PDB Short entry for 4QZT HEADER PROTEIN BINDING 28-JUL-14 4QZT TITLE CRYSTAL STRUCTURE OF WILD TYPE HUMAN CELLULAR RETINOL BINDING PROTEIN TITLE 2 II (HCRBPII) BOUND TO RETINOL AT 7 KEV BEAM ENERGY COMPND MOL_ID: 1; COMPND 2 MOLECULE: RETINOL-BINDING PROTEIN 2; COMPND 3 CHAIN: A, C, B, D; COMPND 4 SYNONYM: CELLULAR RETINOL-BINDING PROTEIN II, CRBP-II; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RBP2, CRBP2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET17B KEYWDS RETINOL, HUMAN CELLULAR RETINOL BINDING PROTEIN II, INTRACELLULAR KEYWDS 2 LIPID BINDING PROTEIN, X-RAY FLUX, X-RAY DAMAGE, RETINAL, RETINOID KEYWDS 3 CHAPERONES, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR Z.ASSAR,J.H.GEIGER REVDAT 3 31-DEC-14 4QZT 1 JRNL REVDAT 2 24-DEC-14 4QZT 1 JRNL REVDAT 1 10-DEC-14 4QZT 0 JRNL AUTH Z.NOSSONI,Z.ASSAR,I.YAPICI,M.NOSRATI,W.WANG,T.BERBASOVA, JRNL AUTH 2 C.VASILEIOU,B.BORHAN,J.GEIGER JRNL TITL STRUCTURES OF HOLO WILD-TYPE HUMAN CELLULAR RETINOL-BINDING JRNL TITL 2 PROTEIN II (HCRBPII) BOUND TO RETINOL AND RETINAL. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 70 3226 2014 JRNL REFN ISSN 0907-4449 JRNL PMID 25478840 JRNL DOI 10.1107/S1399004714023839 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.79 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.030 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.4 REMARK 3 NUMBER OF REFLECTIONS : 34646 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.770 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.7916 - 4.5650 0.95 2392 147 0.1746 0.2329 REMARK 3 2 4.5650 - 3.6254 0.97 2427 150 0.1423 0.1833 REMARK 3 3 3.6254 - 3.1677 0.96 2449 154 0.1602 0.2100 REMARK 3 4 3.1677 - 2.8784 0.95 2394 147 0.1979 0.2678 REMARK 3 5 2.8784 - 2.6722 0.94 2386 146 0.2062 0.2945 REMARK 3 6 2.6722 - 2.5147 0.94 2363 141 0.2057 0.2931 REMARK 3 7 2.5147 - 2.3889 0.93 2358 149 0.2077 0.2738 REMARK 3 8 2.3889 - 2.2849 0.92 2300 137 0.1982 0.2896 REMARK 3 9 2.2849 - 2.1970 0.91 2323 150 0.1918 0.2840 REMARK 3 10 2.1970 - 2.1212 0.91 2283 136 0.1918 0.2793 REMARK 3 11 2.1212 - 2.0549 0.90 2285 137 0.1962 0.2750 REMARK 3 12 2.0549 - 1.9962 0.90 2252 137 0.1895 0.2754 REMARK 3 13 1.9962 - 1.9436 0.89 2244 142 0.2011 0.2457 REMARK 3 14 1.9436 - 1.8962 0.86 2190 127 0.2230 0.3282 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.300 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4550 REMARK 3 ANGLE : 1.079 6129 REMARK 3 CHIRALITY : 0.043 650 REMARK 3 PLANARITY : 0.004 797 REMARK 3 DIHEDRAL : 17.307 1712 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: all REMARK 3 ORIGIN FOR THE GROUP (A): 21.6411 5.0451 22.7630 REMARK 3 T TENSOR REMARK 3 T11: 0.1162 T22: 0.1598 REMARK 3 T33: 