PDB Short entry for 4RG1 HEADER TRANSFERASE 29-SEP-14 4RG1 TITLE METHYLTRANSFERASE DOMAIN OF C9ORF114 COMPND MOL_ID: 1; COMPND 2 MOLECULE: C9ORF114; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: METHYLTRANSFERASE DOMAIN (UNP RESIDUES 64-376); COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: C9ORF114; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) CODON PLUS RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28-MHL KEYWDS C9ORF114, METHYLTRANSFERASE, SAH, STRUCTURAL GENOMICS, STRUCTURAL KEYWDS 2 GENOMICS CONSORTIUM, SGC, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.DONG,H.ZENG,J.R.WALKER,Y.LI,C.BOUNTRA,C.H.ARROWSMITH,A.M.EDWARDS, AUTHOR 2 P.J.BROWN,H.WU,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 3 20-SEP-23 4RG1 1 REMARK SEQADV REVDAT 2 22-NOV-17 4RG1 1 REMARK REVDAT 1 15-OCT-14 4RG1 0 JRNL AUTH H.ZENG,A.DONG,J.R.WALKER,Y.LI,C.BOUNTRA,C.H.ARROWSMITH, JRNL AUTH 2 A.M.EDWARDS,P.J.BROWN,H.WU JRNL TITL THE CRYSTAL STRUCTURE OF HUMAN C9ORF114 IN COMPLEX WITH JRNL TITL 2 S-ADENOSYL-HOMOCYSTEINE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 61911 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.400 REMARK 3 FREE R VALUE TEST SET COUNT : 888 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.86 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.91 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4503 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.85 REMARK 3 BIN R VALUE (WORKING SET) : 0.2530 REMARK 3 BIN FREE R VALUE SET COUNT : 67 REMARK 3 BIN FREE R VALUE : 0.2350 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4235 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 112 REMARK 3 SOLVENT ATOMS : 588 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.85000 REMARK 3 B22 (A**2) : 2.30000 REMARK 3 B33 (A**2) : -0.44000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.115 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.114 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.081 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.747 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4786 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4520 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6531 ; 1.397 ; 1.994 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10392 ; 0.797 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 631 ; 5.376 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 207 ;33.794 ;23.623 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 724 ;11.664 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 37 ;14.887 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 740 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5505 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1086 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2420 ; 1.775 ; 2.442 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2419 ; 1.770 ; 2.442 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3028 ; 2.843 ; 3.635 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4RG1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1000087300. