PDB Short entry for 4RQZ HEADER HYDROLASE/PEPTIDE 05-NOV-14 4RQZ TITLE RE-REFINEMENT OF 1SOZ, CRYSTAL STRUCTURE OF DEGS PROTEASE IN COMPLEX TITLE 2 WITH AN ACTIVATING PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEASE DEGS; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: PROTEASE AND PDZ DOMAINS; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: ACTIVATING PEPTIDE; COMPND 8 CHAIN: D, E, F; COMPND 9 FRAGMENT: SYNTHETIC ACTIVATING PEPTIDE; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: DEGS, P12B_C3347; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 OTHER_DETAILS: SYNTHETIC PEPTIDE KEYWDS STRESS RESPONSE, PROTEIN QUALITY CONTROL, PDZ, UPR, HTRA, HYDROLASE, KEYWDS 2 HYDROLASE-PEPTIDE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR R.T.SAUER,R.A.GRANT REVDAT 3 28-FEB-24 4RQZ 1 SEQADV REVDAT 2 18-MAR-15 4RQZ 1 JRNL REVDAT 1 11-MAR-15 4RQZ 0 JRNL AUTH A.K.DE REGT,S.KIM,J.SOHN,R.A.GRANT,T.A.BAKER,R.T.SAUER JRNL TITL A CONSERVED ACTIVATION CLUSTER IS REQUIRED FOR ALLOSTERIC JRNL TITL 2 COMMUNICATION IN HTRA-FAMILY PROTEASES. JRNL REF STRUCTURE V. 23 517 2015 JRNL REFN ISSN 0969-2126 JRNL PMID 25703375 JRNL DOI 10.1016/J.STR.2015.01.012 REMARK 0 REMARK 0 THIS ENTRY 4RQZ REFLECTS AN ALTERNATIVE MODELING OF THE REMARK 0 STRUCTURAL DATA IN R1SOZSF ORIGINAL DATA DETERMINED BY REMARK 0 AUTHOR: C.WILKEN,K.KITZING,R.KURZBAUER,M.EHRMANN,T.CLAUSEN REMARK 0 ORIGINAL DATA REFERENCE 1 REMARK 0 PDB ID: 1soz REMARK 0 AUTH C.WILKEN,K.KITZING,R.KURZBAUER,M.EHRMANN,T.CLAUSEN REMARK 0 TITL CRYSTAL STRUCTURE OF THE DEGS STRESS SENSOR: HOW A PDZ REMARK 0 TITL 2 DOMAIN RECOGNIZES MISFOLDED PROTEIN AND ACTIVATES A REMARK 0 TITL 3 PROTEASE. REMARK 0 REF CELL(CAMBRIDGE,MASS.) V. 117 483 2004 REMARK 0 REFN ISSN 0092-8674 REMARK 0 PMID 15137941 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_1760 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.94 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.9 REMARK 3 NUMBER OF REFLECTIONS : 42017 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 2135 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 14.9399 - 5.8087 0.83 2454 131 0.1806 0.1920 REMARK 3 2 5.8087 - 4.6564 0.83 2432 138 0.1782 0.1889 REMARK 3 3 4.6564 - 4.0815 0.81 2378 127 0.1577 0.1941 REMARK 3 4 4.0815 - 3.7146 0.85 2504 127 0.1951 0.2250 REMARK 3 5 3.7146 - 3.4519 0.91 2654 145 0.1949 0.2557 REMARK 3 6 3.4519 - 3.2506 0.91 2674 135 0.1883 0.2149 REMARK 3 7 3.2506 - 3.0893 0.95 2794 159 0.1915 0.2282 REMARK 3 8 3.0893 - 2.9559 0.97 2799 166 0.1943 0.2408 REMARK 3 9 2.9559 - 2.8429 0.97 2873 133 0.2129 0.2497 REMARK 3 10 2.8429 - 2.7454 0.97 2756 162 0.2490 0.2617 REMARK 3 11 2.7454 - 2.6601 0.95 2812 150 0.2583 0.3209 REMARK 3 12 2.6601 - 2.5845 0.95 2762 129 0.2676 0.3310 REMARK 3 13 2.5845 - 2.5167 0.96 2852 158 0.2644 0.3153 REMARK 3 14 2.5167 - 2.4556 0.96 2751 148 0.2903 0.3519 REMARK 3 15 2.4556 - 2.4000 0.82 2387 127 0.3160 0.3288 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.040 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 95.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 6069 REMARK 3 ANGLE : 1.108 8265 REMARK 3 CHIRALITY : 0.044 1023 REMARK 3 PLANARITY : 0.006 1083 REMARK 3 DIHEDRAL : 11.577 2156 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4RQZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-NOV-14. REMARK 100 THE DEPOSITION ID IS D_1000087688. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: AUTHOR USED THE SF DATA FROM ENTRY 1SOZ. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 102.99200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 71.35500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 102.99200 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 71.35500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 259 REMARK 465 GLY A 260 REMARK 465 ILE A 261 REMARK 465 GLY A 262 REMARK 465 GLY A 263 REMARK 465 ARG A 264 REMARK 465 GLU A 265 REMARK 465 ILE A 266 REMARK 465 ALA A 267 REMARK 465 PRO A 268 REMARK 465 LEU A 269 REMARK 465 HIS A 270 REMARK 465 ALA A 271 REMARK 465 GLN A 272 REMARK 465 GLY A 273 REMARK 465 GLY A 274 REMARK 465 GLY A 275 REMARK 465 ILE A 276 REMARK 465 ASP A 277 REMARK 465 GLN A 278 REMARK 465 LEU A 279 REMARK 465 GLN A 280 REMARK 465 GLY A 281 REMARK 465 GLU A 286 REMARK 465 VAL A 287 REMARK 465 SER A 288 REMARK 465 PRO A 289 REMARK 465 ILE A 298 REMARK 465 GLN A 299 REMARK 465 VAL A 300 REMARK 465 ASN A 301 REMARK 465 ILE A 313 REMARK 465 MET A 336 REMARK 465 ARG A 337 REMARK 465 ASP A 338 REMARK 465 ASP A 339 REMARK 465 LYS A 340 REMARK 465 GLN A 341 REMARK 465 LEU A 342 REMARK 465 ALA A 353 REMARK 465 THR A 354 REMARK 465 ASN A 355 REMARK 465 THR B 68 REMARK 465 ASN B 69 REMARK 465 SER B 70 REMARK 465 HIS B 71 REMARK 465 ASN B 72 REMARK 465 GLN B 73 REMARK 465 GLY B 262 REMARK 465 