UNP P98170 EXPRESSION TAG SEQADV 4OXC HIS B -6 UNP P98170 EXPRESSION TAG SEQADV 4OXC HIS B -5 UNP P98170 EXPRESSION TAG SEQADV 4OXC HIS B -4 UNP P98170 EXPRESSION TAG SEQADV 4OXC HIS B -3 UNP P98170 EXPRESSION TAG SEQADV 4OXC HIS B -2 UNP P98170 EXPRESSION TAG SEQADV 4OXC SER B -1 UNP P98170 EXPRESSION TAG SEQADV 4OXC SER B 0 UNP P98170 EXPRESSION TAG SEQADV 4OXC GLY B 1 UNP P98170 EXPRESSION TAG SEQADV 4OXC LEU B 2 UNP P98170 EXPRESSION TAG SEQADV 4OXC VAL B 3 UNP P98170 EXPRESSION TAG SEQADV 4OXC PRO B 4 UNP P98170 EXPRESSION TAG SEQADV 4OXC GLN B 5 UNP P98170 EXPRESSION TAG SEQADV 4OXC GLY B 6 UNP P98170 EXPRESSION TAG SEQADV 4OXC SER B 7 UNP P98170 EXPRESSION TAG SEQADV 4OXC HIS B 8 UNP P98170 EXPRESSION TAG SEQADV 4OXC MET B 9 UNP P98170 EXPRESSION TAG SEQADV 4OXC MET C -11 UNP P98170 EXPRESSION TAG SEQADV 4OXC GLY C -10 UNP P98170 EXPRESSION TAG SEQADV 4OXC SER C -9 UNP P98170 EXPRESSION TAG SEQADV 4OXC SER C -8 UNP P98170 EXPRESSION TAG SEQADV 4OXC HIS C -7 UNP P98170 EXPRESSION TAG SEQADV 4OXC HIS C -6 UNP P98170 EXPRESSION TAG SEQADV 4OXC HIS C -5 UNP P98170 EXPRESSION TAG SEQADV 4OXC HIS C -4 UNP P98170 EXPRESSION TAG SEQADV 4OXC HIS C -3 UNP P98170 EXPRESSION TAG SEQADV 4OXC HIS C -2 UNP P98170 EXPRESSION TAG SEQADV 4OXC SER C -1 UNP P98170 EXPRESSION TAG SEQADV 4OXC SER C 0 UNP P98170 EXPRESSION TAG SEQADV 4OXC GLY C 1 UNP P98170 EXPRESSION TAG SEQADV 4OXC LEU C 2 UNP P98170 EXPRESSION TAG SEQADV 4OXC VAL C 3 UNP P98170 EXPRESSION TAG SEQADV 4OXC PRO C 4 UNP P98170 EXPRESSION TAG SEQADV 4OXC GLN C 5 UNP P98170 EXPRESSION TAG SEQADV 4OXC GLY C 6 UNP P98170 EXPRESSION TAG SEQADV 4OXC SER C 7 UNP P98170 EXPRESSION TAG SEQADV 4OXC HIS C 8 UNP P98170 EXPRESSION TAG SEQADV 4OXC MET C 9 UNP P98170 EXPRESSION TAG SEQADV 4OXC MET D -11 UNP P98170 EXPRESSION TAG SEQADV 4OXC GLY D -10 UNP P98170 EXPRESSION TAG SEQADV 4OXC SER D -9 UNP P98170 EXPRESSION TAG SEQADV 4OXC SER D -8 UNP P98170 EXPRESSION TAG SEQADV 4OXC HIS D -7 UNP P98170 EXPRESSION TAG SEQADV 4OXC HIS D -6 UNP P98170 EXPRESSION TAG SEQADV 4OXC HIS D -5 UNP P98170 EXPRESSION TAG SEQADV 4OXC HIS D -4 UNP P98170 EXPRESSION TAG SEQADV 4OXC HIS D -3 UNP P98170 EXPRESSION TAG SEQADV 4OXC HIS D -2 UNP P98170 EXPRESSION TAG SEQADV 4OXC SER D -1 UNP P98170 EXPRESSION TAG SEQADV 4OXC SER D 0 UNP P98170 EXPRESSION TAG SEQADV 4OXC GLY D 1 UNP P98170 EXPRESSION TAG SEQADV 4OXC LEU D 2 UNP P98170 EXPRESSION TAG SEQADV 4OXC VAL