PDB Short entry for 4RMS HEADER IMMUNE SYSTEM 22-OCT-14 4RMS TITLE CRYSTAL STRUCTURE OF THE D53N BETA-2 MICROGLOBULIN MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 21-119; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: B2M, CDABP0092, HDCMA22P, NM_004048; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS IMMUNOGLOBIN, BETA-SANDWITCH, AMYLOIDOSIS, PATHOLOGIC MUTATION, KEYWDS 2 GENETIC DISEASE, MHC CLASS I, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR M.DE ROSA,M.BOLOGNESI,S.RICAGNO REVDAT 3 20-SEP-23 4RMS 1 REMARK SEQADV REVDAT 2 09-DEC-15 4RMS 1 JRNL REVDAT 1 18-NOV-15 4RMS 0 JRNL AUTH M.DE ROSA,A.BARBIROLI,S.GIORGETTI,P.P.MANGIONE,M.BOLOGNESI, JRNL AUTH 2 S.RICAGNO JRNL TITL DECODING THE STRUCTURAL BASES OF D76N 2-MICROGLOBULIN HIGH JRNL TITL 2 AMYLOIDOGENICITY THROUGH CRYSTALLOGRAPHY AND ASN-SCAN JRNL TITL 3 MUTAGENESIS. JRNL REF PLOS ONE V. 10 44061 2015 JRNL REFN ESSN 1932-6203 JRNL PMID 26625273 JRNL DOI 10.1371/JOURNAL.PONE.0144061 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.45 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 3 NUMBER OF REFLECTIONS : 10911 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1092 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.4573 - 3.3980 0.93 1269 141 0.1683 0.2077 REMARK 3 2 3.3980 - 2.6979 0.95 1259 140 0.1823 0.2482 REMARK 3 3 2.6979 - 2.3572 0.93 1223 137 0.1970 0.2615 REMARK 3 4 2.3572 - 2.1417 0.96 1241 138 0.1935 0.2369 REMARK 3 5 2.1417 - 1.9883 0.92 1184 130 0.2014 0.2821 REMARK 3 6 1.9883 - 1.8711 0.95 1250 140 0.2163 0.2733 REMARK 3 7 1.8711 - 1.7774 0.97 1226 136 0.2155 0.3324 REMARK 3 8 1.7774 - 1.7000 0.91 1167 130 0.2625 0.3160 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.670 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 900 REMARK 3 ANGLE : 1.133 1218 REMARK 3 CHIRALITY : 0.046 126 REMARK 3 PLANARITY : 0.006 159 REMARK 3 DIHEDRAL : 14.065 340 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 5 ) REMARK 3 ORIGIN FOR THE GROUP (A): 48.3273 -21.7103 82.7400 REMARK 3 T TENSOR REMARK 3 T11: 0.1407 T22: 0.0356 REMARK 3 T33: 0.1491 T12: 0.0248 REMARK 3 T13: 0.0013 T23: 0.0113 REMARK 3 L TENSOR REMARK 3 L11: 5.8096 L22: 1.3133 REMARK 3 L33: 7.0016 L12: 1.0313 REMARK 3 L13: 0.2187 L23: -1.8324 REMARK 3 S TENSOR REMARK 3 S11: 0.2338 S12: 0.0761 S13: 0.2002 REMARK 3 S21: -0.1182 S22: 0.0450 S23: 0.0517 REMARK 3 S31: -0.4907 S32: -0.4874 S33: -0.2431 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 6 THROUGH 12 ) REMARK 3 ORIGIN FOR THE GROUP (A): 48.3132 -16.5349 63.0872 REMARK 3 T TENSOR REMARK 3 T11: 0.1166 T22: 0.1430 REMARK 3 T33: 0.1243 T12: -0.0438 REMARK 3 T13: -0.0146 T23: 0.0234 REMARK 3 L TENSOR REMARK 3 L11: 4.8002 L22: 6.8980 REMARK 3 L33: 4.0722 L12: -5.6722 REMARK 3 L13: 4.3823 L23: -5.1710 REMARK 3 S TENSOR REMARK 3 S11: 0.1204 S12: 0.0912 S13: 0.1062 REMARK 3 S21: -0.3990 S22: 0.0437 S23: 0.4654 REMARK 3 S31: 0.3623 S32: -0.3276 S33: -0.1255 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 13 THROUGH 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.2307 -4.5692 51.9967 REMARK 3 T TENSOR REMARK 3 T11: 0.2366 T22: 0.1638 REMARK 3 T33: 0.3357 T12: -0.0658 REMARK 3 T13: -0.0725 T23: 0.0830 REMARK 3 L TENSOR REMARK 3 L11: 3.9884 L22: 2.2284 REMARK 3 L33: 8.5625 L12: -1.8924 REMARK 3 L13: 4.5037 L23: -4.2070 REMARK 3 S TENSOR REMARK 3 S11: -0.1160 S12: 0.4786 S13: 0.8629 REMARK 3 S21: -0.0287 S22: 0.0585 S23: -0.0497 REMARK 3 S31: -0.8149 S32: 0.3469 S33: 0.1130 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 