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-AUG-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97915 REMARK 200 MONOCHROMATOR : ROSENBAUM-ROCK HIGH-RESOLUTION REMARK 200 DOUBLE-CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64378 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.860 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.400 REMARK 200 R MERGE (I) : 0.09900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 24.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.86 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 8.20 REMARK 200 R MERGE FOR SHELL (I) : 0.96200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: PDB ENTRY 1K3R REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 28% PEG3350, 0.2 M DIAMMONIUM REMARK 280 TARTRATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 63.75450 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.90800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 63.75450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.90800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 596 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 64 REMARK 465 GLU A 65 REMARK 465 LYS A 66 REMARK 465 GLU A 67 REMARK 465 ASP A 68 REMARK 465 GLY A 119 REMARK 465 GLN A 120 REMARK 465 ASP A 121 REMARK 465 ALA A 122 REMARK 465 LYS A 123 REMARK 465 THR A 124 REMARK 465 VAL A 125 REMARK 465 GLU A 126 REMARK 465 GLY A 127 REMARK 465 GLU A 128 REMARK 465 PHE A 129 REMARK 465 THR A 130 REMARK 465 GLY A 131 REMARK 465 VAL A 132 REMARK 465 GLY A 133 REMARK 465 LYS A 134 REMARK 465 LYS A 135 REMARK 465 GLN A 164 REMARK 465 ASP A 165 REMARK 465 HIS A 236 REMARK 465 PRO A 237 REMARK 465 HIS A 375 REMARK 465 THR A 376 REMARK 465 ALA B 64 REMARK 465 GLU B 65 REMARK 465 LYS B 66 REMARK 465 GLU B 67 REMARK 465 ASP B 68 REMARK 465 GLN B 120 REMARK 465 ASP B 121 REMARK 465 ALA B 122 REMARK 465 LYS B 123 REMARK 465 THR B 124 REMARK 465 VAL B 125 REMARK 465 GLU B 126 REMARK 465 GLY B 127 REMARK 465 GLU B 128 REMARK 465 PHE B 129 REMARK 465 THR B 130 REMARK 465 GLY B 131 REMARK 465 VAL B 132 REMARK 465 GLY B 133 REMARK 465 LYS B 134 REMARK 465 LYS B 135 REMARK 465 GLN B 234 REMARK 465 GLN B 235 REMARK 465 HIS B 236 REMARK 465 PRO B 237 REMARK 465 ASP B 238 REMARK 465 CYS B 239 REMARK 465 LYS B 240 REMARK 465 THR B 241 REMARK 465 HIS B 375 REMARK 465 THR B 376 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 69 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 118 CD OE1 OE2 REMARK 470 GLN A 137 CG CD OE1 NE2 REMARK 470 ARG A 144 NE CZ NH1 NH2 REMARK 470 LYS A 162 CG CD CE NZ REMARK 470 HIS A 163 CG ND1 CD2 CE1 NE2 REMARK 470 GLN A 167 CG CD OE1 NE2 REMARK 470 ARG A 182 CD NE CZ NH1 NH2 REMARK 470 GLU A 185 CG CD OE1 OE2 REMARK 470 GLU A 186 CD OE1 OE2 REMARK 470 LYS A 212 CD CE NZ REMARK 470 GLN A 233 CG CD OE1 NE2 REMARK 470 GLN A 234 CG CD OE1 NE2 REMARK 470 ASP A 238 CG OD1 OD2 REMARK 470 LYS A 240 CG CD CE NZ REMARK 470 LYS A 245 CD CE NZ REMARK 470 GLN A 280 CG CD OE1 NE2 REMARK 470 ASP A 281 CG OD1 OD2 REMARK 470 ARG A 374 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 69 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 118 CD OE1 OE2 REMARK 470 GLN B 137 CG CD OE1 NE2 REMARK 470 LYS B 157 CE NZ REMARK 470 LYS B 162 CG CD CE NZ REMARK 470 GLN B 164 CG CD OE1 NE2 REMARK 470 ARG B 182 CD NE CZ NH1 NH2 REMARK 470 GLU B 186 CD OE1 OE2 REMARK 470 LYS B 212 CD CE NZ REMARK 470 GLN B 233 CG CD OE1 NE2 REMARK 470 GLN B 280 CD OE1 NE2 REMARK 470 ASP B 281 CG OD1 OD2 REMARK 470 GLU B 328 CG CD OE1 OE2 REMARK 470 ARG B 374 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O1 PGO B 402 O HOH B 817 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 162 -177.58 66.50 REMARK 500 PHE A 168 36.56 -88.23 REMARK 500 HIS A 180 53.10 -102.08 REMARK 500 PRO A 198 113.86 -37.23 REMARK 500 SER A 290 146.62 -170.12 REMARK 500 ASN A 326 -15.75 -48.56 REMARK 500 GLU A 331 173.29 173.26 REMARK 500 HIS B 180 62.22 -104.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 15P A 402 REMARK 610 15P A 403 REMARK 610 15P B 403 REMARK 610 15P B 404 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAH A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 15P A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 15P A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAH B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGO B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 15P B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 15P B 404 DBREF 4RG1 A 64 376 UNP Q5T280 CI114_HUMAN 64 376 DBREF 4RG1 B 64 376 UNP Q5T280 CI114_HUMAN 64 376 SEQADV 4RG1 THR A 369 UNP Q5T280 ILE 369 CONFLICT SEQADV 4RG1 THR B 369 UNP Q5T280 ILE 369 CONFLICT SEQRES 1 A 313 ALA GLU LYS GLU ASP ARG GLY ARG PRO TYR THR LEU SER SEQRES 2 A 313 VAL ALA LEU PRO GLY SER ILE LEU ASP ASN ALA GLN SER SEQRES 3 A 313 PRO GLU LEU ARG THR TYR LEU ALA GLY GLN ILE ALA ARG SEQRES 4 A 313 ALA CYS ALA ILE PHE CYS VAL ASP GLU ILE VAL VAL PHE SEQRES 5 A 313 ASP GLU GLU GLY GLN ASP ALA LYS THR VAL GLU GLY GLU SEQRES 6 A 313 PHE THR GLY VAL GLY LYS LYS GLY GLN ALA CYS VAL GLN SEQRES 7 A 313 LEU ALA ARG ILE LEU GLN TYR LEU GLU CYS PRO GLN TYR SEQRES 8 A 313 LEU ARG LYS ALA PHE PHE PRO LYS HIS GLN ASP LEU GLN SEQRES 9 A 313 PHE ALA GLY LEU LEU ASN PRO LEU ASP SER PRO HIS HIS SEQRES 10 A 313 MET ARG GLN ASP GLU GLU SER GLU PHE ARG GLU GLY ILE SEQRES 11 A 313 VAL VAL ASP ARG PRO THR ARG PRO GLY HIS GLY SER PHE SEQRES 12 A 313 VAL ASN CYS GLY MET LYS LYS GLU VAL LYS ILE ASP LYS SEQRES 13 A 313 ASN LEU GLU PRO GLY LEU ARG VAL THR VAL ARG LEU ASN SEQRES 14 A 313 GLN GLN GLN HIS PRO ASP CYS LYS THR TYR HIS GLY LYS SEQRES 15 A 313 VAL VAL SER SER GLN ASP PRO ARG THR LYS ALA GLY LEU SEQRES 16 A 313 TYR TRP GLY TYR THR VAL ARG LEU ALA SER CYS LEU SER SEQRES 17 A 313 ALA VAL PHE ALA GLU ALA PRO PHE GLN ASP GLY TYR ASP SEQRES 18 A 313 LEU THR ILE GLY THR SER GLU ARG GLY SER ASP VAL ALA SEQRES 19 A 313 SER ALA GLN LEU PRO ASN PHE ARG HIS ALA LEU VAL VAL SEQRES 20 A 313 