GLY B 263 REMARK 465 ARG B 264 REMARK 465 GLU B 265 REMARK 465 ILE B 266 REMARK 465 ALA B 267 REMARK 465 PRO B 268 REMARK 465 LEU B 269 REMARK 465 HIS B 270 REMARK 465 ALA B 271 REMARK 465 GLN B 272 REMARK 465 GLY B 273 REMARK 465 GLY B 274 REMARK 465 GLY B 275 REMARK 465 ILE B 276 REMARK 465 ASP B 277 REMARK 465 GLN B 278 REMARK 465 LEU B 279 REMARK 465 GLN B 280 REMARK 465 GLY B 281 REMARK 465 GLU B 286 REMARK 465 VAL B 287 REMARK 465 SER B 288 REMARK 465 ILE B 298 REMARK 465 GLN B 299 REMARK 465 ARG B 337 REMARK 465 ASP B 338 REMARK 465 ASP B 339 REMARK 465 LYS B 340 REMARK 465 GLN B 341 REMARK 465 LEU B 342 REMARK 465 ALA B 353 REMARK 465 THR B 354 REMARK 465 ASN B 355 REMARK 465 GLY C 262 REMARK 465 GLY C 263 REMARK 465 ARG C 264 REMARK 465 GLU C 265 REMARK 465 ILE C 266 REMARK 465 ALA C 267 REMARK 465 PRO C 268 REMARK 465 LEU C 269 REMARK 465 HIS C 270 REMARK 465 ALA C 271 REMARK 465 GLN C 272 REMARK 465 GLY C 273 REMARK 465 GLY C 274 REMARK 465 GLY C 275 REMARK 465 ILE C 276 REMARK 465 ASP C 277 REMARK 465 GLN C 278 REMARK 465 LEU C 279 REMARK 465 GLN C 280 REMARK 465 GLY C 281 REMARK 465 GLU C 286 REMARK 465 VAL C 287 REMARK 465 SER C 288 REMARK 465 ASN C 295 REMARK 465 ALA C 296 REMARK 465 GLY C 297 REMARK 465 ILE C 313 REMARK 465 SER C 314 REMARK 465 ALA C 315 REMARK 465 VAL C 333 REMARK 465 VAL C 334 REMARK 465 VAL C 335 REMARK 465 MET C 336 REMARK 465 ARG C 337 REMARK 465 ASP C 338 REMARK 465 ASP C 339 REMARK 465 LYS C 340 REMARK 465 GLN C 341 REMARK 465 LEU C 342 REMARK 465 THR C 343 REMARK 465 ALA C 353 REMARK 465 THR C 354 REMARK 465 ASN C 355 REMARK 465 ASP D 401 REMARK 465 ASN D 402 REMARK 465 ARG D 403 REMARK 465 LEU D 404 REMARK 465 GLY D 405 REMARK 465 LEU D 406 REMARK 465 VAL D 407 REMARK 465 ASP E 401 REMARK 465 ASN E 402 REMARK 465 ARG E 403 REMARK 465 LEU E 404 REMARK 465 GLY E 405 REMARK 465 LEU E 406 REMARK 465 ASP F 401 REMARK 465 ASN F 402 REMARK 465 ARG F 403 REMARK 465 LEU F 404 REMARK 465 GLY F 405 REMARK 465 LEU F 406 REMARK 465 VAL F 407 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 181 CG CD1 CD2 REMARK 470 ASN A 182 CG OD1 ND2 REMARK 470 ARG A 186 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 222 CG CD CE NZ REMARK 470 LYS A 243 CG CD CE NZ REMARK 470 ASP A 290 CG OD1 OD2 REMARK 470 ASN A 295 CG OD1 ND2 REMARK 470 LEU A 303 CG CD1 CD2 REMARK 470 ILE A 305 CG1 CG2 CD1 REMARK 470 SER A 306 OG REMARK 470 ASP