PDB Short entry for 4RTJ HEADER TRANSFERASE/DNA 15-NOV-14 4RTJ TITLE A NON-COGNATE COMPLEX OF ESCHERICHIA COLI DNA ADENINE TITLE 2 METHYLTRANSFERASE (DAM) WITH DNA AND SINEFUNGIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA ADENINE METHYLASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'-D(*TP*CP*TP*AP*GP*AP*TP*CP*TP*AP*GP*A)-3'); COMPND 7 CHAIN: F, G; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 1110693; SOURCE 4 STRAIN: K-12 SUBSTR. MDS42; SOURCE 5 GENE: DAM, ECMDS42_2833; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HMS174(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630 KEYWDS DAM METHYLATION, GATC RECOGNITION, BASE FLIPPING, BACTERIAL KEYWDS 2 VIRULENCE, METHYLATION-INDEPENDENT TRANSCRIPTIONAL REPRESSOR, KEYWDS 3 TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.R.HORTON,X.CHENG REVDAT 4 20-SEP-23 4RTJ 1 REMARK SEQADV REVDAT 3 20-MAY-15 4RTJ 1 JRNL REVDAT 2 22-APR-15 4RTJ 1 JRNL REVDAT 1 15-APR-15 4RTJ 0 JRNL AUTH J.R.HORTON,X.ZHANG,R.M.BLUMENTHAL,X.CHENG JRNL TITL STRUCTURES OF ESCHERICHIA COLI DNA ADENINE METHYLTRANSFERASE JRNL TITL 2 (DAM) IN COMPLEX WITH A NON-GATC SEQUENCE: POTENTIAL JRNL TITL 3 IMPLICATIONS FOR METHYLATION-INDEPENDENT TRANSCRIPTIONAL JRNL TITL 4 REPRESSION. JRNL REF NUCLEIC ACIDS RES. V. 43 4296 2015 JRNL REFN ISSN 0305-1048 JRNL PMID 25845600 JRNL DOI 10.1093/NAR/GKV251 REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.50 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 23412 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.840 REMARK 3 FREE R VALUE TEST SET COUNT : 1132 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.5129 - 3.9755 0.98 2930 167 0.1935 0.2166 REMARK 3 2 3.9755 - 3.1563 1.00 2856 132 0.1921 0.2251 REMARK 3 3 3.1563 - 2.7576 1.00 2834 133 0.2385 0.2515 REMARK 3 4 2.7576 - 2.5055 0.99 2798 132 0.2440 0.2750 REMARK 3 5 2.5055 - 2.3260 0.99 2765 131 0.2444 0.2615 REMARK 3 6 2.3260 - 2.1889 0.98 2693 166 0.2467 0.2516 REMARK 3 7 2.1889 - 2.0793 0.97 2707 137 0.2462 0.2520 REMARK 3 8 2.0793 - 1.9900 0.97 2697 134 0.2662 0.2869 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.070 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 2646 REMARK 3 ANGLE : 0.585 3693 REMARK 3 CHIRALITY : 0.023 398 REMARK 3 PLANARITY : 0.003 394 REMARK 3 DIHEDRAL : 18.216 976 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 3:39 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.7497 -3.5599 89.9391 REMARK 3 T TENSOR REMARK 3 T11: 0.4654 T22: 0.5699 REMARK 3 T33: 0.6250 T12: 0.0561 REMARK 3 T13: -0.2055 T23: -0.0274 REMARK 3 L TENSOR REMARK 3 L11: 1.6582 L22: 1.9787 REMARK 3 L33: 3.1235 L12: 0.5728 REMARK 3 L13: 0.7043 L23: 0.5402 REMARK 3 S TENSOR REMARK 3 S11: 0.3642 S12: 0.5074 S13: -0.5152 REMARK 3 S21: -0.6577 S22: -0.1605 S23: 0.8810 REMARK 3 S31: 0.1692 S32: -0.6015 S33: -0.1327 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 40:180 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.2201 3.4341 102.1932 REMARK 3 T TENSOR REMARK 3 T11: 0.1934 T22: 0.2544 REMARK 3 T33: 0.2475 T12: 0.0352 REMARK 3 T13: -0.0300 T23: 0.0271 REMARK 3 L