PDB Short entry for 4QPQ HEADER TRANSCRIPTION/DNA 24-JUN-14 4QPQ TITLE MECHANISTIC BASIS OF PLASMID-SPECIFIC DNA BINDING OF THE F PLASMID TITLE 2 REGULATORY PROTEIN, TRAM COMPND MOL_ID: 1; COMPND 2 MOLECULE: RELAXOSOME PROTEIN TRAM; COMPND 3 CHAIN: A, B, C, D, E, F, G, H; COMPND 4 FRAGMENT: F-TRAM RHH DOMAIN, UNP RESIDUES 2-54; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: SBMA DNA1; COMPND 8 CHAIN: P; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: SBMA DNA2; COMPND 12 CHAIN: Q; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: TRAM, ECOK12F071; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 OTHER_DETAILS: SYNTHETIC DNA; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: SYNTHETIC DNA KEYWDS RHH MOTIF, DNA BINDING, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.PENG,J.LU,J.WONG,R.A.EDWARDS,L.S.FROST,J.N.M.GLOVER REVDAT 4 28-FEB-24 4QPQ 1 REMARK REVDAT 3 17-DEC-14 4QPQ 1 JRNL REVDAT 2 22-OCT-14 4QPQ 1 JRNL REVDAT 1 24-SEP-14 4QPQ 0 JRNL AUTH Y.PENG,J.LU,J.J.WONG,R.A.EDWARDS,L.S.FROST,J.N.MARK GLOVER JRNL TITL MECHANISTIC BASIS OF PLASMID-SPECIFIC DNA BINDING OF THE F JRNL TITL 2 PLASMID REGULATORY PROTEIN, TRAM. JRNL REF J.MOL.BIOL. V. 426 3783 2014 JRNL REFN ISSN 0022-2836 JRNL PMID 25284757 JRNL DOI 10.1016/J.JMB.2014.09.018 REMARK 2 REMARK 2 RESOLUTION. 3.11 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.3_1479 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.11 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.96 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 15804 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.830 REMARK 3 FREE R VALUE TEST SET COUNT : 764 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.9614 - 5.3100 1.00 3208 148 0.2144 0.1988 REMARK 3 2 5.3100 - 4.2155 1.00 3042 146 0.2298 0.2437 REMARK 3 3 4.2155 - 3.6829 1.00 2964 162 0.2315 0.2568 REMARK 3 4 3.6829 - 3.3463 1.00 2916 165 0.2267 0.2830 REMARK 3 5 3.3463 - 3.1065 0.99 2910 143 0.2346 0.2520 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.630 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 86.56 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 120.5 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 4442 REMARK 3 ANGLE : 0.594 6221 REMARK 3 CHIRALITY : 0.023 721 REMARK 3 PLANARITY : 0.001 605 REMARK 3 DIHEDRAL : 19.006 1719 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): -54.7149 14.5875 -33.4032 REMARK 3 T TENSOR REMARK 3 T11: 0.9437 T22: 0.9797 REMARK 3 T33: 0.4542 T12: -0.2561 REMARK 3 T13: -0.1070 T23: -0.0249 REMARK 3 L TENSOR REMARK 3 L11: 3.0649 L22: 6.3910 REMARK 3 L33: 5.6083 L12: -0.0805 REMARK 3 L13: 0.2263 L23: 2.8490 REMARK 3 S TENSOR REMARK 3 S11: -0.3849 S12: 0.1812 S13: -0.2998 REMARK 3 S21: -0.5172 S22: 0.6593 S23: 0.9108 REMARK 3 S31: 1.3243 S32: -0.8565 S33: -0.2931 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN D REMARK 3 ORIGIN FOR THE GROUP (A): -59.4097 26.1029 -39.1498 REMARK 3 T TENSOR REMARK 3 T11: 0.8379 T22: 1.3593 REMARK 3 T33: 0.7412 T12: 0.0013 REMARK 3 T13: -0.0489 T23: 0.0770 REMARK 3 L TENSOR REMARK 3 L11: 5.1071 L22: 2.4629 REMARK 3 L33: 4.0558 L12: -0.7690 REMARK 3 L13: -1.7040 L23: -1.6972 REMARK 3 S TENSOR REMARK 3 S11: 0.2436 S12: 0.2461 S13: 0.1672 REMARK 3 S21: -0.8123 S22: 0.1728 S23: -0.3600 REMARK 3 S31: 0.0630 S32: -0.7412 S33: -0.5601 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): -22.2722 28.7756 -41.5392 REMARK 3 T TENSOR REMARK 3 T11: 0.7200 T22: 0.8571 REMARK 3 T33: 0.6851 T12: 0.1170 REMARK 3 T13: -0.0570 T23: 0.2614 REMARK 3 L TENSOR REMARK 3 L11: 3.6124 L22: 8.0595 REMARK 3 L33: 3.4446 L12: -1.6016 REMARK 3 L13: 0.5804 L23: -0.7989 REMARK 3 S TENSOR REMARK 3 S11: 0.7307 S12: 0.5899 S13: 0.3617 REMARK 3 S21: -1.2570 S22: -0.1742 S23: -0.7629 REMARK 3 S31: -0.4779 S32: -0.3960 S33: -0.5362 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): -16.4505 17.0873 -40.8110 REMARK 3 T TENSOR REMARK 3 T11: 1.0177 T22: 0.7984 REMARK 3 T33: 0.8087 T12: 0.2458 REMARK 3 T13: 0.0990 T23: 0.0709 REMARK 3 L TENSOR REMARK 3 L11: 5.8832 L22: 7.4014 REMARK 3 L33: 3.5941 L12: -1.7036 REMARK 3 L13: 1.1112 L23: 0.5445 REMARK 3 S TENSOR REMARK 3 S11: 0.6841 S12: 0.2180 S13: -0.4980 REMARK 3 S21: -0.9622 S22: -0.2271 S23: -0.6023 REMARK 3 S31: 1.2276 S32: 0.3420 S33: -0.4599 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN E REMARK 3 ORIGIN FOR THE GROUP (A): -35.5361 15.3318 -7.3217 REMARK 3 T TENSOR REMARK 3 T11: 0.8095 T22: 0.9470 REMARK 3 T33: 0.6164 T12: -0.0082 REMARK 3 T13: -0.0358 T23: 0.0328 REMARK 3 L TENSOR REMARK 3 L11: 5.7185 L22: 3.1701 REMARK 3 L33: 9.9302 L12: 0.2325 REMARK 3 L13: 0.5163 L23: -3.4053 REMARK 3 S TENSOR REMARK 3 S11: -0.1617 S12: -0.2515 S13: -0.2232 REMARK 3 S21: -0.0876 S22: 0.9243 S23: 0.4520 REMARK 3 S31: 1.4550 S32: -1.1569 S33: -0.7437 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN H REMARK 3 ORIGIN FOR THE GROUP (A): -27.9538 26.8164 -4.6632 REMARK 3 T TENSOR REMARK 3 T11: 0.5969 T22: 1.0016 REMARK 3 T33: 0.6403 T12: 0.1659 REMARK 3 T13: -0.2009 T23: -0.0876 REMARK 3 L TENSOR REMARK 3 L11: 4.0284 L22: 6.2158 REMARK 3 L33: 9.5546 L12: 0.5289 REMARK 3 L13: 1.1374 L23: 0.7728 REMARK 3 S TENSOR REMARK 3 S11: 0.2571 S12: -0.3262 S13: 0.0622 REMARK 3 S21: 0.5749 S22: -0.4291 S23: -0.9090 REMARK 3 S31: 0.2498 S32: 0.6065 S33: -0.0563 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN F REMARK 3 ORIGIN FOR THE GROUP (A): 8.7963 22.8393 -7.3840 REMARK 3 T TENSOR REMARK 3 T11: 0.5213 T22: 0.9643 REMARK 3 T33: 0.8832 T12: 0.1475 REMARK 3 T13: -0.0095 T23: -0.1607 REMARK 3 L TENSOR REMARK 3 L11: 2.3541 L22: 5.5154 REMARK 3 L33: 8.2734 L12: 0.9631 REMARK 3 L13: -1.3379 L23: -2.1462 REMARK 3 S TENSOR REMARK 3 S11: 0.2453 S12: -0.6494 S13: 1.1204 REMARK 3 S21: 0.4698 S22: 0.2271 S23: 0.1306 REMARK 3 S31: -0.7474 S32: 0.4946 S33: -0.3249 