A 308 CG OD1 OD2 REMARK 470 ASN A 309 CG OD1 ND2 REMARK 470 LYS A 310 CG CD CE NZ REMARK 470 LEU A 316 CG CD1 CD2 REMARK 470 GLU A 317 CG CD OE1 OE2 REMARK 470 GLN A 321 CG CD OE1 NE2 REMARK 470 SER A 329 OG REMARK 470 VAL A 335 CG1 CG2 REMARK 470 GLN A 345 CG CD OE1 NE2 REMARK 470 GLU A 350 CG CD OE1 OE2 REMARK 470 ASN B 67 CG OD1 ND2 REMARK 470 GLU B 75 CG CD OE1 OE2 REMARK 470 ASN B 133 CG OD1 ND2 REMARK 470 ARG B 186 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 222 CG CD CE NZ REMARK 470 ASP B 225 CG OD1 OD2 REMARK 470 ASP B 290 CG OD1 OD2 REMARK 470 ASN B 295 CG OD1 ND2 REMARK 470 ASN B 301 CG OD1 ND2 REMARK 470 ASP B 302 CG OD1 OD2 REMARK 470 ILE B 305 CG1 CG2 CD1 REMARK 470 ASP B 308 CG OD1 OD2 REMARK 470 ASN B 309 CG OD1 ND2 REMARK 470 LYS B 310 CG CD CE NZ REMARK 470 LEU B 316 CG CD1 CD2 REMARK 470 GLN B 321 CG CD OE1 NE2 REMARK 470 ARG B 326 CG CD NE CZ NH1 NH2 REMARK 470 MET B 336 CG SD CE REMARK 470 SER C 70 OG REMARK 470 HIS C 71 CG ND1 CD2 CE1 NE2 REMARK 470 LEU C 181 CG CD1 CD2 REMARK 470 ASN C 182 CG OD1 ND2 REMARK 470 ARG C 186 CG CD NE CZ NH1 NH2 REMARK 470 ASN C 224 CG OD1 ND2 REMARK 470 ASP C 225 CG OD1 OD2 REMARK 470 LYS C 243 CG CD CE NZ REMARK 470 ASN C 285 CG OD1 ND2 REMARK 470 GLN C 299 CG CD OE1 NE2 REMARK 470 ASN C 301 CG OD1 ND2 REMARK 470 LEU C 303 CG CD1 CD2 REMARK 470 SER C 306 OG REMARK 470 ASP C 308 CG OD1 OD2 REMARK 470 GLU C 317 CG CD OE1 OE2 REMARK 470 GLN C 321 CG CD OE1 NE2 REMARK 470 SER C 329 OG REMARK 470 GLN C 345 CG CD OE1 NE2 REMARK 470 GLN C 349 CG CD OE1 NE2 REMARK 470 TYR C 351 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 TYR F 408 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 479 O HOH A 480 1.99 REMARK 500 OG SER B 219 O HOH B 463 2.04 REMARK 500 O HOH A 408 O HOH B 453 2.08 REMARK 500 O HOH A 456 O HOH A 484 2.09 REMARK 500 O HOH A 424 O HOH A 511 2.10 REMARK 500 O HOH A 472 O HOH B 428 2.14 REMARK 500 O HOH A 512 O HOH C 408 2.17 REMARK 500 O HOH A 427 O HOH A 489 2.18 REMARK 500 O HOH B 411 O HOH B 442 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE B 76 108.92 -54.93 REMARK 500 ARG B 186 67.34 -108.32 REMARK 500 ASN C 72 -61.64 77.56 REMARK 500 ASN C 133 -157.09 -83.70 REMARK 500 THR C 217 -61.90 -104.34 REMARK 500 GLN D 409 88.63 -161.