PHE GLY GLY LEU GLN GLY LEU GLU ALA GLY ALA ASP ALA SEQRES 21 A 313 ASP PRO ASN LEU GLU VAL ALA GLU PRO SER VAL LEU PHE SEQRES 22 A 313 ASP LEU TYR VAL ASN THR CYS PRO GLY GLN GLY SER ARG SEQRES 23 A 313 THR ILE ARG THR GLU GLU ALA ILE LEU ILE SER LEU ALA SEQRES 24 A 313 ALA LEU GLN PRO GLY LEU THR GLN ALA GLY ALA ARG HIS SEQRES 25 A 313 THR SEQRES 1 B 313 ALA GLU LYS GLU ASP ARG GLY ARG PRO TYR THR LEU SER SEQRES 2 B 313 VAL ALA LEU PRO GLY SER ILE LEU ASP ASN ALA GLN SER SEQRES 3 B 313 PRO GLU LEU ARG THR TYR LEU ALA GLY GLN ILE ALA ARG SEQRES 4 B 313 ALA CYS ALA ILE PHE CYS VAL ASP GLU ILE VAL VAL PHE SEQRES 5 B 313 ASP GLU GLU GLY GLN ASP ALA LYS THR VAL GLU GLY GLU SEQRES 6 B 313 PHE THR GLY VAL GLY LYS LYS GLY GLN ALA CYS VAL GLN SEQRES 7 B 313 LEU ALA ARG ILE LEU GLN TYR LEU GLU CYS PRO GLN TYR SEQRES 8 B 313 LEU ARG LYS ALA PHE PHE PRO LYS HIS GLN ASP LEU GLN SEQRES 9 B 313 PHE ALA GLY LEU LEU ASN PRO LEU ASP SER PRO HIS HIS SEQRES 10 B 313 MET ARG GLN ASP GLU GLU SER GLU PHE ARG GLU GLY ILE SEQRES 11 B 313 VAL VAL ASP ARG PRO THR ARG PRO GLY HIS GLY SER PHE SEQRES 12 B 313 VAL ASN CYS GLY MET LYS LYS GLU VAL LYS ILE ASP LYS SEQRES 13 B 313 ASN LEU GLU PRO GLY LEU ARG VAL THR VAL ARG LEU ASN SEQRES 14 B 313 GLN GLN GLN HIS PRO ASP CYS LYS THR TYR HIS GLY LYS SEQRES 15 B 313 VAL VAL SER SER GLN ASP PRO ARG THR LYS ALA GLY LEU SEQRES 16 B 313 TYR TRP GLY TYR THR VAL ARG LEU ALA SER CYS LEU SER SEQRES 17 B 313 ALA VAL PHE ALA GLU ALA PRO PHE GLN ASP GLY TYR ASP SEQRES 18 B 313 LEU THR ILE GLY THR SER GLU ARG GLY SER ASP VAL ALA SEQRES 19 B 313 SER ALA GLN LEU PRO ASN PHE ARG HIS ALA LEU VAL VAL SEQRES 20 B 313 PHE GLY GLY LEU GLN GLY LEU GLU ALA GLY ALA ASP ALA SEQRES 21 B 313 ASP PRO ASN LEU GLU VAL ALA GLU PRO SER VAL LEU PHE SEQRES 22 B 313 ASP LEU TYR VAL ASN THR CYS PRO GLY GLN GLY SER ARG SEQRES 23 B 313 THR ILE ARG THR GLU GLU ALA ILE LEU ILE SER LEU ALA SEQRES 24 B 313 ALA LEU GLN PRO GLY LEU THR GLN ALA GLY ALA ARG HIS SEQRES 25 B 313 THR HET SAH A 401 26 HET 15P A 402 10 HET 15P A 403 14 HET UNX A 404 1 HET UNX A 405 1 HET SAH B 401 26 HET PGO B 402 10 HET 15P B 403 13 HET 15P B 404 16 HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETNAM 15P POLYETHYLENE GLYCOL (N=34) HETNAM UNX UNKNOWN ATOM OR ION HETNAM PGO S-1,2-PROPANEDIOL HETSYN 15P PEG 1500 FORMUL 3 SAH 2(C14 H20 N6 O5 S) FORMUL 4 15P 4(C69 H140 O35) FORMUL 6 UNX 2(X) FORMUL 9 PGO C3 H8 O2 FORMUL 12 HOH *588(H2 O) HELIX 1 1 SER A 82 ALA A 87 5 6 HELIX 2 2 SER A 89 PHE A 107 1 19 HELIX 3 3 GLN A 137 CYS A 151 1 15 HELIX 4 4 PRO A 152 TYR A 154 5 3 HELIX 5 5 LEU A 155 PHE A 160 1 6 HELIX 6 6 GLN A 167 ASN A 173 1 7 HELIX 7 7 GLN A 250 GLY A 257 1 8 HELIX 8 8 CYS A 269 GLU A 276 1 8 HELIX 9 9 ALA A 297 ALA A 299 5 3 HELIX 10 10 LEU A 317 ASP A 324 1 8 HELIX 11 11 GLU A 331 PHE A 336 5 6 HELIX 12 12 ARG A 352 ALA A 373 1 22 HELIX 13 13 SER B 82 ALA B 87 5 6 HELIX 14 14 SER B 89 PHE B 107 1 19 HELIX 15 15 GLN B 137 CYS B 151 1 15 HELIX 16 16 PRO B 152 TYR B 154 5 3 HELIX 17 17 LEU B 155 PHE B 160 1 6 