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN G REMARK 3 ORIGIN FOR THE GROUP (A): 4.4684 11.9423 -14.3284 REMARK 3 T TENSOR REMARK 3 T11: 0.7069 T22: 0.7812 REMARK 3 T33: 0.9068 T12: 0.1826 REMARK 3 T13: 0.0489 T23: 0.0041 REMARK 3 L TENSOR REMARK 3 L11: 3.9523 L22: 3.7778 REMARK 3 L33: 6.7014 L12: -1.4853 REMARK 3 L13: 2.3119 L23: -2.4293 REMARK 3 S TENSOR REMARK 3 S11: 0.0958 S12: 0.4372 S13: 0.0468 REMARK 3 S21: -0.3683 S22: 0.5260 S23: 0.2421 REMARK 3 S31: 0.7393 S32: -0.1186 S33: -0.4351 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN P REMARK 3 ORIGIN FOR THE GROUP (A): -24.4970 27.4902 -23.8091 REMARK 3 T TENSOR REMARK 3 T11: 0.6813 T22: 1.3005 REMARK 3 T33: 1.0098 T12: 0.0726 REMARK 3 T13: -0.1064 T23: -0.0246 REMARK 3 L TENSOR REMARK 3 L11: 1.9405 L22: 1.2897 REMARK 3 L33: 1.0783 L12: 0.0733 REMARK 3 L13: 1.2618 L23: -0.2240 REMARK 3 S TENSOR REMARK 3 S11: -0.5483 S12: -0.4970 S13: 0.6348 REMARK 3 S21: 0.1680 S22: 0.0687 S23: -0.2080 REMARK 3 S31: -0.0789 S32: -0.2565 S33: 0.3971 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN Q REMARK 3 ORIGIN FOR THE GROUP (A): -26.2573 27.4345 -22.2070 REMARK 3 T TENSOR REMARK 3 T11: 0.6300 T22: 1.2882 REMARK 3 T33: 1.0553 T12: 0.2364 REMARK 3 T13: -0.0620 T23: 0.0466 REMARK 3 L TENSOR REMARK 3 L11: 2.0277 L22: 0.9255 REMARK 3 L33: 1.3018 L12: 2.0204 REMARK 3 L13: 1.3879 L23: 0.6140 REMARK 3 S TENSOR REMARK 3 S11: -0.4617 S12: 0.0257 S13: 0.8496 REMARK 3 S21: 0.0008 S22: 0.1282 S23: -0.1330 REMARK 3 S31: -0.0957 S32: -0.2133 S33: 0.1667 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A AND (RESSEQ 2:51 ) REMARK 3 SELECTION : CHAIN B AND (RESSEQ 2:51 ) REMARK 3 ATOM PAIRS NUMBER : 384 REMARK 3 RMSD : 0.006 REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: CHAIN A AND (RESSEQ 2:51 ) REMARK 3 SELECTION : CHAIN C AND (RESSEQ 2:51 ) REMARK 3 ATOM PAIRS NUMBER : 384 REMARK 3 RMSD : 0.005 REMARK 3 NCS OPERATOR : 3 REMARK 3 REFERENCE SELECTION: CHAIN A AND (RESSEQ 2:51 ) REMARK 3 SELECTION : CHAIN D AND (RESSEQ 2:51 ) REMARK 3 ATOM PAIRS NUMBER : 384 REMARK 3 RMSD : 0.007 REMARK 3 NCS OPERATOR : 4 REMARK 3 REFERENCE SELECTION: CHAIN A AND (RESSEQ 2:51 ) REMARK 3 SELECTION : CHAIN E AND (RESSEQ 2:51 ) REMARK 3 ATOM PAIRS NUMBER : 384 REMARK 3 RMSD : 0.005 REMARK 3 NCS OPERATOR : 5 REMARK 3 REFERENCE SELECTION: CHAIN A AND (RESSEQ 2:51 ) REMARK 3 SELECTION : CHAIN F AND (RESSEQ 2:51 ) REMARK 3 ATOM PAIRS NUMBER : 384 REMARK 3 RMSD : 0.006 REMARK 3 NCS OPERATOR : 6 REMARK 3 REFERENCE SELECTION: CHAIN A AND (RESSEQ 2:51 ) REMARK 3 SELECTION : CHAIN G AND (RESSEQ 2:51 ) REMARK 3 ATOM PAIRS NUMBER : 384 REMARK 3 RMSD : 0.004 REMARK 3 NCS OPERATOR : 7 REMARK 3 REFERENCE SELECTION: CHAIN A AND (RESSEQ 2:51 ) REMARK 3 SELECTION : CHAIN H AND (RESSEQ 2:51 ) REMARK 3 ATOM PAIRS NUMBER : 384 REMARK 3 RMSD : 0.006 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4QPQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1000086357. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 12.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.11587 REMARK 200 MONOCHROMATOR : UNKNOWN REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15891 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 1000.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 15.20 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.00 REMARK 200 R MERGE FOR SHELL (I) : 0.78800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS, PH 7.0 AND 17.5% PEG1000, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 108.92150 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 43.52850 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 43.52850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 163.38225 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 43.52850 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 43.52850 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 54.46075 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 43.52850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.52850 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 163.38225 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 43.52850 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.52850 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 54.46075 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 108.92150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: FOUR DIMERS BOUND TO DOUBLE STRANDED DNA REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 20580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -162.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H, P, Q REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 52 REMARK 465 GLN A 53 REMARK 465 MET A 54 REMARK 465 MET B 54 REMARK 465 MET C 54 REMARK 465 MET D 54 REMARK 465 ALA E 52 REMARK 465 GLN E 53 REMARK 465 MET E 54 REMARK 465 MET F 54 REMARK 465 ALA G 52 REMARK 465 GLN G 53 REMARK 465 MET G 54 REMARK 465 GLN H 53 REMARK 465 MET H 54 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 29 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 30 CG CD OE1 OE2 REMARK 470 LYS A 31 CG CD CE NZ REMARK 470 ARG B 29 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 30 CG CD OE1 OE2 REMARK 470 LYS B 31 CG CD CE NZ REMARK 470 ARG C 29 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 30 CG CD OE1 OE2 REMARK 470 LYS C 31 CG CD CE NZ REMARK 470 ARG D 29 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 30 CG CD OE1 OE2 REMARK 470 LYS D 31 CG CD CE NZ REMARK 470 ARG E 29 CG CD NE CZ NH1 NH2 REMARK 470 GLU E 30 CG CD OE1 OE2 REMARK 470 LYS E 31 CG CD CE NZ REMARK 470 ARG F 29 CG CD NE CZ NH1 NH2 REMARK 470 GLU F 30 CG CD OE1 OE2 REMARK 470 LYS F 31 CG CD CE NZ REMARK 470 ARG G 29 CG CD NE CZ NH1 NH2 REMARK 470 GLU G 30 CG CD OE1 OE2 REMARK 470 LYS G 31 CG CD CE NZ REMARK 470 ARG H 29 CG CD NE CZ NH1 NH2 REMARK 470 GLU H 30 CG CD OE1 OE2 REMARK 470 LYS H 31 CG CD CE NZ REMARK 470 DT P 8 C7 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 31 -4.51 69.02 REMARK 500 LYS B 31 -4.62 69.09 REMARK 500 LYS C 31 -4.57 69.11 REMARK 500 LYS D 31 -4.52 68.87 REMARK 500 LYS E 31 -4.57 69.11 REMARK 500 LYS F 31 -4.67 68.98 REMARK 500 LYS G 31 -4.54 68.96 REMARK 500 LYS H 31 -4.56 68.