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1SOZ RELATED DB: PDB REMARK 900 THE DEPOSITED STRUCTURE FACTORS FROM ENTRY 1SOZ WERE USED TO RE- REMARK 900 REFINE THE STRUCTURE TO IMPROVE MODEL GEOMETRY DBREF 4RQZ A 43 355 UNP H9UXC8 H9UXC8_ECOLX 43 355 DBREF 4RQZ B 43 355 UNP H9UXC8 H9UXC8_ECOLX 43 355 DBREF 4RQZ C 43 355 UNP H9UXC8 H9UXC8_ECOLX 43 355 DBREF 4RQZ D 401 410 PDB 4RQZ 4RQZ 401 410 DBREF 4RQZ E 401 410 PDB 4RQZ 4RQZ 401 410 DBREF 4RQZ F 401 410 PDB 4RQZ 4RQZ 401 410 SEQADV 4RQZ MET A 42 UNP H9UXC8 EXPRESSION TAG SEQADV 4RQZ MET B 42 UNP H9UXC8 EXPRESSION TAG SEQADV 4RQZ MET C 42 UNP H9UXC8 EXPRESSION TAG SEQRES 1 A 314 MET THR PRO ALA SER TYR ASN LEU ALA VAL ARG ARG ALA SEQRES 2 A 314 ALA PRO ALA VAL VAL ASN VAL TYR ASN ARG GLY LEU ASN SEQRES 3 A 314 THR ASN SER HIS ASN GLN LEU GLU ILE ARG THR LEU GLY SEQRES 4 A 314 SER GLY VAL ILE MET ASP GLN ARG GLY TYR ILE ILE THR SEQRES 5 A 314 ASN LYS HIS VAL ILE ASN ASP ALA ASP GLN ILE ILE VAL SEQRES 6 A 314 ALA LEU GLN ASP GLY ARG VAL PHE GLU ALA LEU LEU VAL SEQRES 7 A 314 GLY SER ASP SER LEU THR ASP LEU ALA VAL LEU LYS ILE SEQRES 8 A 314 ASN ALA THR GLY GLY LEU PRO THR ILE PRO ILE ASN ALA SEQRES 9 A 314 ARG ARG VAL PRO HIS ILE GLY ASP VAL VAL LEU ALA ILE SEQRES 10 A 314 GLY ASN PRO TYR ASN LEU GLY GLN THR ILE THR GLN GLY SEQRES 11 A 314 ILE ILE SER ALA THR GLY ARG ILE GLY LEU ASN PRO THR SEQRES 12 A 314 GLY ARG GLN ASN PHE LEU GLN THR ASP ALA SER ILE ASN SEQRES 13 A 314 HIS GLY ASN SER GLY GLY ALA LEU VAL ASN SER LEU GLY SEQRES 14 A 314 GLU LEU MET GLY ILE ASN THR LEU SER PHE ASP LYS SER SEQRES 15 A 314 ASN ASP GLY GLU THR PRO GLU GLY ILE GLY PHE ALA ILE SEQRES 16 A 314 PRO PHE GLN LEU ALA THR LYS ILE MET ASP LYS LEU ILE SEQRES 17 A 314 ARG ASP GLY ARG VAL ILE ARG GLY TYR ILE GLY ILE GLY SEQRES 18 A 314 GLY ARG GLU ILE ALA PRO LEU HIS ALA GLN GLY GLY GLY SEQRES 19 A 314 ILE ASP GLN LEU GLN GLY ILE VAL VAL ASN GLU VAL SER SEQRES 20 A 314 PRO ASP GLY PRO ALA ALA ASN ALA GLY ILE GLN VAL ASN SEQRES 21 A 314 ASP LEU ILE ILE SER VAL ASP ASN LYS PRO ALA ILE SER SEQRES 22 A 314 ALA LEU GLU THR MET ASP GLN VAL ALA GLU ILE ARG PRO SEQRES 23 A 314 GLY SER VAL ILE PRO VAL VAL VAL MET ARG ASP ASP LYS SEQRES 24 A 314 GLN LEU THR LEU GLN VAL THR ILE GLN GLU TYR PRO ALA SEQRES 25 A 314 THR ASN SEQRES 1 B 314 MET THR PRO ALA SER TYR ASN LEU ALA VAL ARG ARG ALA SEQRES 2 B 314 ALA PRO ALA VAL VAL ASN VAL TYR ASN ARG GLY LEU ASN SEQRES 3 B 314 THR ASN SER HIS ASN GLN LEU GLU ILE ARG THR LEU GLY SEQRES 4 B 314 SER GLY VAL ILE MET ASP GLN ARG GLY TYR ILE ILE