PDB Short entry for 4RS6 HEADER TRANSFERASE 07-NOV-14 4RS6 TITLE CRYSTAL STRUCTURE OF THE C DOMAIN OF POLO LIKE KINASE II IN HOMO TITLE 2 SAPIENS COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE PLK2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: PBD DOMAIN, UNP RESIDUES 451-685; COMPND 5 SYNONYM: POLO-LIKE KINASE 2, PLK-2, HPLK2, SERINE/THREONINE-PROTEIN COMPND 6 KINASE SNK, HSNK, SERUM-INDUCIBLE KINASE; COMPND 7 EC: 2.7.11.21; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PLK2, SNK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-1 KEYWDS FIRST PBD DOMAIN OF POLO LIKE KINASE II, PHOSPHORYLATION OF TARGET KEYWDS 2 PROTEIN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR H.SHAN,J.QUAN,T.WANG REVDAT 3 08-NOV-23 4RS6 1 SEQADV REVDAT 2 08-JUN-16 4RS6 1 JRNL REVDAT 1 03-DEC-14 4RS6 0 JRNL AUTH H.M.SHAN,T.WANG,J.M.QUAN JRNL TITL CRYSTAL STRUCTURE OF THE POLO-BOX DOMAIN OF POLO-LIKE KINASE JRNL TITL 2 2 JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 456 780 2015 JRNL REFN ISSN 0006-291X JRNL PMID 25511705 JRNL DOI 10.1016/J.BBRC.2014.11.125 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.83 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 17518 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 947 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1236 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3170 REMARK 3 BIN FREE R VALUE SET COUNT : 82 REMARK 3 BIN FREE R VALUE : 0.3900 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3448 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 14 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 71.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.478 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.291 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.217 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 22.591 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3528 ; 0.015 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3280 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4782 ; 1.737 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7550 ; 0.888 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 424 ; 7.788 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 170 ;35.105 ;24.471 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 614 ;19.870 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;18.173 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 530 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3978 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 838 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 470 A 682 REMARK 3 ORIGIN FOR THE GROUP (A): -19.1653 -55.0548 -10.6011 REMARK 3 T TENSOR REMARK 3 T11: 0.0827 T22: 0.0869 REMARK 3 T33: 0.2303 T12: -0.0347 REMARK 3 T13: 0.0631 T23: -0.0219 REMARK 3 L TENSOR REMARK 3 L11: 4.5673 L22: 2.8431 REMARK 3 L33: 6.6787 L12: 0.4476 REMARK 3 L13: 1.9780 L23: 0.1465 REMARK 3 S TENSOR REMARK 3 S11: -0.0785 S12: 0.0737 S13: -0.4352 REMARK 3 S21: 0.2101 S22: 0.2908 S23: -0.0432 REMARK 3 S31: -0.0940 S32: 0.1769 S33: -0.2123 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 470 B 682 REMARK 3 ORIGIN FOR THE GROUP (A): -38.2322 -33.4712 -3.3083 REMARK 3 T TENSOR REMARK 3 T11: 0.2370 T22: 0.1812 REMARK 3 T33: 0.1146 T12: 0.0769 REMARK 3 T13: -0.0230 T23: 0.1004 REMARK 3 L TENSOR REMARK 3 L11: 5.6622 L22: 6.6431 REMARK 3 L33: 4.1560 L12: 2.8236 REMARK 3 L13: -3.3081 L23: -3.2224 REMARK 3 S TENSOR REMARK 3 S11: -0.0896 S12: 0.1874 S13: 0.4722 REMARK 3 S21: 0.1234 S22: 0.3788 S23: 0.2360 REMARK 3 S31: -0.2637 S32: -0.4921 S33: -0.2892 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4RS6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-NOV-14. REMARK 100 THE DEPOSITION ID IS D_1000087731. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-NOV-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17518 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.0 REMARK 200 DATA REDUNDANCY : 21.80 REMARK 200 R MERGE (I) : 0.16000 REMARK 200 R SYM (I) : 0.15000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.86000 REMARK 200 R SYM FOR SHELL (I) : 0.84000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4J7B REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 35%(V/V) TACSIMATE, PH 7.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 76.53750 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 76.53750 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 76.53750 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 76.53750 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 76.53750 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 76.53750 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 76.53750 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 76.53750 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 76.53750 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 76.53750 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 76.53750 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 76.53750 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 76.53750 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 76.53750 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 76.53750 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 76.53750 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 76.53750 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 76.53750 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 76.53750 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 76.53750 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 76.53750 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 76.53750 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 76.53750 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 76.53750 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 76.53750 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 76.53750 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 76.53750 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 76.53750 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 76.53750 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 76.53750 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 76.53750 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 76.53750 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 76.53750 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 76.53750 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 76.53750 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 76.53750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 444 REMARK 465 PRO A 445 REMARK 465 LEU A 446 REMARK 465 GLY A 447 REMARK 465 SER A 448 REMARK 465 PRO A 449 REMARK 465 GLU A 450 REMARK 465 GLY A 451 REMARK 465 THR A 452 REMARK 465 LEU A 453 REMARK 465 GLY A 454 REMARK 465 SER A 455 REMARK 465 CYS A 456 REMARK 465 SER A 457 REMARK 465 SER A 458 REMARK 465 SER A 459 REMARK 465 SER A 460 REMARK 465 GLU A 461 REMARK 465 CYS A 462 REMARK 465 LEU A 463 REMARK 465 GLU A 464 REMARK 465 ASP A 465 REMARK 465 SER A 466 REMARK 465 THR A 467 REMARK 465 MET A 468 REMARK 465 GLY A 469 REMARK 465 ARG A 683 REMARK 465 CYS A 684 REMARK 465 ASN A 685 REMARK 465 GLY B 444 REMARK 465 PRO B 445 REMARK 465 LEU B 446 REMARK 465 GLY B 447 REMARK 465 SER B 448 REMARK 465 PRO B 449 REMARK 465 GLU B 450 REMARK 465 GLY B 451 REMARK 465 THR B 452 REMARK 465 LEU B 453 REMARK 465 GLY B 454 REMARK 465 SER B 455 REMARK 465 CYS B 456 REMARK 465 SER B 457 REMARK 465 SER B 458 REMARK 465 SER B 459 REMARK 465 SER B 460 REMARK 465 GLU B 461 REMARK 465 CYS B 462 REMARK 465 LEU B 463 REMARK 465 GLU B 464 REMARK 465 ASP B 465 REMARK 465 SER B 466 REMARK 465 THR B 467 REMARK 465 MET B 468 REMARK 465 GLY B 469 REMARK 465 ARG B 683 REMARK 465 CYS B 684 REMARK 465 ASN B 685 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 522 OG1 THR A 524 1.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP B 585 N ASP B 585 CA -0.171 REMARK 500 ASP B 585 CA ASP B 585 CB -0.220 REMARK 500 GLY B 586 CA GLY B 586 C -0.288 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 597 N - CA - C ANGL. DEV. = -18.4 DEGREES REMARK 500 ARG B 477 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG B 480 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ASP B 585 N - CA - CB ANGL. DEV. = 17.5 DEGREES REMARK 500 GLY B 586 N - CA - C ANGL. DEV. = 22.6 DEGREES REMARK 500 ASP B 588 N - CA - C ANGL. DEV. = 22.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 490 -72.65 -89.48 REMARK 500 LYS A 513 -39.39 -132.97 REMARK 500 TYR A 514 -35.98 -133.46 REMARK 500 HIS A 523 21.15 84.17 REMARK 500 LYS A 541 10.34 59.38 REMARK 500 ASP A 560 64.42 -102.36 REMARK 500 GLN A 637 -55.51 -123.48 REMARK 500 ASN A 638 55.36 -111.96 REMARK 500 LEU A 681 11.46 -69.69 REMARK 500 TYR B 514 -51.89 -132.96 REMARK 500 ASP B 588 68.65 65.43 REMARK 500 LEU B 589 132.91 -34.36 REMARK 500 GLN B 637 -46.00 -131.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLY B 586 -14.58 REMARK 500 REMARK 500 REMARK: NULL DBREF 4RS6 A 451 685 UNP Q9NYY3 PLK2_HUMAN 451 685 DBREF 4RS6 B 451 685 UNP Q9NYY3 PLK2_HUMAN 451 685 SEQADV 4RS6 GLY A 444 UNP Q9NYY3 EXPRESSION TAG SEQADV 4RS6 PRO A 445 UNP Q9NYY3 EXPRESSION TAG SEQADV 4RS6 LEU A 446 UNP Q9NYY3 EXPRESSION TAG SEQADV 4RS6 GLY A 447 UNP Q9NYY3 EXPRESSION TAG SEQADV 4RS6 SER A 448 UNP Q9NYY3 EXPRESSION TAG SEQADV 4RS6 PRO A 449 UNP Q9NYY3 EXPRESSION TAG SEQADV 4RS6 GLU A 450 UNP Q9NYY3 EXPRESSION TAG SEQADV 4RS6 GLY B 444 UNP Q9NYY3 EXPRESSION TAG SEQADV 4RS6 PRO B 445 UNP Q9NYY3 EXPRESSION TAG SEQADV 4RS6 LEU B 446 UNP Q9NYY3 EXPRESSION TAG SEQADV 4RS6 GLY B 447 UNP Q9NYY3 EXPRESSION TAG SEQADV 4RS6 SER B 448 UNP Q9NYY3 EXPRESSION TAG SEQADV 4RS6 PRO B 449 UNP Q9NYY3 EXPRESSION TAG SEQADV 4RS6 GLU B 450 UNP Q9NYY3 EXPRESSION TAG SEQRES 1 A 242 GLY PRO LEU GLY SER PRO GLU GLY THR LEU GLY SER CYS SEQRES 2 A 242 SER SER SER SER GLU CYS LEU GLU ASP SER THR MET GLY SEQRES 3 A 242 SER VAL ALA ASP THR VAL ALA ARG VAL LEU ARG GLY CYS SEQRES 4 A 242 LEU GLU ASN MET PRO GLU ALA ASP CYS ILE PRO LYS GLU SEQRES 5 A 242 GLN LEU SER THR SER PHE GLN TRP VAL THR LYS TRP VAL SEQRES 6 A 242 ASP TYR SER ASN LYS TYR GLY PHE GLY TYR GLN LEU SER SEQRES 7 A 242 ASP HIS THR VAL GLY VAL LEU PHE ASN ASN GLY ALA HIS SEQRES 8 A 242 MET SER LEU LEU PRO ASP LYS LYS THR VAL HIS TYR TYR SEQRES 9 A 242 ALA GLU LEU GLY GLN CYS SER VAL PHE PRO ALA THR ASP SEQRES 10 A 242 ALA PRO GLU GLN PHE ILE SER GLN VAL THR VAL LEU LYS SEQRES 11 A 242 TYR PHE SER HIS TYR MET GLU GLU ASN LEU MET ASP GLY SEQRES 12 A 242 GLY ASP LEU PRO SER VAL THR ASP ILE ARG ARG PRO ARG SEQRES 13 A 242 LEU TYR LEU LEU GLN TRP LEU LYS SER ASP LYS ALA LEU SEQRES 14 A 242 MET MET LEU PHE ASN ASP GLY THR PHE GLN VAL ASN PHE SEQRES 15 A 242 TYR HIS ASP HIS THR LYS ILE ILE ILE CYS SER GLN ASN SEQRES 16 A 242 GLU