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4QPO RELATED DB: PDB DBREF 4QPQ A 2 54 UNP P10026 TRAM1_ECOLI 2 54 DBREF 4QPQ B 2 54 UNP P10026 TRAM1_ECOLI 2 54 DBREF 4QPQ C 2 54 UNP P10026 TRAM1_ECOLI 2 54 DBREF 4QPQ D 2 54 UNP P10026 TRAM1_ECOLI 2 54 DBREF 4QPQ E 2 54 UNP P10026 TRAM1_ECOLI 2 54 DBREF 4QPQ F 2 54 UNP P10026 TRAM1_ECOLI 2 54 DBREF 4QPQ G 2 54 UNP P10026 TRAM1_ECOLI 2 54 DBREF 4QPQ H 2 54 UNP P10026 TRAM1_ECOLI 2 54 DBREF 4QPQ P 1 28 PDB 4QPQ 4QPQ 1 28 DBREF 4QPQ Q 1 28 PDB 4QPQ 4QPQ 1 28 SEQRES 1 A 53 ALA LYS VAL ASN LEU TYR ILE SER ASN ASP ALA TYR GLU SEQRES 2 A 53 LYS ILE ASN ALA ILE ILE GLU LYS ARG ARG GLN GLU GLY SEQRES 3 A 53 ALA ARG GLU LYS ASP VAL SER PHE SER ALA THR ALA SER SEQRES 4 A 53 MET LEU LEU GLU LEU GLY LEU ARG VAL HIS GLU ALA GLN SEQRES 5 A 53 MET SEQRES 1 B 53 ALA LYS VAL ASN LEU TYR ILE SER ASN ASP ALA TYR GLU SEQRES 2 B 53 LYS ILE ASN ALA ILE ILE GLU LYS ARG ARG GLN GLU GLY SEQRES 3 B 53 ALA ARG GLU LYS ASP VAL SER PHE SER ALA THR ALA SER SEQRES 4 B 53 MET LEU LEU GLU LEU GLY LEU ARG VAL HIS GLU ALA GLN SEQRES 5 B 53 MET SEQRES 1 C 53 ALA LYS VAL ASN LEU TYR ILE SER ASN ASP ALA TYR GLU SEQRES 2 C 53 LYS ILE ASN ALA ILE ILE GLU LYS ARG ARG GLN GLU GLY SEQRES 3 C 53 ALA ARG GLU LYS ASP VAL SER PHE SER ALA THR ALA SER SEQRES 4 C 53 MET LEU LEU GLU LEU GLY LEU ARG VAL HIS GLU ALA GLN SEQRES 5 C 53 MET SEQRES 1 D 53 ALA LYS VAL ASN LEU TYR ILE SER ASN ASP ALA TYR GLU SEQRES 2 D 53 LYS ILE ASN ALA ILE ILE GLU LYS ARG ARG GLN GLU GLY SEQRES 3 D 53 ALA ARG GLU LYS ASP VAL SER PHE SER ALA THR ALA SER SEQRES 4 D 53 MET LEU LEU GLU LEU GLY LEU ARG VAL HIS GLU ALA GLN SEQRES 5 D 53 MET SEQRES 1 E 53 ALA LYS VAL ASN LEU TYR ILE SER ASN ASP ALA TYR GLU SEQRES 2 E 53 LYS ILE ASN ALA ILE ILE GLU LYS ARG ARG GLN GLU GLY SEQRES 3 E 53 ALA ARG GLU LYS ASP VAL SER PHE SER ALA THR ALA SER SEQRES 4 E 53 MET LEU LEU GLU LEU GLY LEU ARG VAL HIS GLU ALA GLN SEQRES 5 E 53 MET SEQRES 1 F 53 ALA LYS VAL ASN LEU TYR ILE SER ASN ASP ALA TYR GLU SEQRES 2 F 53 LYS ILE ASN ALA ILE ILE GLU LYS ARG ARG GLN GLU GLY SEQRES 3 F 53 ALA ARG GLU LYS ASP VAL SER PHE SER ALA THR ALA SER SEQRES 4 F 53 MET LEU LEU GLU LEU GLY LEU ARG VAL HIS GLU ALA GLN SEQRES 5 F 53 MET SEQRES 1 G 53 ALA LYS VAL ASN LEU TYR ILE SER ASN ASP ALA TYR GLU SEQRES 2 G 53 LYS ILE ASN ALA ILE ILE GLU LYS ARG ARG GLN GLU GLY SEQRES 3 G 53 ALA ARG GLU LYS ASP VAL SER PHE SER ALA THR ALA SER SEQRES 4 G 53 MET LEU LEU GLU LEU GLY LEU ARG VAL HIS GLU ALA GLN SEQRES 5 G 53 MET SEQRES 1 H 53 ALA LYS VAL ASN LEU TYR