THR SEQRES 5 B 314 ASN LYS HIS VAL ILE ASN ASP ALA ASP GLN ILE ILE VAL SEQRES 6 B 314 ALA LEU GLN ASP GLY ARG VAL PHE GLU ALA LEU LEU VAL SEQRES 7 B 314 GLY SER ASP SER LEU THR ASP LEU ALA VAL LEU LYS ILE SEQRES 8 B 314 ASN ALA THR GLY GLY LEU PRO THR ILE PRO ILE ASN ALA SEQRES 9 B 314 ARG ARG VAL PRO HIS ILE GLY ASP VAL VAL LEU ALA ILE SEQRES 10 B 314 GLY ASN PRO TYR ASN LEU GLY GLN THR ILE THR GLN GLY SEQRES 11 B 314 ILE ILE SER ALA THR GLY ARG ILE GLY LEU ASN PRO THR SEQRES 12 B 314 GLY ARG GLN ASN PHE LEU GLN THR ASP ALA SER ILE ASN SEQRES 13 B 314 HIS GLY ASN SER GLY GLY ALA LEU VAL ASN SER LEU GLY SEQRES 14 B 314 GLU LEU MET GLY ILE ASN THR LEU SER PHE ASP LYS SER SEQRES 15 B 314 ASN ASP GLY GLU THR PRO GLU GLY ILE GLY PHE ALA ILE SEQRES 16 B 314 PRO PHE GLN LEU ALA THR LYS ILE MET ASP LYS LEU ILE SEQRES 17 B 314 ARG ASP GLY ARG VAL ILE ARG GLY TYR ILE GLY ILE GLY SEQRES 18 B 314 GLY ARG GLU ILE ALA PRO LEU HIS ALA GLN GLY GLY GLY SEQRES 19 B 314 ILE ASP GLN LEU GLN GLY ILE VAL VAL ASN GLU VAL SER SEQRES 20 B 314 PRO ASP GLY PRO ALA ALA ASN ALA GLY ILE GLN VAL ASN SEQRES 21 B 314 ASP LEU ILE ILE SER VAL ASP ASN LYS PRO ALA ILE SER SEQRES 22 B 314 ALA LEU GLU THR MET ASP GLN VAL ALA GLU ILE ARG PRO SEQRES 23 B 314 GLY SER VAL ILE PRO VAL VAL VAL MET ARG ASP ASP LYS SEQRES 24 B 314 GLN LEU THR LEU GLN VAL THR ILE GLN GLU TYR PRO ALA SEQRES 25 B 314 THR ASN SEQRES 1 C 314 MET THR PRO ALA SER TYR ASN LEU ALA VAL ARG ARG ALA SEQRES 2 C 314 ALA PRO ALA VAL VAL ASN VAL TYR ASN ARG GLY LEU ASN SEQRES 3 C 314 THR ASN SER HIS ASN GLN LEU GLU ILE ARG THR LEU GLY SEQRES 4 C 314 SER GLY VAL ILE MET ASP GLN ARG GLY TYR ILE ILE THR SEQRES 5 C 314 ASN LYS HIS VAL ILE ASN ASP ALA ASP GLN ILE ILE VAL SEQRES 6 C 314 ALA LEU GLN ASP GLY ARG VAL PHE GLU ALA LEU LEU VAL SEQRES 7 C 314 GLY SER ASP SER LEU THR ASP LEU ALA VAL LEU LYS ILE SEQRES 8 C 314 ASN ALA THR GLY GLY LEU PRO THR ILE PRO ILE ASN ALA SEQRES 9 C 314 ARG ARG VAL PRO HIS ILE GLY ASP VAL VAL LEU ALA ILE SEQRES 10 C 314 GLY ASN PRO TYR ASN LEU GLY GLN THR ILE THR GLN GLY SEQRES 11 C 314 ILE ILE SER ALA THR GLY ARG ILE GLY LEU ASN PRO THR SEQRES 12 C 314 GLY ARG GLN ASN PHE LEU GLN THR ASP ALA SER ILE ASN SEQRES 13 C 314 HIS GLY ASN SER GLY GLY ALA LEU VAL ASN SER LEU GLY SEQRES 14 C 314 GLU LEU MET GLY ILE ASN THR LEU SER PHE ASP LYS SER SEQRES 15 C 314 ASN ASP GLY GLU THR PRO GLU GLY ILE GLY PHE ALA ILE SEQRES 