0.1546 T12: 0.0010 REMARK 3 T13: 0.0086 T23: -0.0033 REMARK 3 L TENSOR REMARK 3 L11: -0.0876 L22: 0.1935 REMARK 3 L33: 0.2935 L12: -0.0223 REMARK 3 L13: 0.1039 L23: -0.0221 REMARK 3 S TENSOR REMARK 3 S11: -0.0139 S12: 0.0315 S13: -0.0112 REMARK 3 S21: 0.0163 S22: 0.0423 S23: -0.0290 REMARK 3 S31: -0.0129 S32: 0.0237 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4QZT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JUL-14. REMARK 100 THE RCSB ID CODE IS RCSB086720. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 76284 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.890 REMARK 200 RESOLUTION RANGE LOW (A) : 29.790 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.4 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.9500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.32500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 6.230 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2RCT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 4000 (40%), 0.1M SODIUM REMARK 280 ACETATE PH 4.5, AMMONIUM ACETATE 0.1M, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 318 O HOH B 348 1.99 REMARK 500 OD1 ASP C 47 O HOH C 366 2.04 REMARK 500 OE1 GLU A 111 O HOH A 338 2.10 REMARK 500 O HOH B 342 O HOH B 376 2.12 REMARK 500 O HOH D 211 O HOH D 233 2.13 REMARK 500 O HOH D 229 O HOH D 254 2.14 REMARK 500 OE2 GLU C 111 O HOH C 336 2.14 REMARK 500 O HOH B 344 O HOH B 353 2.15 REMARK 500 O ACT B 201 O HOH B 355 2.15 REMARK 500 OD2 ASP B 91 O HOH B 381 2.17 REMARK 500 O HOH C 301 O HOH C 348 2.18 REMARK 500 OE2 GLU C 118 O HOH C 347 2.18 REMARK 500 O HOH B 316 O HOH B 359 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH C 361 O HOH B 372 1445 1.98 REMARK 500 OE2 GLU B 111 O HOH C 367 1665 2.00 REMARK 500 O HOH C 362 O HOH B 371 1445 2.02 REMARK 500 O HOH A 353 O HOH D 246 1445 2.05 REMARK 500 O HOH C 355 O HOH D 232 1445 2.12 REMARK 500 O HOH A 360 O HOH B 372 1444 2.12 REMARK 500 OH TYR A 116 O HOH D 252 1445 2.13 REMARK 500 NZ LYS A 50 O HOH D 264 1455 2.13 REMARK 500 O HOH A 339 O HOH D 246 1445 2.14 REMARK 500 O HOH C 332 O HOH B 363 1455 2.14 REMARK 500 OD1 ASP B 91 O HOH A 359 1666 2.15 REMARK 500 O HOH C 378 O HOH B 364 1455 2.15 REMARK 500 O HOH C 351 O HOH B 382 1545 2.16 REMARK 500 OD1 ASP A 113 O HOH D 251 1445 2.16 REMARK 500 OD1 ASP C 113 O HOH B 322 1455 2.16 REMARK 500 O HOH C 353 O HOH B 358 1445 2.16 REMARK 500 O HOH C 369 O HOH B 360 1545 2.17 REMARK 500 OD1 ASP C 45 O HOH B 375 1455 2.17 REMARK 500 OD1 ASP A 91 O HOH D 259 1445 2.18 REMARK 500 O HOH A 354 O HOH D 259 1445 2.18 REMARK 500 O HOH C 358 O HOH B 382 1545 2.19 REMARK 500 OD1 ASP B 24 O HOH C 357 1655 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 