ILE SER ASN ASP ALA TYR GLU SEQRES 2 H 53 LYS ILE ASN ALA ILE ILE GLU LYS ARG ARG GLN GLU GLY SEQRES 3 H 53 ALA ARG GLU LYS ASP VAL SER PHE SER ALA THR ALA SER SEQRES 4 H 53 MET LEU LEU GLU LEU GLY LEU ARG VAL HIS GLU ALA GLN SEQRES 5 H 53 MET SEQRES 1 P 28 DA DT DA DC DC DG DC DT DA DG DG DG DG SEQRES 2 P 28 DC DG DC DT DG DC DT DA DG DC DG DG DT SEQRES 3 P 28 DG DC SEQRES 1 Q 28 DG DC DA DC DC DG DC DT DA DG DC DA DG SEQRES 2 Q 28 DC DG DC DC DC DC DT DA DG DC DG DG DT SEQRES 3 Q 28 DA DT HELIX 1 1 SER A 9 GLY A 27 1 19 HELIX 2 2 SER A 34 GLU A 51 1 18 HELIX 3 3 SER B 9 GLY B 27 1 19 HELIX 4 4 SER B 34 GLN B 53 1 20 HELIX 5 5 SER C 9 GLY C 27 1 19 HELIX 6 6 SER C 34 GLN C 53 1 20 HELIX 7 7 SER D 9 GLY D 27 1 19 HELIX 8 8 SER D 34 GLN D 53 1 20 HELIX 9 9 SER E 9 GLY E 27 1 19 HELIX 10 10 SER E 34 GLU E 51 1 18 HELIX 11 11 SER F 9 GLY F 27 1 19 HELIX 12 12 SER F 34 GLN F 53 1 20 HELIX 13 13 SER G 9 GLY G 27 1 19 HELIX 14 14 SER G 34 GLU G 51 1 18 HELIX 15 15 SER H 9 GLY H 27 1 19 HELIX 16 16 SER H 34 ALA H 52 1 19 SHEET 1 A 2 LYS A 3 TYR A 7 0 SHEET 2 A 2 LYS D 3 TYR D 7 -1 O LEU D 6 N VAL A 4 SHEET 1 B 2 LYS B 3 TYR B 7 0 SHEET 2 B 2 LYS C 3 TYR C 7 -1 O LEU C 6 N VAL B 4 SHEET 1 C 2 LYS E 3 TYR E 7 0 SHEET 2 C 2 LYS H 3 TYR H 7 -1 O LEU H 6 N VAL E 4 SHEET 1 D 2 LYS F 3 TYR F 7 0 SHEET 2 D 2 LYS G 3 TYR G 7 -1 O VAL G 4 N LEU F 6 CISPEP 1 GLY A 27 ALA A 28 0 -6.11 CISPEP 2 GLY B 27 ALA B 28 0 -6.01 CISPEP 3 GLY C 27 ALA C 28 0 -6.11 CISPEP 4 GLY D 27 ALA D 28 0 -5.98 CISPEP 5 GLY E 27 ALA E 28 0 -6.00 CISPEP 6 GLY F 27 ALA F 28 0 -5.93 CISPEP 7 GLY G 27 ALA G 28 0 -6.03 CISPEP 8 GLY H 27 ALA H 28 0 -6.18 CRYST1 87.057 87.057 217.843 90.00 90.00 90.00 P 43 21 2 64 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011487 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011487 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004590 0.00000 MTRIX1 1 -0.955814 -0.078361 0.283336 -62.20520 1 MTRIX2 1 0.225301 -0.814385 0.534806 65.47040 1 MTRIX3 1 0.188837 0.575010 0.796055 -13.37820 1 MTRIX1 2 0.993804 0.111114 -0.002758 -40.59140 1 MTRIX2 2 -0.102919 0.929310 0.354671 11.71650 1 MTRIX3 2 0.041971 -0.352190 0.934987 10.75680 1 MTRIX1 3 -0.961199 0.118068 0.249314 -105.35900 1 MTRIX2 3 0.131972 -0.596828 0.791441 69.19930 1 MTRIX3 3 0.242241 0.793635 0.558089 -18.58900 1 MTRIX1 4 -0.973357 0.224862 0.044863 -92.42330 1 MTRIX2 4 0.211116 0.955220 -0.207329 5.92663 1 MTRIX3 4 -0.089475 -0.192334 -0.977242 -40.78900 1 MTRIX1 5 0.952450 0.179377 -0.246299 -69.21810 1 MTRIX2 5 -0.125930 -0.504333 -0.854277 21.12620 1 MTRIX3 5 -0.277454 0.844673 -0.457763 -54.32700 1 MTRIX1 6 -0.999002 -0.042894 0.012418 -49.56080 1 MTRIX2 6 -0.041197 0.992585 0.114362 4.55650 1 MTRIX3 6 -0.017231 0.113736 -0.993362 -48.91770 1 MTRIX1 7 0.940784 -0.141080 -0.308256 -26.11530 1 MTRIX2 7 -0.316061 -0.693855 -0.647048 21.42290 1 MTRIX3 7 -0.122600 0.706160 -0.697358 -59.28010 1