16 C 314 PRO PHE GLN LEU ALA THR LYS ILE MET ASP LYS LEU ILE SEQRES 17 C 314 ARG ASP GLY ARG VAL ILE ARG GLY TYR ILE GLY ILE GLY SEQRES 18 C 314 GLY ARG GLU ILE ALA PRO LEU HIS ALA GLN GLY GLY GLY SEQRES 19 C 314 ILE ASP GLN LEU GLN GLY ILE VAL VAL ASN GLU VAL SER SEQRES 20 C 314 PRO ASP GLY PRO ALA ALA ASN ALA GLY ILE GLN VAL ASN SEQRES 21 C 314 ASP LEU ILE ILE SER VAL ASP ASN LYS PRO ALA ILE SER SEQRES 22 C 314 ALA LEU GLU THR MET ASP GLN VAL ALA GLU ILE ARG PRO SEQRES 23 C 314 GLY SER VAL ILE PRO VAL VAL VAL MET ARG ASP ASP LYS SEQRES 24 C 314 GLN LEU THR LEU GLN VAL THR ILE GLN GLU TYR PRO ALA SEQRES 25 C 314 THR ASN SEQRES 1 D 10 ASP ASN ARG LEU GLY LEU VAL TYR GLN PHE SEQRES 1 E 10 ASP ASN ARG LEU GLY LEU VAL TYR GLN PHE SEQRES 1 F 10 ASP ASN ARG LEU GLY LEU VAL TYR GLN PHE FORMUL 7 HOH *255(H2 O) HELIX 1 1 TYR A 47 ALA A 55 1 9 HELIX 2 2 LYS A 95 ASN A 99 1 5 HELIX 3 3 ASN A 160 LEU A 164 5 5 HELIX 4 4 PHE A 238 GLY A 252 1 15 HELIX 5 5 GLY A 291 GLY A 297 1 7 HELIX 6 6 ALA A 315 ILE A 325 1 11 HELIX 7 7 TYR B 47 ALA B 55 1 9 HELIX 8 8 LYS B 95 ASN B 99 1 5 HELIX 9 9 ASN B 160 LEU B 164 5 5 HELIX 10 10 PHE B 238 GLY B 252 1 15 HELIX 11 11 GLY B 291 GLY B 297 1 7 HELIX 12 12 SER B 314 ILE B 325 1 12 HELIX 13 13 TYR C 47 ALA C 55 1 9 HELIX 14 14 LYS C 95 ASN C 99 1 5 HELIX 15 15 ASN C 160 LEU C 164 5 5 HELIX 16 16 PHE C 238 GLY C 252 1 15 HELIX 17 17 GLU C 317 ILE C 325 1 9 SHEET 1 A 7 VAL A 58 GLY A 65 0 SHEET 2 A 7 GLU A 75 ILE A 84 -1 O ARG A 77 N ASN A 63 SHEET 3 A 7 TYR A 90 ASN A 94 -1 O ILE A 92 N VAL A 83 SHEET 4 A 7 LEU A 127 LYS A 131 -1 O LEU A 130 N ILE A 91 SHEET 5 A 7 VAL A 113 ASP A 122 -1 N LEU A 117 O LYS A 131 SHEET 6 A 7 GLN A 103 ALA A 107 -1 N VAL A 106 O PHE A 114 SHEET 7 A 7 VAL A 58 GLY A 65 -1 N ARG A 64 O GLN A 103 SHEET 1 B 7 VAL A 154 GLY A 159 0 SHEET 2 B 7 THR A 167 ALA A 175 -1 O THR A 167 N GLY A 159 SHEET 3 B 7 LEU A 190 THR A 192 -1 O GLN A 191 N SER A 174 SHEET 4 B 7 GLY A 233 PRO A 237 -1 O ALA A 235 N LEU A 190 SHEET 5 B 7 LEU A 212 SER A 219 -1 N LEU A 218 O PHE A 234 SHEET 6 B 7 ALA A 204 VAL A 206 -1 N LEU A 205 O GLY A 214 SHEET 7 B 7 VAL A 154 GLY A 159 -1 N ILE A 158 O ALA A 204 SHEET 1 C 2 GLY A 257 TYR A 258 0 SHEET 2 C 2 GLN A 349 GLU A 350 -1 O GLN A 349 N TYR A 258 SHEET 1 D 4 LYS A 310 PRO A 311 0 SHEET 2 D 4 SER A 306 VAL A 307 -1 N VAL A 307 O LYS A 310 SHEET 3 D 4 VAL A 330 VAL A 334 -1 O VAL A 334 