77 -105.80 -104.89 REMARK 500 THR C 74 47.17 -82.07 REMARK 500 SER C 76 -21.04 84.81 REMARK 500 LEU C 77 -109.85 -106.12 REMARK 500 LYS C 132 113.35 98.14 REMARK 500 ASN B 13 87.18 -154.87 REMARK 500 LYS B 75 126.67 -39.49 REMARK 500 SER B 76 7.46 58.21 REMARK 500 LEU B 77 -98.58 -94.48 REMARK 500 ALA D 33 -39.75 -171.42 REMARK 500 ARG D 35 -96.26 -121.24 REMARK 500 LEU D 36 119.18 55.21 REMARK 500 PHE D 57 -95.48 -84.44 REMARK 500 SER D 76 -22.38 46.16 REMARK 500 LEU D 77 -77.01 -69.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 356 DISTANCE = 5.06 ANGSTROMS REMARK 525 HOH A 359 DISTANCE = 9.00 ANGSTROMS REMARK 525 HOH A 360 DISTANCE = 9.25 ANGSTROMS REMARK 525 HOH B 371 DISTANCE = 6.13 ANGSTROMS REMARK 525 HOH B 373 DISTANCE = 11.36 ANGSTROMS REMARK 525 HOH B 374 DISTANCE = 7.07 ANGSTROMS REMARK 525 HOH B 380 DISTANCE = 5.28 ANGSTROMS REMARK 525 HOH B 382 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH B 386 DISTANCE = 5.15 ANGSTROMS REMARK 525 HOH C 370 DISTANCE = 5.39 ANGSTROMS REMARK 525 HOH D 238 DISTANCE = 5.36 ANGSTROMS REMARK 525 HOH D 245 DISTANCE = 5.61 ANGSTROMS REMARK 525 HOH D 246 DISTANCE = 6.75 ANGSTROMS REMARK 525 HOH D 247 DISTANCE = 5.18 ANGSTROMS REMARK 525 HOH D 256 DISTANCE = 7.37 ANGSTROMS REMARK 525 HOH D 262 DISTANCE = 5.04 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RTL A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RTL C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT C 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4EDE RELATED DB: PDB REMARK 900 RELATED ID: 4EEJ RELATED DB: PDB REMARK 900 RELATED ID: 4EFG RELATED DB: PDB REMARK 900 RELATED ID: 2RCT RELATED DB: PDB REMARK 900 RELATED ID: 2RCQ RELATED DB: PDB REMARK 900 RELATED ID: 4QZU RELATED DB: PDB DBREF 4QZT A 1 133 UNP P50120 RET2_HUMAN 2 134 DBREF 4QZT C 1 133 UNP P50120 RET2_HUMAN 2 134 DBREF 4QZT B 1 133 UNP P50120 RET2_HUMAN 2 134 DBREF 4QZT D 1 133 UNP P50120 RET2_HUMAN 2 134 SEQRES 1 A 133 THR ARG ASP GLN ASN GLY THR TRP GLU MET GLU SER ASN SEQRES 2 A 133 GLU ASN PHE GLU GLY TYR MET LYS ALA LEU ASP ILE ASP SEQRES 3 A 133 PHE ALA THR ARG LYS ILE ALA VAL ARG LEU THR GLN THR SEQRES 4 A 133 LYS VAL ILE ASP GLN ASP GLY ASP ASN PHE LYS THR LYS SEQRES 5 A 133 THR THR SER THR PHE ARG ASN TYR ASP VAL ASP PHE THR SEQRES 6 A 133 VAL GLY VAL GLU PHE ASP GLU TYR THR LYS SER LEU ASP SEQRES 7 A 133 ASN ARG HIS VAL LYS ALA LEU VAL THR TRP GLU GLY ASP SEQRES 8 A 133 VAL LEU VAL CYS VAL GLN LYS GLY GLU LYS GLU ASN ARG SEQRES 9 A 133 GLY TRP LYS GLN TRP ILE GLU GLY ASP LYS LEU TYR LEU SEQRES 10 A 133 GLU LEU THR CYS GLY ASP GLN VAL CYS ARG GLN VAL PHE SEQRES 11 A 133 LYS LYS LYS SEQRES 1 C 133 THR ARG ASP GLN ASN GLY THR TRP GLU MET GLU