22 THROUGH 30 ) REMARK 3 ORIGIN FOR THE GROUP (A): 48.7064 -13.2385 67.4993 REMARK 3 T TENSOR REMARK 3 T11: 0.1047 T22: 0.1439 REMARK 3 T33: 0.1314 T12: -0.0038 REMARK 3 T13: -0.0249 T23: 0.0332 REMARK 3 L TENSOR REMARK 3 L11: 0.9970 L22: 3.1054 REMARK 3 L33: 9.3760 L12: 0.9933 REMARK 3 L13: -1.7157 L23: -4.5083 REMARK 3 S TENSOR REMARK 3 S11: -0.0146 S12: 0.2038 S13: 0.1100 REMARK 3 S21: -0.2268 S22: 0.0245 S23: 0.1358 REMARK 3 S31: 0.1315 S32: -0.1502 S33: -0.0015 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 31 THROUGH 50 ) REMARK 3 ORIGIN FOR THE GROUP (A): 57.6721 -9.0246 69.5530 REMARK 3 T TENSOR REMARK 3 T11: 0.1153 T22: 0.1751 REMARK 3 T33: 0.1850 T12: -0.0466 REMARK 3 T13: 0.0081 T23: 0.0256 REMARK 3 L TENSOR REMARK 3 L11: 1.8364 L22: 2.0533 REMARK 3 L33: 4.0994 L12: -1.1221 REMARK 3 L13: -1.1531 L23: -0.3195 REMARK 3 S TENSOR REMARK 3 S11: 0.2647 S12: 0.0501 S13: 0.4126 REMARK 3 S21: -0.0447 S22: -0.2024 S23: -0.2979 REMARK 3 S31: -0.5681 S32: 0.5822 S33: -0.0833 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 51 THROUGH 56 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.7588 -6.8254 73.0631 REMARK 3 T TENSOR REMARK 3 T11: 0.2371 T22: 0.1595 REMARK 3 T33: 0.2092 T12: 0.0190 REMARK 3 T13: 0.0042 T23: -0.0007 REMARK 3 L TENSOR REMARK 3 L11: 8.9295 L22: 6.3398 REMARK 3 L33: 5.3766 L12: 7.2782 REMARK 3 L13: -6.9272 L23: -5.5927 REMARK 3 S TENSOR REMARK 3 S11: 0.2869 S12: 0.5859 S13: 0.4105 REMARK 3 S21: -0.2712 S22: 0.1471 S23: 0.2850 REMARK 3 S31: -0.7249 S32: -0.5187 S33: -0.5442 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 57 THROUGH 61 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.2385 -16.2893 82.4343 REMARK 3 T TENSOR REMARK 3 T11: 0.4652 T22: 0.3262 REMARK 3 T33: 0.3326 T12: -0.0813 REMARK 3 T13: 0.0366 T23: 0.0184 REMARK 3 L TENSOR REMARK 3 L11: 3.5106 L22: 2.5980 REMARK 3 L33: 3.6835 L12: 2.8410 REMARK 3 L13: 3.5795 L23: 2.9972 REMARK 3 S TENSOR REMARK 3 S11: -0.0608 S12: -0.9353 S13: -1.3910 REMARK 3 S21: 1.2342 S22: -0.1386 S23: -0.2364 REMARK 3 S31: 1.3312 S32: -1.2479 S33: 0.2537 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 62 THROUGH 69 ) REMARK 3 ORIGIN FOR THE GROUP (A): 48.3129 -8.9226 68.4691 REMARK 3 T TENSOR REMARK 3 T11: 0.1218 T22: 0.1663 REMARK 3 T33: 0.1650 T12: -0.0002 REMARK 3 T13: 0.0281 T23: 0.0155 REMARK 3 L TENSOR REMARK 3 L11: 8.0580 L22: 2.6304 REMARK 3 L33: 5.0503 L12: 4.5428 REMARK 3 L13: -6.3553 L23: -3.5295 REMARK 3 S TENSOR REMARK 3 S11: 0.1855 S12: 0.4112 S13: 0.3966 REMARK 3 S21: 0.0743 S22: 0.1399 S23: 0.2819 REMARK 3 S31: -0.4864 S32: -0.4462 S33: -0.4950 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 70 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): 59.0023 -15.4570 65.1346 REMARK 3 T TENSOR REMARK 3 T11: 0.1791 T22: 0.2062 REMARK 3 T33: 0.1276 T12: 0.0688 REMARK 3 T13: 0.0480 T23: 0.0031 REMARK 3 L TENSOR REMARK 3 L11: 1.8894 L22: 1.9853 REMARK 3 L33: 3.9366 L12: 0.3896 REMARK 3 L13: -0.4598 L23: -0.9552 REMARK 3 S TENSOR REMARK 3 S11: 0.0060 S12: 0.3046 S13: -0.1113 REMARK 3 S21: -0.5359 S22: -0.2593 S23: -0.2904 REMARK 3 S31: 0.3921 S32: 0.7185 S33: 0.1831 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 91 THROUGH 99 ) REMARK 3 ORIGIN FOR THE GROUP (A): 55.1580 -19.3367 59.2677 REMARK 3 T TENSOR REMARK 3 T11: 0.5022 T22: 0.3345 REMARK 3 T33: 0.2317 T12: 0.0884 REMARK 3 T13: -0.0791 T23: -0.0756 REMARK 3 L TENSOR REMARK 3 L11: 5.9270 L22: 1.6539 REMARK 3 L33: 3.2746 L12: -0.2800 REMARK 3 L13: 4.3577 L23: -0.5391 REMARK 3 S TENSOR REMARK 3 S11: 0.3625 S12: 0.8788 S13: -0.4057 REMARK 3 S21: -1.1881 S22: -0.2613 S23: 0.5439 REMARK 3 S31: 0.2650 S32: 0.1413 S33: -0.0586 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4RMS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1000087539. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-AUG-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : BENT CYLINDRICAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10917 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 26.454 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.33600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2YXF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 27% PEG4000, 15% GLYCEROL, 0.2 M REMARK 280 AMMONIUM ACETATE, 0.1 M SODIUM ACETATE, PH 5.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z+1/2 REMARK 290 4555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 20.56898 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 14.45000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 32.85226 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 20.56898 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 14.45000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 32.85226 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 50 OG1 THR A 68 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 213 O HOH A 247 3545 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 57 -92.88 -106.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 102 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2YXF RELATED DB: PDB REMARK 900 RELATED ID: 4FXL RELATED DB: PDB REMARK 900 RELATED ID: 4RMQ RELATED DB: PDB REMARK 900 RELATED ID: 4RMR RELATED DB: PDB REMARK 900 RELATED ID: 4RMT RELATED DB: PDB REMARK 900 RELATED ID: 4RMU RELATED DB: PDB REMARK 900 RELATED ID: 4RMV RELATED DB: PDB REMARK 900 RELATED ID: 4RMW RELATED DB: PDB DBREF 4RMS A 1 99 UNP P61769 B2MG_HUMAN 21 119 SEQADV 4RMS MET A 0 UNP P61769 INITIATING METHIONINE SEQADV 4RMS ASN A 53 UNP P61769 ASP 73 ENGINEERED MUTATION SEQRES 1 A 100 MET ILE GLN ARG THR PRO LYS ILE GLN VAL TYR SER ARG SEQRES 2 A 100 HIS PRO ALA GLU ASN GLY LYS SER ASN PHE LEU ASN CYS SEQRES 3 A 100 TYR VAL SER GLY PHE HIS PRO SER ASP ILE GLU VAL ASP SEQRES 4 A 100 LEU LEU LYS ASN GLY GLU ARG ILE GLU LYS VAL GLU HIS SEQRES 5 A 100 SER ASN LEU SER PHE SER LYS ASP TRP SER PHE TYR LEU SEQRES 6 A 100 LEU TYR TYR THR GLU PHE THR PRO THR GLU LYS ASP GLU SEQRES 7 A 100 TYR ALA CYS ARG VAL ASN HIS VAL THR LEU SER GLN PRO SEQRES 8 A 100 LYS ILE VAL LYS TRP ASP ARG ASP MET HET PEG A 101 7 HET ACT A 102 4 HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM ACT ACETATE ION FORMUL 2 PEG C4 H10 O3 FORMUL 3 ACT C2 H3 O2 1- FORMUL 4 HOH *88(H2 O) SHEET 1 A 4 LYS A 6 ARG A 12 0 SHEET 2 A 4 PHE A 22 PHE A 30 -1 O ASN A 24 N TYR A 10 SHEET 3 A 4 PHE A 62 GLU A 69 -1 O LEU A 64 N VAL A 27 SHEET 4 A 4 HIS A 51 PHE A 56 -1 N SER A 55 O TYR A 63 SHEET 1 B 4 GLU A 44 ARG A 45 0 SHEET 2 B 4 GLU A 36 LYS A 41 -1 N LYS A 41 O GLU A 44 SHEET 3 B 4 TYR A 78 ASN A 83 -1 O ALA A 79 N LEU A 40 SHEET 4 B 4 LYS A 91 LYS A 94 -1 O LYS A 91 N VAL A 82 SSBOND 1 CYS A 25 CYS A 80 1555 1555 2.03 CISPEP 1 HIS A 31 PRO A 32 0 -2.96 SITE 1 AC1 3 TYR A 10 ARG A 12 TYR A 26 SITE 1 AC2 4 TYR A 10 ARG A 12 TYR A 63 MET A 99 CRYST1 55.020 28.900 67.155 90.00 101.93 90.00 I 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018175 0.000000 0.003840 0.00000 SCALE2 0.000000 0.034602 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015220 0.00000