D 3 UNP P98170 EXPRESSION TAG SEQADV 4OXC PRO D 4 UNP P98170 EXPRESSION TAG SEQADV 4OXC GLN D 5 UNP P98170 EXPRESSION TAG SEQADV 4OXC GLY D 6 UNP P98170 EXPRESSION TAG SEQADV 4OXC SER D 7 UNP P98170 EXPRESSION TAG SEQADV 4OXC HIS D 8 UNP P98170 EXPRESSION TAG SEQADV 4OXC MET D 9 UNP P98170 EXPRESSION TAG SEQRES 1 A 111 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 111 LEU VAL PRO GLN GLY SER HIS MET LYS THR CYS VAL PRO SEQRES 3 A 111 ALA ASP ILE ASN LYS GLU GLU GLU PHE VAL GLU GLU PHE SEQRES 4 A 111 ASN ARG LEU LYS THR PHE ALA ASN PHE PRO SER GLY SER SEQRES 5 A 111 PRO VAL SER ALA SER THR LEU ALA ARG ALA GLY PHE LEU SEQRES 6 A 111 TYR THR GLY GLU GLY ASP THR VAL ARG CYS PHE SER CYS SEQRES 7 A 111 HIS ALA ALA VAL ASP ARG TRP GLN TYR GLY ASP SER ALA SEQRES 8 A 111 VAL GLY ARG HIS ARG LYS VAL SER PRO ASN CYS ARG PHE SEQRES 9 A 111 ILE ASN GLY PHE TYR LEU GLU SEQRES 1 B 111 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 111 LEU VAL PRO GLN GLY SER HIS MET LYS THR CYS VAL PRO SEQRES 3 B 111 ALA ASP ILE ASN LYS GLU GLU GLU PHE VAL GLU GLU PHE SEQRES 4 B 111 ASN ARG LEU LYS THR PHE ALA ASN PHE PRO SER GLY SER SEQRES 5 B 111 PRO VAL SER ALA SER THR LEU ALA ARG ALA GLY PHE LEU SEQRES 6 B 111 TYR THR GLY GLU GLY ASP THR VAL ARG CYS PHE SER CYS SEQRES 7 B 111 HIS ALA ALA VAL ASP ARG TRP GLN TYR GLY ASP SER ALA SEQRES 8 B 111 VAL GLY ARG HIS ARG LYS VAL SER PRO ASN CYS ARG PHE SEQRES 9 B 111 ILE ASN GLY PHE TYR LEU GLU SEQRES 1 C 111 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 C 111 LEU VAL PRO GLN GLY SER HIS MET LYS THR CYS VAL PRO SEQRES 3 C 111 ALA ASP ILE ASN LYS GLU GLU GLU PHE VAL GLU GLU PHE SEQRES 4 C 111 ASN ARG LEU LYS THR PHE ALA ASN PHE PRO SER GLY SER SEQRES 5 C 111 PRO VAL SER ALA SER THR LEU ALA ARG ALA GLY PHE LEU SEQRES 6 C 111 TYR THR GLY GLU GLY ASP THR VAL ARG CYS PHE SER CYS SEQRES 7 C 111 HIS ALA ALA VAL ASP ARG TRP GLN TYR GLY ASP SER ALA SEQRES 8 C 111 VAL GLY ARG HIS ARG LYS VAL SER PRO ASN CYS ARG PHE SEQRES 9 C 111 ILE ASN GLY PHE TYR LEU GLU SEQRES 1 D 111 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 D 111 LEU VAL PRO GLN GLY SER HIS MET LYS THR CYS VAL PRO SEQRES 3 D 111 ALA ASP ILE ASN LYS GLU GLU GLU PHE VAL GLU GLU PHE SEQRES 4 D 111 ASN ARG LEU LYS THR PHE ALA ASN PHE PRO SER GLY SER SEQRES 5 D 111 PRO VAL SER ALA SER THR LEU ALA ARG ALA GLY PHE LEU SEQRES 6 D 111 TYR THR GLY GLU GLY ASP THR VAL ARG CYS PHE SER CYS SEQRES 7 