SER ASN SEQRES 2 C 133 GLU ASN PHE GLU GLY TYR MET LYS ALA LEU ASP ILE ASP SEQRES 3 C 133 PHE ALA THR ARG LYS ILE ALA VAL ARG LEU THR GLN THR SEQRES 4 C 133 LYS VAL ILE ASP GLN ASP GLY ASP ASN PHE LYS THR LYS SEQRES 5 C 133 THR THR SER THR PHE ARG ASN TYR ASP VAL ASP PHE THR SEQRES 6 C 133 VAL GLY VAL GLU PHE ASP GLU TYR THR LYS SER LEU ASP SEQRES 7 C 133 ASN ARG HIS VAL LYS ALA LEU VAL THR TRP GLU GLY ASP SEQRES 8 C 133 VAL LEU VAL CYS VAL GLN LYS GLY GLU LYS GLU ASN ARG SEQRES 9 C 133 GLY TRP LYS GLN TRP ILE GLU GLY ASP LYS LEU TYR LEU SEQRES 10 C 133 GLU LEU THR CYS GLY ASP GLN VAL CYS ARG GLN VAL PHE SEQRES 11 C 133 LYS LYS LYS SEQRES 1 B 133 THR ARG ASP GLN ASN GLY THR TRP GLU MET GLU SER ASN SEQRES 2 B 133 GLU ASN PHE GLU GLY TYR MET LYS ALA LEU ASP ILE ASP SEQRES 3 B 133 PHE ALA THR ARG LYS ILE ALA VAL ARG LEU THR GLN THR SEQRES 4 B 133 LYS VAL ILE ASP GLN ASP GLY ASP ASN PHE LYS THR LYS SEQRES 5 B 133 THR THR SER THR PHE ARG ASN TYR ASP VAL ASP PHE THR SEQRES 6 B 133 VAL GLY VAL GLU PHE ASP GLU TYR THR LYS SER LEU ASP SEQRES 7 B 133 ASN ARG HIS VAL LYS ALA LEU VAL THR TRP GLU GLY ASP SEQRES 8 B 133 VAL LEU VAL CYS VAL GLN LYS GLY GLU LYS GLU ASN ARG SEQRES 9 B 133 GLY TRP LYS GLN TRP ILE GLU GLY ASP LYS LEU TYR LEU SEQRES 10 B 133 GLU LEU THR CYS GLY ASP GLN VAL CYS ARG GLN VAL PHE SEQRES 11 B 133 LYS LYS LYS SEQRES 1 D 133 THR ARG ASP GLN ASN GLY THR TRP GLU MET GLU SER ASN SEQRES 2 D 133 GLU ASN PHE GLU GLY TYR MET LYS ALA LEU ASP ILE ASP SEQRES 3 D 133 PHE ALA THR ARG LYS ILE ALA VAL ARG LEU THR GLN THR SEQRES 4 D 133 LYS VAL ILE ASP GLN ASP GLY ASP ASN PHE LYS THR LYS SEQRES 5 D 133 THR THR SER THR PHE ARG ASN TYR ASP VAL ASP PHE THR SEQRES 6 D 133 VAL GLY VAL GLU PHE ASP GLU TYR THR LYS SER LEU ASP SEQRES 7 D 133 ASN ARG HIS VAL LYS ALA LEU VAL THR TRP GLU GLY ASP SEQRES 8 D 133 VAL LEU VAL CYS VAL GLN LYS GLY GLU LYS GLU ASN ARG SEQRES 9 D 133 GLY TRP LYS GLN TRP ILE GLU GLY ASP LYS LEU TYR LEU SEQRES 10 D 133 GLU LEU THR CYS GLY ASP GLN VAL CYS ARG GLN VAL PHE SEQRES 11 D 133 LYS LYS LYS HET RTL A 201 22 HET ACT A 202 4 HET RTL C 201 21 HET ACT C 202 4 HET ACT B 201 4 HETNAM RTL RETINOL HETNAM ACT ACETATE ION FORMUL 5 RTL 2(C20 H30 O) FORMUL 6 ACT 3(C2 H3 O2 1-) FORMUL 10 HOH *292(H2 O) HELIX 1 1 ASN A 15 LEU A 23 1 9 HELIX 2 2 ASP A 26 VAL A 34 1 9 HELIX 3 3 ASN C 15 LEU C 23 1 9 HELIX 4 4 ASP C 26 VAL C 34 1 9 HELIX 5 5 ASN B 15 LEU B 23 1 9 HELIX 6 6 ASP B 26 VAL B 34 1 9 HELIX 7 7 ASN D 15 LEU D 23 1 9 HELIX 8 8 ASP D 26 ILE D 32 1 7 SHEET 1 A10 ASN A 59 THR A 65 0 SHEET 2 A10 ASN A 48 THR A 54 -1 N PHE A 49 O PHE A 64 SHEET 3 A10 THR A 39 ASP A 45 -1 N THR A 39 O THR A 54 SHEET 4 A10 GLY A 6 GLU A 14 -1 N TRP A 8 O LYS A 40 SHEET 