PDB Short entry for 4PC0 HEADER CELL CYCLE 14-APR-14 4PC0 TITLE STRUCTURE OF THE HUMAN RBAP48-MTA1(670-711) COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE-BINDING PROTEIN RBBP4; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT C,CAF-1 SUBUNIT C, COMPND 5 CHROMATIN ASSEMBLY FACTOR I P48 SUBUNIT,CAF-I P48,NUCLEOSOME- COMPND 6 REMODELING FACTOR SUBUNIT RBAP48,RETINOBLASTOMA-BINDING PROTEIN 4, COMPND 7 RBBP-4,RETINOBLASTOMA-BINDING PROTEIN P48; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: METASTASIS-ASSOCIATED PROTEIN MTA1; COMPND 11 CHAIN: C, D; COMPND 12 FRAGMENT: RESIDUES 653-694; COMPND 13 SYNONYM: HUMAN MTA1; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RBBP4, RBAP48; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PFBDM; SOURCE 12 MOL_ID: 2; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 15 ORGANISM_COMMON: HUMAN; SOURCE 16 ORGANISM_TAXID: 9606 KEYWDS CELL CYCLE, MTA1-NURD SUBCOMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.S.M.ALQARNI,A.P.G.SILVA,J.P.MACKAY,E.D.LAUE REVDAT 6 20-DEC-23 4PC0 1 LINK REVDAT 5 04-FEB-15 4PC0 1 REMARK REVDAT 4 17-DEC-14 4PC0 1 REMARK REVDAT 3 20-AUG-14 4PC0 1 JRNL REVDAT 2 25-JUN-14 4PC0 1 JRNL REVDAT 1 11-JUN-14 4PC0 0 JRNL AUTH S.S.ALQARNI,A.MURTHY,W.ZHANG,M.R.PRZEWLOKA,A.P.SILVA, JRNL AUTH 2 A.A.WATSON,S.LEJON,X.Y.PEI,A.H.SMITS,S.L.KLOET,H.WANG, JRNL AUTH 3 N.E.SHEPHERD,P.H.STOKES,G.A.BLOBEL,M.VERMEULEN,D.M.GLOVER, JRNL AUTH 4 J.P.MACKAY,E.D.LAUE JRNL TITL INSIGHT INTO THE ARCHITECTURE OF THE NURD COMPLEX: STRUCTURE JRNL TITL 2 OF THE RBAP48-MTA1 SUB-COMPLEX. JRNL REF J.BIOL.CHEM. V. 289 21844 2014 JRNL REFN ISSN 0021-9258 JRNL PMID 24920672 JRNL DOI 10.1074/JBC.M114.558940 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.6 REMARK 3 NUMBER OF REFLECTIONS : 33713 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1705 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2545 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.89 REMARK 3 BIN R VALUE (WORKING SET) : 0.2570 REMARK 3 BIN FREE R VALUE SET COUNT : 138 REMARK 3 BIN FREE R VALUE : 0.3330 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6726 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 360 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.32000 REMARK 3 B22 (A**2) : -1.57000 REMARK 3 B33 (A**2) : -0.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -3.51000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.749 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.321 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.226 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.318 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.904 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6914 ; 0.006 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 6316 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9412 ; 1.041 ; 1.934 