HELIX 18 18 HIS B 163 GLN B 167 5 5 HELIX 19 19 PHE B 168 LEU B 172 5 5 HELIX 20 20 GLN B 250 GLY B 257 1 8 HELIX 21 21 CYS B 269 GLU B 276 1 8 HELIX 22 22 ALA B 297 ALA B 299 5 3 HELIX 23 23 LEU B 317 ASP B 324 1 8 HELIX 24 24 GLU B 331 PHE B 336 5 6 HELIX 25 25 ARG B 352 ALA B 373 1 22 SHEET 1 A 7 THR A 263 ALA A 267 0 SHEET 2 A 7 GLU A 111 PHE A 115 1 N VAL A 114 O ARG A 265 SHEET 3 A 7 THR A 74 PRO A 80 1 N VAL A 77 O VAL A 113 SHEET 4 A 7 HIS A 306 VAL A 310 1 O VAL A 309 N SER A 76 SHEET 5 A 7 LEU A 285 THR A 289 1 N ILE A 287 O LEU A 308 SHEET 6 A 7 LEU A 338 ASN A 341 1 O LEU A 338 N GLY A 288 SHEET 7 A 7 SER A 294 ASP A 295 1 N SER A 294 O ASN A 341 SHEET 1 B 6 PHE A 189 VAL A 194 0 SHEET 2 B 6 SER A 205 ASN A 208 -1 O ASN A 208 N ILE A 193 SHEET 3 B 6 VAL A 215 ILE A 217 -1 O VAL A 215 N VAL A 207 SHEET 4 B 6 TYR A 242 VAL A 247 1 O TYR A 242 N LYS A 216 SHEET 5 B 6 ARG A 226 LEU A 231 -1 N ARG A 230 O LYS A 245 SHEET 6 B 6 PHE A 189 VAL A 194 -1 N ARG A 190 O VAL A 229 SHEET 1 C 7 THR B 263 ALA B 267 0 SHEET 2 C 7 GLU B 111 PHE B 115 1 N ILE B 112 O THR B 263 SHEET 3 C 7 THR B 74 PRO B 80 1 N VAL B 77 O VAL B 113 SHEET 4 C 7 HIS B 306 VAL B 310 1 O ALA B 307 N THR B 74 SHEET 5 C 7 LEU B 285 THR B 289 1 N ILE B 287 O VAL B 310 SHEET 6 C 7 LEU B 338 ASN B 341 1 O LEU B 338 N GLY B 288 SHEET 7 C 7 SER B 294 ASP B 295 1 N SER B 294 O ASN B 341 SHEET 1 D 5 VAL B 215 ILE B 217 0 SHEET 2 D 5 SER B 205 ASN B 208 -1 N VAL B 207 O VAL B 215 SHEET 3 D 5 PHE B 189 VAL B 195 -1 N ILE B 193 O ASN B 208 SHEET 4 D 5 ARG B 226 LEU B 231 -1 O VAL B 229 N ARG B 190 SHEET 5 D 5 GLY B 244 VAL B 247 -1 O LYS B 245 N ARG B 230 SITE 1 AC1 24 THR A 289 SER A 290 GLU A 291 ARG A 292 SITE 2 AC1 24 PHE A 311 GLY A 312 GLY A 313 LEU A 314 SITE 3 AC1 24 GLY A 316 VAL A 340 ASN A 341 THR A 342 SITE 4 AC1 24 GLN A 346 THR A 350 ILE A 351 THR A 353 SITE 5 AC1 24 ALA A 356 HOH A 516 HOH A 534 HOH A 545 SITE 6 AC1 24 HOH A 585 HOH A 682 HOH A 706 HOH A 742 SITE 1 AC2 7 GLN A 147 GLU A 150 TYR A 262 THR A 263 SITE 2 AC2 7 VAL A 264 15P A 403 HOH A 505 SITE 1 AC3 10 ASP A 110 GLU A 191 SER A 249 GLN A 250 SITE 2 AC3 10 TRP A 260 GLY A 261 THR A 263 15P A 402 SITE 3 AC3 10 HOH A 663 HOH A 723 SITE 1 AC4 21 THR B 289 SER B 290 GLU B 291 ARG B 292 SITE 2 AC4 21 PHE B 311 GLY B 312 GLY B 313 LEU B 314 SITE 3 AC4 21 GLY B 316 VAL B 340 ASN B 341 THR B 342 SITE 4 AC4 21 GLN B 346 ILE B 351 THR B 353 ALA B 356 SITE 5 AC4 21 HOH B 577 HOH B 578 HOH B 587 HOH B 645 SITE 6 AC4 21 HOH B 791 SITE 1 AC5 7 TYR B 95 GLY B 98 GLN B 99 ARG B 102 SITE 2 AC5 7 LEU B 172 ASN B 173 HOH B 817 SITE 1 AC6 7 ASP B 110 SER B 249 GLN B 250 TRP B 260 SITE 2 AC6 7 THR B 263 15P B 404 HOH B 768 SITE 1 AC7 9 VAL B 140 GLN B 147 GLU B 150 ARG B 226 SITE 2 AC7 9 THR B 263 VAL B 264 15P B 403 HOH B 525 SITE 3 AC7 9 HOH B 767 CRYST1 127.509 67.816 85.200 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007843 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014746 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011737 0.00000