5 A10 GLN A 124 LYS A 132 -1 O VAL A 129 N GLU A 11 SHEET 6 A10 LYS A 114 CYS A 121 -1 N LEU A 117 O GLN A 128 SHEET 7 A10 GLY A 105 GLU A 111 -1 N TRP A 109 O TYR A 116 SHEET 8 A10 VAL A 92 LYS A 98 -1 N CYS A 95 O TRP A 106 SHEET 9 A10 HIS A 81 GLU A 89 -1 N THR A 87 O VAL A 94 SHEET 10 A10 PHE A 70 TYR A 73 -1 N GLU A 72 O VAL A 82 SHEET 1 B10 ASN C 59 THR C 65 0 SHEET 2 B10 ASN C 48 THR C 54 -1 N PHE C 49 O PHE C 64 SHEET 3 B10 THR C 39 ASP C 45 -1 N ASP C 43 O LYS C 50 SHEET 4 B10 GLY C 6 GLU C 14 -1 N TRP C 8 O LYS C 40 SHEET 5 B10 GLN C 124 PHE C 130 -1 O VAL C 129 N GLU C 11 SHEET 6 B10 LYS C 114 CYS C 121 -1 N LEU C 117 O GLN C 128 SHEET 7 B10 GLY C 105 GLU C 111 -1 N LYS C 107 O GLU C 118 SHEET 8 B10 VAL C 92 LYS C 98 -1 N CYS C 95 O TRP C 106 SHEET 9 B10 HIS C 81 GLU C 89 -1 N LYS C 83 O LYS C 98 SHEET 10 B10 PHE C 70 TYR C 73 -1 N PHE C 70 O ALA C 84 SHEET 1 C10 TYR B 60 THR B 65 0 SHEET 2 C10 ASN B 48 THR B 54 -1 N PHE B 49 O PHE B 64 SHEET 3 C10 THR B 39 ASP B 45 -1 N THR B 39 O THR B 54 SHEET 4 C10 GLY B 6 GLU B 14 -1 N TRP B 8 O LYS B 40 SHEET 5 C10 GLN B 124 LYS B 132 -1 O VAL B 129 N GLU B 11 SHEET 6 C10 LYS B 114 CYS B 121 -1 N LEU B 117 O GLN B 128 SHEET 7 C10 GLY B 105 GLU B 111 -1 N TRP B 109 O TYR B 116 SHEET 8 C10 VAL B 92 LYS B 98 -1 N CYS B 95 O TRP B 106 SHEET 9 C10 HIS B 81 GLU B 89 -1 N THR B 87 O VAL B 94 SHEET 10 C10 PHE B 70 TYR B 73 -1 N GLU B 72 O VAL B 82 SHEET 1 D10 ASN D 59 THR D 65 0 SHEET 2 D10 ASN D 48 THR D 54 -1 N PHE D 49 O PHE D 64 SHEET 3 D10 THR D 39 ASP D 45 -1 N VAL D 41 O LYS D 52 SHEET 4 D10 GLY D 6 GLU D 14 -1 N TRP D 8 O LYS D 40 SHEET 5 D10 GLN D 124 LYS D 132 -1 O ARG D 127 N GLU D 14 SHEET 6 D10 LYS D 114 CYS D 121 -1 N CYS D 121 O GLN D 124 SHEET 7 D10 GLY D 105 GLU D 111 -1 N LYS D 107 O GLU D 118 SHEET 8 D10 VAL D 92 GLY D 99 -1 N CYS D 95 O TRP D 106 SHEET 9 D10 HIS D 81 GLU D 89 -1 N THR D 87 O VAL D 94 SHEET 10 D10 PHE D 70 TYR D 73 -1 N GLU D 72 O VAL D 82 SITE 1 AC1 10 PHE A 16 LYS A 40 THR A 51 SER A 76 SITE 2 AC1 10 LEU A 77 TRP A 106 GLN A 108 LEU A 117 SITE 3 AC1 10 LEU A 119 ACT A 202 SITE 1 AC2 7 TYR A 60 GLU A 72 THR A 74 LEU A 77 SITE 2 AC2 7 GLN A 97 RTL A 201 HOH A 334 SITE 1 AC3 11 PHE C 16 ALA C 33 GLN C 38 LYS C 40 SITE 2 AC3 11 SER C 76 LEU C 77 TRP C 106 GLN C 108 SITE 3 AC3 11 LEU C 119 ACT C 202 HOH C 345 SITE 1 AC4 5 GLU C 72 GLN C 97 TRP C 106 RTL C 201 SITE 2 AC4 5 HOH C 314 SITE 1 AC5 6 TYR B 60 GLU B 72 LEU B 77 GLN B 97 SITE 2 AC5 6 HOH B 302 HOH B 355 CRYST1 36.406 54.179 68.444 107.72 97.19 103.59 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027468 0.006640 0.006143 0.00000 SCALE2 0.000000 0.018989 0.007005 0.00000 SCALE3 0.000000 0.000000 0.015696 0.00000