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14621 ; 2.341 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 842 ; 5.894 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 337 ;32.176 ;24.985 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1131 ;13.166 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;15.761 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1019 ; 0.061 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7849 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1575 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3380 ; 1.294 ; 3.337 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3379 ; 1.293 ; 3.336 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4218 ; 2.282 ; 4.998 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 2 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 10 409 B 10 409 23885 0.070 0.050 REMARK 3 2 C 671 690 D 671 690 1017 0.040 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4PC0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-APR-14. REMARK 100 THE DEPOSITION ID IS D_1000201127. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33957 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 61.610 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.1 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 0.35700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2XU7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M CALCIUM ACETATE AND 20% W/V PEG REMARK 280 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 61.61500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ASP A 3 REMARK 465 LYS A 4 REMARK 465 GLU A 5 REMARK 465 ALA A 6 REMARK 465 ALA A 7 REMARK 465 PHE A 8 REMARK 465 ASP A 9 REMARK 465 GLU A 412 REMARK 465 ASP A 413 REMARK 465 PRO A 414 REMARK 465 GLU A 415 REMARK 465 GLY A 416 REMARK 465 SER A 417 REMARK 465 VAL A 418 REMARK 465 ASP A 419 REMARK 465 PRO A 420 REMARK 465 GLU A 421 REMARK 465 GLY A 422 REMARK 465 GLN A 423 REMARK 465 GLY A 424 REMARK 465 SER A 425 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ASP B 3 REMARK 465 LYS B 4 REMARK 465 GLU B 5 REMARK 465 ALA B 6 REMARK 465 ASP B 411 REMARK 465 GLU B 412 REMARK 465 ASP B 413 REMARK 465 PRO B 414 REMARK 465 GLU B 415 REMARK 465 GLY B 416 REMARK 465 SER B 417 REMARK 465 VAL B 418 REMARK 465 ASP B 419 REMARK 465 PRO B 420 REMARK 465 GLU B 421 REMARK 465 GLY B 422 REMARK 465 GLN B 423 REMARK 465 GLY B 424 REMARK 465 SER B 425 REMARK 465 LYS C 670 REMARK 465 ARG C 691 REMARK 465 GLN C 692 REMARK 465 SER C 693 REMARK 465 GLN C 694 REMARK 465 ALA C 695 REMARK 465 LEU C 696 REMARK 465 PRO C 697 REMARK 465 PRO C 698 REMARK 465 ARG C 699 REMARK 465 PRO C 700 REMARK 465 PRO C 701 REMARK 465 PRO C 702 REMARK 465 PRO C 703 REMARK 465 ALA C 704 REMARK 465 PRO C 705 REMARK 465 VAL C 706 REMARK 465 ASN C 707 REMARK 465 ASP C 708 REMARK 465 GLU C 709 REMARK 465 PRO C 710 