GLU TYR LEU LEU THR TYR ILE ASN GLU ASP ARG ILE SEQRES 17 A 242 SER THR THR PHE ARG LEU THR THR LEU LEU MET SER GLY SEQRES 18 A 242 CYS SER SER GLU LEU LYS ASN ARG MET GLU TYR ALA LEU SEQRES 19 A 242 ASN MET LEU LEU GLN ARG CYS ASN SEQRES 1 B 242 GLY PRO LEU GLY SER PRO GLU GLY THR LEU GLY SER CYS SEQRES 2 B 242 SER SER SER SER GLU CYS LEU GLU ASP SER THR MET GLY SEQRES 3 B 242 SER VAL ALA ASP THR VAL ALA ARG VAL LEU ARG GLY CYS SEQRES 4 B 242 LEU GLU ASN MET PRO GLU ALA ASP CYS ILE PRO LYS GLU SEQRES 5 B 242 GLN LEU SER THR SER PHE GLN TRP VAL THR LYS TRP VAL SEQRES 6 B 242 ASP TYR SER ASN LYS TYR GLY PHE GLY TYR GLN LEU SER SEQRES 7 B 242 ASP HIS THR VAL GLY VAL LEU PHE ASN ASN GLY ALA HIS SEQRES 8 B 242 MET SER LEU LEU PRO ASP LYS LYS THR VAL HIS TYR TYR SEQRES 9 B 242 ALA GLU LEU GLY GLN CYS SER VAL PHE PRO ALA THR ASP SEQRES 10 B 242 ALA PRO GLU GLN PHE ILE SER GLN VAL THR VAL LEU LYS SEQRES 11 B 242 TYR PHE SER HIS TYR MET GLU GLU ASN LEU MET ASP GLY SEQRES 12 B 242 GLY ASP LEU PRO SER VAL THR ASP ILE ARG ARG PRO ARG SEQRES 13 B 242 LEU TYR LEU LEU GLN TRP LEU LYS SER ASP LYS ALA LEU SEQRES 14 B 242 MET MET LEU PHE ASN ASP GLY THR PHE GLN VAL ASN PHE SEQRES 15 B 242 TYR HIS ASP HIS THR LYS ILE ILE ILE CYS SER GLN ASN SEQRES 16 B 242 GLU GLU TYR LEU LEU THR TYR ILE ASN GLU ASP ARG ILE SEQRES 17 B 242 SER THR THR PHE ARG LEU THR THR LEU LEU MET SER GLY SEQRES 18 B 242 CYS SER SER GLU LEU LYS ASN ARG MET GLU TYR ALA LEU SEQRES 19 B 242 ASN MET LEU LEU GLN ARG CYS ASN FORMUL 3 HOH *14(H2 O) HELIX 1 1 SER A 470 MET A 486 1 17 HELIX 2 2 PRO A 562 LEU A 583 1 22 HELIX 3 3 LEU A 657 GLY A 664 1 8 HELIX 4 4 SER A 666 LEU A 681 1 16 HELIX 5 5 VAL B 471 GLU B 484 1 14 HELIX 6 6 PRO B 562 GLN B 564 5 3 HELIX 7 7 PHE B 565 GLU B 580 1 16 HELIX 8 8 LEU B 657 GLY B 664 1 8 HELIX 9 9 SER B 666 LEU B 681 1 16 SHEET 1 A 6 VAL A 504 TYR A 510 0 SHEET 2 A 6 GLY A 515 LEU A 520 -1 O GLY A 517 N VAL A 508 SHEET 3 A 6 VAL A 525 PHE A 529 -1 O LEU A 528 N PHE A 516 SHEET 4 A 6 HIS A 534 LEU A 537 -1 O LEU A 537 N VAL A 525 SHEET 5 A 6 THR A 543 TYR A 547 -1 O TYR A 547 N HIS A 534 SHEET 6 A 6 CYS A 553 PRO A 557 -1 O SER A 554 N TYR A 546 SHEET 1 B12 SER A 652 ARG A 656 0 SHEET 2 B12 TYR A 641 ILE A 646 -1 N LEU A 643 O PHE A 655 SHEET 3 B12 LYS A 631 SER A 636 -1 N CYS A 635 O LEU A 642 SHEET 4 B12 PHE A 621 PHE A 625 -1 N PHE A 621 O ILE A 634 SHEET 5 B12 ALA A 611 PHE A 616 -1 N MET A 614 O GLN A 622 SHEET 6 B12 LEU A 602 SER A 608 -1 N LEU A 606 O MET A 613 SHEET 7 B12 LEU B 602 SER B 608 -1 O LYS B 607 N LYS A 607 SHEET 8 B12 LEU B 612 PHE B 616 -1 O MET B 613 N LEU B 606 SHEET 9 B12 PHE B 621 PHE B 625 -1 O GLN B 622 N MET B 614 SHEET 10 B12 THR B 630 SER B 636 -1 O THR B 630 N PHE B 625 SHEET 11 B12 TYR B 641 ILE B 646 -1 O LEU B 642 N CYS B 635 SHEET 12 B12 SER B 652 ARG B 656 -1 O THR B 653 N TYR B 645 SHEET 1 C 6 VAL B 504 TYR B 510 0 SHEET 2 C 6 GLY B 515 LEU B 520 -1 O GLY B 517 N VAL B 508 SHEET 3 C 6 VAL B 525 PHE B 529 -1 O GLY B 526 N TYR B 518 SHEET 4 C 6 HIS B 534 LEU B 537 -1 O LEU B 537 N VAL B 525 SHEET 5 C 6 THR B 543 TYR B 547 -1 O HIS B 545 N SER B 536 SHEET 6 C 6 SER B 554 PRO B 557 -1 O SER B 554 N TYR B 546 CRYST1 153.075 153.075 153.075 90.00 90.00 90.00 I 2 3 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006533 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006533 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006533 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 2 -0.797687 0.386748 -0.462732 -38.24932 1 MTRIX2 2 0.302483 -0.407216 -0.861788 -59.96606 1 MTRIX3 2 -0.521727 -0.827406 0.207846 -57.55250 1