D 111 HIS ALA ALA VAL ASP ARG TRP GLN TYR GLY ASP SER ALA SEQRES 8 D 111 VAL GLY ARG HIS ARG LYS VAL SER PRO ASN CYS ARG PHE SEQRES 9 D 111 ILE ASN GLY PHE TYR LEU GLU HET ZN A 500 1 HET ZN B 500 1 HET ZN C 500 1 HET ZN D 500 1 HETNAM ZN ZINC ION FORMUL 5 ZN 4(ZN 2+) FORMUL 9 HOH *48(H2 O) HELIX 1 AA1 GLU A 25 LYS A 31 1 7 HELIX 2 AA2 SER A 43 ALA A 50 1 8 HELIX 3 AA3 SER A 78 SER A 87 1 10 HELIX 4 AA4 GLU B 25 PHE B 33 1 9 HELIX 5 AA5 SER B 43 ALA B 50 1 8 HELIX 6 AA6 SER B 78 SER B 87 1 10 HELIX 7 AA7 GLU C 25 THR C 32 1 8 HELIX 8 AA8 SER C 43 ALA C 50 1 8 HELIX 9 AA9 SER C 78 SER C 87 1 10 HELIX 10 AB1 GLU D 25 THR D 32 1 8 HELIX 11 AB2 SER D 43 ALA D 50 1 8 HELIX 12 AB3 SER D 78 SER D 87 1 10 SHEET 1 AA1 3 PHE A 52 TYR A 54 0 SHEET 2 AA1 3 VAL A 61 CYS A 63 -1 O ARG A 62 N LEU A 53 SHEET 3 AA1 3 ALA A 69 VAL A 70 -1 O VAL A 70 N VAL A 61 SHEET 1 AA2 3 PHE B 52 TYR B 54 0 SHEET 2 AA2 3 VAL B 61 CYS B 63 -1 O ARG B 62 N LEU B 53 SHEET 3 AA2 3 ALA B 69 VAL B 70 -1 O VAL B 70 N VAL B 61 SHEET 1 AA3 3 PHE C 52 TYR C 54 0 SHEET 2 AA3 3 VAL C 61 CYS C 63 -1 O ARG C 62 N LEU C 53 SHEET 3 AA3 3 ALA C 69 VAL C 70 -1 O VAL C 70 N VAL C 61 SHEET 1 AA4 3 PHE D 52 GLU D 57 0 SHEET 2 AA4 3 THR D 60 CYS D 63 -1 O THR D 60 N GLU D 57 SHEET 3 AA4 3 ALA D 69 VAL D 70 -1 O VAL D 70 N VAL D 61 LINK SG CYS A 63 ZN ZN A 500 1555 1555 2.08 LINK SG CYS A 66 ZN ZN A 500 1555 1555 2.32 LINK NE2 HIS A 83 ZN ZN A 500 1555 1555 2.12 LINK SG CYS A 90 ZN ZN A 500 1555 1555 2.26 LINK SG CYS B 63 ZN ZN B 500 1555 1555 2.31 LINK SG CYS B 66 ZN ZN B 500 1555 1555 2.16 LINK NE2 HIS B 83 ZN ZN B 500 1555 1555 2.21 LINK SG CYS B 90 ZN ZN B 500 1555 1555 2.22 LINK SG CYS C 63 ZN ZN C 500 1555 1555 2.17 LINK SG CYS C 66 ZN ZN C 500 1555 1555 2.12 LINK NE2 HIS C 83 ZN ZN C 500 1555 1555 2.10 LINK SG CYS C 90 ZN ZN C 500 1555 1555 2.29 LINK SG CYS D 63 ZN ZN D 500 1555 1555 2.11 LINK SG CYS D 66 ZN ZN D 500 1555 1555 2.16 LINK NE2 HIS D 83 ZN ZN D 500 1555 1555 2.29 LINK SG CYS D 90 ZN ZN D 500 1555 1555 2.07 SITE 1 AC1 4 CYS A 63 CYS A 66 HIS A 83 CYS A 90 SITE 1 AC2 4 CYS B 63 CYS B 66 HIS B 83 CYS B 90 SITE 1 AC3 4 CYS C 63 CYS C 66 HIS C 83 CYS C 90 SITE 1 AC4 4 CYS D 63 CYS D 66 HIS D 83 CYS D 90 CRYST1 36.630 72.390 69.870 90.00 95.69 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027300 0.000000 0.002720 0.00000 SCALE2 0.000000 0.013814 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014383 0.00000