REMARK 465 ILE C 711 REMARK 465 LYS D 670 REMARK 465 ARG D 691 REMARK 465 GLN D 692 REMARK 465 SER D 693 REMARK 465 GLN D 694 REMARK 465 ALA D 695 REMARK 465 LEU D 696 REMARK 465 PRO D 697 REMARK 465 PRO D 698 REMARK 465 ARG D 699 REMARK 465 PRO D 700 REMARK 465 PRO D 701 REMARK 465 PRO D 702 REMARK 465 PRO D 703 REMARK 465 ALA D 704 REMARK 465 PRO D 705 REMARK 465 VAL D 706 REMARK 465 ASN D 707 REMARK 465 ASP D 708 REMARK 465 GLU D 709 REMARK 465 PRO D 710 REMARK 465 ILE D 711 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 97 52.58 -117.42 REMARK 500 ASN A 136 88.60 -155.35 REMARK 500 HIS A 200 4.75 81.76 REMARK 500 LYS A 212 11.40 57.02 REMARK 500 ASN A 305 84.30 -156.28 REMARK 500 SER A 315 -37.29 155.05 REMARK 500 TRP A 388 -3.43 73.95 REMARK 500 ASN A 397 -9.50 88.40 REMARK 500 ASN A 410 75.42 -103.76 REMARK 500 HIS B 200 3.58 83.75 REMARK 500 LYS B 212 -19.40 -49.90 REMARK 500 ASN B 305 85.32 -157.30 REMARK 500 SER B 315 -21.92 143.54 REMARK 500 TRP B 388 -3.91 71.71 REMARK 500 ASN B 397 -12.08 91.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 100 O REMARK 620 2 HOH A 603 O 27.1 REMARK 620 3 GLU B 330 OE1 27.5 1.6 REMARK 620 4 GLU B 330 OE2 29.1 2.8 1.7 REMARK 620 5 HOH B 611 O 30.1 3.0 3.4 2.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 330 OE1 REMARK 620 2 GLU A 330 OE2 46.4 REMARK 620 3 HOH A 614 O 115.7 72.0 REMARK 620 4 HOH A 622 O 107.1 124.5 91.6 REMARK 620 5 SER B 100 O 76.3 56.4 52.0 71.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4PBY RELATED DB: PDB REMARK 900 INSIGHT INTO THE ARCHITECTURE OF THE NURD COMPLEX: STRUCTURE OF THE REMARK 900 RBAP48-MTA1 SUB-COMPLEX REMARK 900 RELATED ID: 4PBZ RELATED DB: PDB REMARK 900 INSIGHT INTO THE ARCHITECTURE OF THE NURD COMPLEX: STRUCTURE OF THE REMARK 900 RBAP48-MTA1 SUB-COMPLEX DBREF 4PC0 A 1 425 UNP Q09028 RBBP4_HUMAN 1 425 DBREF 4PC0 B 1 425 UNP Q09028 RBBP4_HUMAN 1 425 DBREF 4PC0 C 670 711 UNP Q13330 MTA1_HUMAN 653 694 DBREF 4PC0 D 670 711 UNP Q13330 MTA1_HUMAN 653 694 SEQRES 1 A 425 MET ALA ASP LYS GLU ALA ALA PHE ASP ASP ALA VAL GLU SEQRES 2 A 425 GLU ARG VAL ILE ASN GLU GLU TYR LYS ILE TRP LYS LYS SEQRES 3 A 425 ASN THR PRO PHE LEU TYR ASP LEU VAL MET THR HIS ALA SEQRES 4 A 425 LEU GLU TRP PRO SER LEU THR ALA GLN TRP LEU PRO ASP SEQRES 5 A 425 VAL THR ARG PRO GLU GLY LYS ASP PHE SER ILE HIS ARG SEQRES 6 A 425 LEU VAL LEU GLY THR HIS THR SER ASP GLU GLN ASN HIS SEQRES 7 A 425 LEU VAL ILE ALA SER VAL GLN LEU PRO ASN ASP ASP ALA SEQRES 8 A 425 GLN PHE ASP ALA SER HIS TYR ASP SER GLU LYS GLY GLU SEQRES 9 A 425 PHE GLY GLY PHE GLY SER VAL SER GLY LYS ILE GLU ILE SEQRES 10 A 425 GLU ILE LYS ILE ASN HIS GLU GLY GLU VAL ASN ARG ALA SEQRES 11 A 425 ARG TYR MET PRO GLN ASN PRO CYS ILE ILE ALA THR LYS SEQRES 12 A 425 THR PRO SER SER ASP VAL LEU VAL PHE ASP TYR THR LYS SEQRES 13 A 425 HIS PRO SER LYS PRO ASP PRO SER GLY GLU CYS ASN PRO SEQRES 