TENSOR REMARK 3 L11: 3.1639 L22: 4.0762 REMARK 3 L33: 2.7505 L12: -0.3350 REMARK 3 L13: 0.9026 L23: -0.2802 REMARK 3 S TENSOR REMARK 3 S11: 0.0876 S12: -0.1295 S13: -0.1377 REMARK 3 S21: 0.1224 S22: 0.0424 S23: 0.2094 REMARK 3 S31: 0.0557 S32: -0.2649 S33: -0.1100 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 181:270 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.2514 -5.8626 78.0537 REMARK 3 T TENSOR REMARK 3 T11: 0.6849 T22: 0.9136 REMARK 3 T33: 0.4826 T12: 0.2715 REMARK 3 T13: -0.1570 T23: -0.2323 REMARK 3 L TENSOR REMARK 3 L11: 4.8726 L22: 4.3584 REMARK 3 L33: 3.9964 L12: -0.4490 REMARK 3 L13: -0.4741 L23: -0.3770 REMARK 3 S TENSOR REMARK 3 S11: 0.7482 S12: 1.7096 S13: -0.7058 REMARK 3 S21: -0.7761 S22: -0.4785 S23: 0.1677 REMARK 3 S31: 0.6491 S32: 0.1716 S33: -0.2093 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN F AND RESID 1:12 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.7954 17.5147 86.3693 REMARK 3 T TENSOR REMARK 3 T11: 0.3491 T22: 0.6470 REMARK 3 T33: 0.5462 T12: -0.0196 REMARK 3 T13: 0.0503 T23: 0.1771 REMARK 3 L TENSOR REMARK 3 L11: 5.5505 L22: 8.3224 REMARK 3 L33: 7.2649 L12: 0.1448 REMARK 3 L13: 2.6504 L23: 0.2475 REMARK 3 S TENSOR REMARK 3 S11: -0.5172 S12: 1.3205 S13: 1.0483 REMARK 3 S21: -0.3672 S22: 0.1923 S23: -0.4282 REMARK 3 S31: 0.2114 S32: -0.0778 S33: 0.1574 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN G AND RESID 1:12 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.5379 19.0744 88.0119 REMARK 3 T TENSOR REMARK 3 T11: 0.3537 T22: 0.4761 REMARK 3 T33: 0.5873 T12: 0.0028 REMARK 3 T13: -0.0614 T23: 0.1445 REMARK 3 L TENSOR REMARK 3 L11: 7.4588 L22: 3.4503 REMARK 3 L33: 5.3088 L12: 3.3489 REMARK 3 L13: -0.7523 L23: -2.2012 REMARK 3 S TENSOR REMARK 3 S11: -0.5350 S12: 0.7914 S13: 0.3889 REMARK 3 S21: -0.1648 S22: 0.1958 S23: -0.3287 REMARK 3 S31: -0.0103 S32: 0.1950 S33: 0.1534 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4RTJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-NOV-14. REMARK 100 THE DEPOSITION ID IS D_1000087777. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUL-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : SI(111) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23469 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.990 REMARK 200 RESOLUTION RANGE LOW (A) : 32.509 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 7.700 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.70 REMARK 200 R MERGE FOR SHELL (I) : 0.37400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: GLRF REMARK 200 STARTING MODEL: PDB ENTRY 2G1P REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% PEG200, 100MM KCL, 10MM MGSO4, REMARK 280 100MM MES BUFFER, PH 7.2, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 18.18350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.52150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.55700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 72.52150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 18.18350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.55700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, F, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 