N SER A 306 SHEET 4 D 4 LEU A 344 THR A 347 -1 O LEU A 344 N VAL A 333 SHEET 1 E 7 VAL B 58 GLY B 65 0 SHEET 2 E 7 GLU B 75 ASP B 86 -1 O GLY B 80 N VAL B 61 SHEET 3 E 7 TYR B 90 ASN B 94 -1 O TYR B 90 N MET B 85 SHEET 4 E 7 LEU B 127 LYS B 131 -1 O LEU B 130 N ILE B 91 SHEET 5 E 7 VAL B 113 ASP B 122 -1 N LEU B 117 O LYS B 131 SHEET 6 E 7 GLN B 103 ALA B 107 -1 N ILE B 104 O ALA B 116 SHEET 7 E 7 VAL B 58 GLY B 65 -1 N TYR B 62 O ILE B 105 SHEET 1 F 7 VAL B 154 GLY B 159 0 SHEET 2 F 7 THR B 167 ALA B 175 -1 O THR B 167 N GLY B 159 SHEET 3 F 7 LEU B 190 THR B 192 -1 O GLN B 191 N ALA B 175 SHEET 4 F 7 GLY B 233 PRO B 237 -1 O GLY B 233 N THR B 192 SHEET 5 F 7 LEU B 212 SER B 219 -1 N LEU B 218 O PHE B 234 SHEET 6 F 7 ALA B 204 ASN B 207 -1 N LEU B 205 O MET B 213 SHEET 7 F 7 VAL B 154 GLY B 159 -1 N ILE B 158 O ALA B 204 SHEET 1 G 2 GLY B 257 TYR B 258 0 SHEET 2 G 2 GLN B 349 GLU B 350 -1 O GLN B 349 N TYR B 258 SHEET 1 H 4 LYS B 310 PRO B 311 0 SHEET 2 H 4 LEU B 303 VAL B 307 -1 N VAL B 307 O LYS B 310 SHEET 3 H 4 VAL B 330 MET B 336 -1 O MET B 336 N LEU B 303 SHEET 4 H 4 LEU B 344 THR B 347 -1 O LEU B 344 N VAL B 333 SHEET 1 I 7 VAL C 113 GLU C 115 0 SHEET 2 I 7 GLN C 103 ALA C 107 -1 N VAL C 106 O PHE C 114 SHEET 3 I 7 VAL C 58 LEU C 66 -1 N ARG C 64 O GLN C 103 SHEET 4 I 7 LEU C 74 ILE C 84 -1 O ARG C 77 N ASN C 63 SHEET 5 I 7 TYR C 90 ASN C 94 -1 O ILE C 92 N VAL C 83 SHEET 6 I 7 LEU C 127 LYS C 131 -1 O ALA C 128 N THR C 93 SHEET 7 I 7 LEU C 117 ASP C 122 -1 N ASP C 122 O LEU C 127 SHEET 1 J 7 VAL C 154 GLY C 159 0 SHEET 2 J 7 THR C 167 ARG C 178 -1 O THR C 167 N GLY C 159 SHEET 3 J 7 PHE C 189 THR C 192 -1 O GLN C 191 N SER C 174 SHEET 4 J 7 GLY C 233 PRO C 237 -1 O ALA C 235 N LEU C 190 SHEET 5 J 7 LEU C 212 SER C 219 -1 N ILE C 215 O ILE C 236 SHEET 6 J 7 ALA C 204 VAL C 206 -1 N LEU C 205 O MET C 213 SHEET 7 J 7 VAL C 154 GLY C 159 -1 N ILE C 158 O ALA C 204 SHEET 1 K 2 GLY C 257 TYR C 258 0 SHEET 2 K 2 GLN C 349 GLU C 350 -1 O GLN C 349 N TYR C 258 SHEET 1 L 2 SER C 306 VAL C 307 0 SHEET 2 L 2 LYS C 310 PRO C 311 -1 O LYS C 310 N VAL C 307 SHEET 1 M 2 VAL C 330 ILE C 331 0 SHEET 2 M 2 VAL C 346 THR C 347 -1 O VAL C 346 N ILE C 331 CRYST1 205.984 142.710 41.167 90.00 89.24 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004855 0.000000 -0.000064 0.00000 SCALE2 0.000000 0.007007 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024293 0.00000