14 A 425 ASP LEU ARG LEU ARG GLY HIS GLN LYS GLU GLY TYR GLY SEQRES 15 A 425 LEU SER TRP ASN PRO ASN LEU SER GLY HIS LEU LEU SER SEQRES 16 A 425 ALA SER ASP ASP HIS THR ILE CYS LEU TRP ASP ILE SER SEQRES 17 A 425 ALA VAL PRO LYS GLU GLY LYS VAL VAL ASP ALA LYS THR SEQRES 18 A 425 ILE PHE THR GLY HIS THR ALA VAL VAL GLU ASP VAL SER SEQRES 19 A 425 TRP HIS LEU LEU HIS GLU SER LEU PHE GLY SER VAL ALA SEQRES 20 A 425 ASP ASP GLN LYS LEU MET ILE TRP ASP THR ARG SER ASN SEQRES 21 A 425 ASN THR SER LYS PRO SER HIS SER VAL ASP ALA HIS THR SEQRES 22 A 425 ALA GLU VAL ASN CYS LEU SER PHE ASN PRO TYR SER GLU SEQRES 23 A 425 PHE ILE LEU ALA THR GLY SER ALA ASP LYS THR VAL ALA SEQRES 24 A 425 LEU TRP ASP LEU ARG ASN LEU LYS LEU LYS LEU HIS SER SEQRES 25 A 425 PHE GLU SER HIS LYS ASP GLU ILE PHE GLN VAL GLN TRP SEQRES 26 A 425 SER PRO HIS ASN GLU THR ILE LEU ALA SER SER GLY THR SEQRES 27 A 425 ASP ARG ARG LEU ASN VAL TRP ASP LEU SER LYS ILE GLY SEQRES 28 A 425 GLU GLU GLN SER PRO GLU ASP ALA GLU ASP GLY PRO PRO SEQRES 29 A 425 GLU LEU LEU PHE ILE HIS GLY GLY HIS THR ALA LYS ILE SEQRES 30 A 425 SER ASP PHE SER TRP ASN PRO ASN GLU PRO TRP VAL ILE SEQRES 31 A 425 CYS SER VAL SER GLU ASP ASN ILE MET GLN VAL TRP GLN SEQRES 32 A 425 MET ALA GLU ASN ILE TYR ASN ASP GLU ASP PRO GLU GLY SEQRES 33 A 425 SER VAL ASP PRO GLU GLY GLN GLY SER SEQRES 1 B 425 MET ALA ASP LYS GLU ALA ALA PHE ASP ASP ALA VAL GLU SEQRES 2 B 425 GLU ARG VAL ILE ASN GLU GLU TYR LYS ILE TRP LYS LYS SEQRES 3 B 425 ASN THR PRO PHE LEU TYR ASP LEU VAL MET THR HIS ALA SEQRES 4 B 425 LEU GLU TRP PRO SER LEU THR ALA GLN TRP LEU PRO ASP SEQRES 5 B 425 VAL THR ARG PRO GLU GLY LYS ASP PHE SER ILE HIS ARG SEQRES 6 B 425 LEU VAL LEU GLY THR HIS THR SER ASP GLU GLN ASN HIS SEQRES 7 B 425 LEU VAL ILE ALA SER VAL GLN LEU PRO ASN ASP ASP ALA SEQRES 8 B 425 GLN PHE ASP ALA SER HIS TYR ASP SER GLU LYS GLY GLU SEQRES 9 B 425 PHE GLY GLY PHE GLY SER VAL SER GLY LYS ILE GLU ILE SEQRES 10 B 425 GLU ILE LYS ILE ASN HIS GLU GLY GLU VAL ASN ARG ALA SEQRES 11 B 425 ARG TYR MET PRO GLN ASN PRO CYS ILE ILE ALA THR LYS SEQRES 12 B 425 THR PRO SER SER ASP VAL LEU VAL PHE ASP TYR THR LYS SEQRES 13 B 425 HIS PRO SER LYS PRO ASP PRO SER GLY GLU CYS ASN PRO SEQRES 14 B 425 ASP LEU ARG LEU ARG GLY HIS GLN LYS GLU GLY TYR GLY SEQRES 15 B 425 LEU SER TRP ASN PRO ASN LEU SER GLY HIS LEU LEU SER SEQRES 16 B 425 ALA SER ASP ASP HIS THR ILE CYS LEU TRP ASP ILE SER SEQRES 17 B 425 ALA VAL PRO LYS GLU GLY LYS VAL VAL ASP ALA LYS THR SEQRES 18 B 425 ILE PHE THR GLY HIS THR ALA VAL VAL GLU ASP VAL SER SEQRES 19 B 425 TRP HIS LEU LEU HIS GLU SER LEU PHE GLY SER VAL ALA SEQRES 20 B 425 ASP ASP GLN LYS LEU MET ILE TRP ASP THR ARG SER ASN SEQRES 21 B 425 ASN THR SER LYS PRO SER HIS SER VAL ASP ALA HIS THR SEQRES 22 B 425 ALA GLU VAL ASN CYS LEU SER PHE ASN PRO TYR SER GLU SEQRES 23 B 425 PHE ILE LEU ALA THR GLY SER ALA ASP LYS THR VAL ALA SEQRES 24 B 425 LEU TRP ASP LEU ARG ASN LEU LYS LEU LYS LEU HIS SER SEQRES 25 B 425 PHE GLU SER HIS LYS ASP GLU ILE PHE GLN VAL GLN TRP SEQRES 26 B 425 SER PRO HIS ASN GLU THR ILE LEU ALA SER SER GLY THR SEQRES 27 B 425 ASP ARG ARG LEU ASN VAL TRP ASP LEU SER LYS ILE GLY SEQRES 28 B 425 GLU GLU GLN SER PRO GLU ASP ALA GLU ASP GLY PRO PRO SEQRES 29 B 425 GLU LEU LEU PHE ILE HIS GLY GLY HIS THR ALA LYS ILE SEQRES 30 B 425 SER ASP PHE SER TRP ASN PRO ASN GLU PRO TRP VAL ILE SEQRES 31 B 425 CYS SER VAL SER GLU ASP ASN ILE MET GLN VAL TRP GLN SEQRES 32 B 425 MET ALA GLU ASN ILE TYR ASN ASP GLU ASP PRO GLU GLY SEQRES 33 B 425 SER VAL ASP PRO GLU GLY GLN GLY SER SEQRES 1 C 42 LYS LEU LEU SER SER SER GLU THR LYS ARG ALA ALA ARG SEQRES 2 C 42 ARG PRO TYR LYS PRO ILE ALA LEU ARG GLN SER GLN ALA SEQRES 3 C 42 LEU PRO PRO ARG PRO PRO PRO PRO ALA PRO VAL ASN ASP SEQRES 4 C 42 GLU PRO ILE SEQRES 1 D 42 LYS LEU LEU SER SER SER GLU THR LYS ARG ALA ALA ARG SEQRES 2 D 42 ARG PRO TYR LYS PRO ILE ALA LEU ARG GLN SER GLN ALA SEQRES 3 D 42 LEU PRO PRO ARG PRO PRO PRO PRO ALA PRO VAL ASN ASP SEQRES 4 D 42 GLU PRO ILE HET GOL A 501 6 HET CA A 502 1 HET CA B 501 1 HETNAM GOL GLYCEROL HETNAM CA CALCIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 GOL C3 H8 O3 FORMUL 6 CA 2(CA 2+) FORMUL 8 HOH *360(H2 O) HELIX 1 AA1 ASP A 10 LEU A 31 1 22 HELIX 2 AA2 THR A 155 HIS A 157 5 3 HELIX 3 AA3 VAL A 210 GLY A 214 5 5 HELIX 4 AA4 SER A 348 ILE A 350 5 3 HELIX 5 AA5 SER A 355 GLU A 360 1 6 HELIX 6 AA6 ALA A 405 ASN A 410 1 6 HELIX 7 AA7 ASP B 10 LEU B 31 1 22 HELIX 8 AA8 THR B 155 HIS B 157 5 3 HELIX 9 AA9 SER B 348 ILE B 350 5 3 HELIX 10 AB1 SER B 355 GLU B 360 1 6 HELIX 11 AB2 ALA B 405 ASN B 410 1 6 HELIX 12 AB3 SER C 673 ARG C 682 1 10 HELIX 13 AB4 SER D 673 ARG D 682 1 10 SHEET 1 AA1 4 TYR A 32 ALA A 39 0 SHEET 2 AA1 4 ILE A 398 MET A 404 -1 O GLN A 403 N LEU A 34 SHEET 3 AA1 4 VAL A 389 SER A 394 -1 N SER A 392 O GLN A 400 SHEET 4 AA1 4 ILE A 377 TRP A 382 -1 N SER A 381 O CYS A 391 SHEET 1 AA2 4 ALA A 47 THR A 54 0 SHEET 2 AA2 4 PHE A 61 GLY A 69 -1 O ARG A 65 N LEU A 50 SHEET 3 AA2 4 ASN A 77 PRO A 87 -1 O VAL A 80 N LEU A 68 SHEET 4 AA2 4 ILE A 115 HIS A 123 -1 O ILE A 121 N LEU A 79 SHEET 1 AA3 5 ARG A 129 MET A 133 0 SHEET 2 AA3 5 ASN A 136 LYS A 143 -1 O ILE A 139 N MET A 133 SHEET 3 AA3 5 VAL A 149 ASP A 153 -1 O PHE A 152 N ILE A 140 SHEET 4 AA3 5 LEU A 171 ARG A 174 -1 O LEU A 173 N VAL A 149 SHEET 5 AA3 5 VAL A 216 ASP A 218 1 O VAL A 217 N ARG A 174 SHEET 1 AA4 4 LEU A 183 TRP A 185 0 SHEET 2 AA4 4 HIS A 192 ALA A 196 -1 O LEU A 194 N SER A 184 SHEET 3 AA4 4 ILE A 202 ASP A 206 -1 O TRP A 205 N LEU A 193 SHEET 4 AA4 4 THR A 221 PHE A 223 -1 O PHE A 223 N ILE A 202 SHEET 1 AA5 4 VAL A 230 TRP A 235 0 SHEET 2 AA5 4 LEU A 242 ALA A 247 -1 O GLY A 244 N SER A 234 SHEET 3 AA5 4 LYS A 251 ASP A 256 -1 O TRP A 255 N PHE A 243 SHEET 4 AA5 4 HIS A 267 ASP A 270 -1 O VAL A 269 N LEU A 252 SHEET 1 AA6 4 VAL A 276 PHE A 281 0 SHEET 2 AA6 4 ILE A 288 SER A 293 -1 O ALA A 290 N SER A 280 SHEET 3 AA6 4 THR A 297 ASP A 302 -1 O TRP A 301 N LEU A 289 SHEET 4 AA6 4 HIS A 311 GLU A 314 -1 O PHE A 313 N VAL A 298 SHEET 1 AA7 4 ILE A 320 TRP A 325 0 SHEET 2 AA7 4 ILE A 332 GLY A 337 -1 O SER A 336 N PHE A 321 SHEET 3 AA7 4 LEU A 342 ASP A 346 -1 O TRP A 345 N LEU A 333 SHEET 4 AA7 4 LEU A 366 HIS A 370 -1 O HIS A 370 N LEU A 342 SHEET 1 AA8 4 TYR B 32 ALA B 39 0 SHEET 2 AA8 4 ILE B 398 MET B 404 -1 O GLN B 403 N LEU B 34 SHEET 3 AA8 4 VAL B 389 SER B 394 -1 N SER B 392 O GLN B 400 SHEET 4 AA8 4 ILE B 377 TRP B 382 -1 N SER B 381 O CYS B 391 SHEET 1 AA9 4 ALA B 47 THR B 54 0 SHEET 2 AA9 4 PHE B 61 GLY B 69 -1 O ARG B 65 N LEU B 50 SHEET 3 AA9 4 ASN B 77 PRO B 87 -1 O VAL B 80 N LEU B 68 SHEET 4 AA9 4 ILE B 115 HIS B 123 -1 O ILE B 121 N LEU B 79 SHEET 1 AB1 5 ARG B 129 MET B 133 0 SHEET 2 AB1 5 ASN B 136 LYS B 143 -1 O ILE B 139 N MET B 133 SHEET 3 AB1 5 VAL B 149 ASP B 153 -1 O PHE B 152 N ILE B 140 SHEET 4 AB1 5 LEU B 171 ARG B 174 -1 O LEU B 173 N VAL B 149 SHEET 5 AB1 5 VAL B 216 ASP B 218 1 O VAL B 217 N ARG B 174 SHEET 1 AB2 4 LEU B 183 TRP B 185 0 SHEET 2 AB2 4 HIS B 192 ALA B 196 -1 O LEU B 194 N SER B 184 SHEET 3 AB2 4 ILE B 202 ASP B 206 -1 O TRP B 205 N LEU B 193 SHEET 4 AB2 4 THR B 221 PHE B 223 -1 O PHE B 223 N ILE B 202 SHEET 1 AB3 4 VAL B 230 TRP B 235 0 SHEET 2 AB3 4 LEU B 242 ALA B 247 -1 O GLY B 244 N SER B 234 SHEET 3 AB3 4 LYS B 251 ASP B 256 -1 O TRP B 255 N PHE B 243 SHEET 4 AB3 4 HIS B 267 ASP B 270 -1 O VAL B 269 N LEU B 252 SHEET 1 AB4 4 VAL B 276 PHE B 281 0 SHEET 2 AB4 4 ILE B 288 SER B 293 -1 O ALA B 290 N SER B 280 SHEET 3 AB4 4 VAL B 298 ASP B 302 -1 O TRP B 301 N LEU B 289 SHEET 4 AB4 4 HIS B 311 PHE B 313 -1 O PHE B 313 N VAL B 298 SHEET 1 AB5 4 ILE B 320 TRP B 325 0 SHEET 2 AB5 4 ILE B 332 GLY B 337 -1 O SER B 336 N PHE B 321 SHEET 3 AB5 4 LEU B 342 ASP B 346 -1 O TRP B 345 N LEU B 333 SHEET 4 AB5 4 LEU B 366 HIS B 370 -1 O HIS B 370 N LEU B 342 LINK O SER A 100 CA CA B 501 1555 2646 2.45 LINK OE1 GLU A 330 CA CA A 502 1555 1555 2.35 LINK OE2 GLU A 330 CA CA A 502 1555 1555 3.02 LINK CA CA A 502 O HOH A 614 1555 1555 2.59 LINK CA CA A 502 O HOH A 622 1555 1555 2.39 LINK CA CA A 502 O SER B 100 2555 1555 2.35 LINK O HOH A 603 CA CA B 501 2656 1555 2.34 LINK OE1 GLU B 330 CA CA B 501 1555 1555 2.35 LINK OE2 GLU B 330 CA CA B 501 1555 1555 3.07 LINK CA CA B 501 O HOH B 611 1555 1555 2.43 SITE 1 AC1 3 ASP A 89 GLU A 386 GLN A 403 SITE 1 AC2 3 GLU A 330 HOH A 614 HOH A 622 SITE 1 AC3 2 GLU B 330 HOH B 611 CRYST1 52.250 123.230 87.340 90.00 103.39 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019139 0.000000 0.004556 0.00000 SCALE2 0.000000 0.008115 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011769 0.00000