ALA A 189 REMARK 465 THR A 190 REMARK 465 ALA A 191 REMARK 465 ASN A 192 REMARK 465 PHE A 193 REMARK 465 THR A 194 REMARK 465 ALA A 195 REMARK 465 TYR A 196 REMARK 465 HIS A 197 REMARK 465 SER A 250 REMARK 465 ILE A 251 REMARK 465 SER A 252 REMARK 465 SER A 253 REMARK 465 ASN A 254 REMARK 465 GLY A 255 REMARK 465 GLY A 256 REMARK 465 THR A 257 REMARK 465 GLY A 271 REMARK 465 VAL A 272 REMARK 465 VAL A 273 REMARK 465 SER A 274 REMARK 465 PRO A 275 REMARK 465 ALA A 276 REMARK 465 LYS A 277 REMARK 465 LYS A 278 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 27 CG CD CE NZ REMARK 470 GLU A 29 CG CD OE1 OE2 REMARK 470 GLN A 75 CG CD OE1 NE2 REMARK 470 ASP A 173 CG OD1 OD2 REMARK 470 ASP A 174 CG OD1 OD2 REMARK 470 SER A 175 OG REMARK 470 SER A 188 OG REMARK 470 SER A 200 OG REMARK 470 HIS A 220 CG ND1 CD2 CE1 NE2 REMARK 470 MET A 231 CG SD CE REMARK 470 ARG A 239 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 241 CG CD CE NZ REMARK 470 LYS A 246 CG CD CE NZ REMARK 470 VAL A 247 CG1 CG2 REMARK 470 ARG A 248 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 258 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 259 CG CD CE NZ REMARK 470 LYS A 260 CG CD CE NZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 137 NE CZ NH1 NH2 REMARK 480 LYS A 139 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 81 55.43 -100.24 REMARK 500 ASN A 120 18.63 54.77 REMARK 500 LYS A 140 87.97 -154.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SFG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2GIP RELATED DB: PDB REMARK 900 STRUCTURE OF E. COLI DNA ADENINE METHYLTRANSFERASE (DAM) REMARK 900 RELATED ID: 2ORE RELATED DB: PDB REMARK 900 BINARY STRUCTURE OF E.COLI DAM REMARK 900 RELATED ID: 4RTK RELATED DB: PDB REMARK 900 RELATED ID: 4RTL RELATED DB: PDB REMARK 900 RELATED ID: 4RTM RELATED DB: PDB REMARK 900 RELATED ID: 4RTN RELATED DB: PDB REMARK 900 RELATED ID: 4RTO RELATED DB: PDB REMARK 900 RELATED ID: 4RTP RELATED DB: PDB REMARK 900 RELATED ID: 4RTQ RELATED DB: PDB REMARK 900 RELATED ID: 4RTR RELATED DB: PDB REMARK 900 RELATED ID: 4RTS RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 AUTHOR STATES THAT RESIDUES 175 WERE MODELED AS SER INSTEAD OF ALA REMARK 999 BECAUSE OF EXTRA DENSITY. DBREF 4RTJ A 1 278 UNP H0Q7C9 H0Q7C9_ECOLI 1 278 DBREF 4RTJ F 1 12 PDB 4RTJ 4RTJ 1 12 DBREF 4RTJ G 1 12 PDB 4RTJ 4RTJ 1 12 SEQADV 4RTJ MET A -19 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTJ GLY A -18 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTJ SER A -17 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTJ SER A -16 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTJ HIS A -15 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTJ HIS A -14 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTJ HIS A -13 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTJ HIS A -12 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTJ HIS A -11 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTJ HIS A -10 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTJ SER A -9 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTJ SER A -8 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTJ GLY A -7 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTJ LEU A -6 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTJ VAL A -5 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTJ PRO A -4 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTJ ARG A -3 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTJ GLY A -2 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTJ SER A -1 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTJ HIS A 0 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTJ SER A 175 UNP H0Q7C9 ALA 175 SEE REMARK 999 SEQRES 1 A 298 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 298 LEU VAL PRO ARG GLY SER HIS MET LYS LYS ASN ARG ALA SEQRES 3 A 298 PHE LEU LYS TRP ALA GLY GLY LYS TYR PRO LEU LEU ASP SEQRES 4 A 298 ASP ILE LYS ARG HIS LEU PRO LYS GLY GLU CYS LEU VAL SEQRES 5 A 298 GLU PRO PHE VAL GLY ALA GLY SER VAL PHE LEU ASN THR SEQRES 6 A 298 ASP PHE SER ARG TYR ILE LEU ALA ASP ILE ASN SER ASP SEQRES 7 A 298 LEU ILE SER LEU TYR ASN ILE VAL LYS MET ARG THR ASP SEQRES 8 A 298 GLU TYR VAL GLN ALA ALA ARG GLU LEU PHE VAL PRO GLU SEQRES 9 A 298 THR ASN CYS ALA GLU VAL TYR TYR GLN PHE ARG GLU GLU SEQRES 10 A 298 PHE ASN LYS SER GLN ASP PRO PHE ARG ARG ALA VAL LEU SEQRES 11 A 298 PHE LEU TYR LEU ASN ARG TYR GLY TYR ASN GLY LEU CYS SEQRES 12 A 298 ARG TYR ASN LEU ARG GLY GLU PHE ASN VAL PRO PHE GLY SEQRES 13 A 298 ARG TYR LYS LYS PRO TYR PHE PRO GLU ALA GLU LEU TYR SEQRES 14 A 298 HIS PHE ALA GLU LYS ALA GLN ASN ALA PHE PHE TYR CYS SEQRES 15 A 298 GLU SER TYR ALA ASP SER MET ALA ARG ALA ASP ASP SER SEQRES 16 A 298 SER VAL VAL TYR CYS ASP PRO PRO TYR ALA PRO LEU SER SEQRES 17 A 298 ALA THR ALA ASN PHE THR ALA TYR HIS THR ASN SER PHE SEQRES 18 A 298 THR LEU GLU GLN GLN ALA HIS LEU ALA GLU ILE ALA GLU SEQRES 19 A 298 GLY LEU VAL GLU ARG HIS ILE PRO VAL LEU ILE SER ASN SEQRES 20 A 298 HIS ASP THR MET LEU THR ARG GLU TRP TYR GLN ARG ALA SEQRES 21 A 298 LYS LEU HIS VAL VAL LYS VAL ARG ARG SER ILE SER SER SEQRES 22 A 298 ASN GLY GLY THR ARG LYS LYS VAL ASP GLU LEU LEU ALA SEQRES 23 A 298 LEU TYR LYS PRO GLY VAL VAL SER PRO ALA LYS LYS SEQRES 1 F 12 DT DC DT DA DG DA DT DC DT DA DG DA SEQRES 1 G 12 DT DC DT DA DG DA DT DC DT DA DG DA HET SFG A 301 27 HET EDO A 302 4 HETNAM SFG SINEFUNGIN HETNAM EDO 1,2-ETHANEDIOL HETSYN SFG ADENOSYL-ORNITHINE HETSYN EDO ETHYLENE GLYCOL FORMUL 4 SFG C15 H23 N7 O5 FORMUL 5 EDO C2 H6 O2 FORMUL 6 HOH *97(H2 O) HELIX 1 1 LEU A 17 LEU A 25 1 9 HELIX 2 2 GLY A 39 ASN A 44 1 6 HELIX 3 3 ASN A 56 ARG A 69 1 14 HELIX 4 4 ARG A 69 GLU A 79 1 11 HELIX 5 5 LEU A 80 PHE A 81 5 2 HELIX 6 6 VAL A 82 ASN A 86 5 5 HELIX 7 7 CYS A 87 SER A 101 1 15 HELIX 8 8 ASP A 103 GLY A 118 1 16 HELIX 9 9 TYR A 119 LEU A 122 5 4 HELIX 10 10 PRO A 144 GLN A 156 1 13 HELIX 11 11 SER A 164 ALA A 170 1 7 HELIX 12 12 THR A 202 ARG A 219 1 18 HELIX 13 13 THR A 230 TYR A 237 1 8 SHEET 1 A 7 ALA A 158 CYS A 162 0 SHEET 2 A 7 ARG A 49 ASP A 54 1 N LEU A 52 O PHE A 159 SHEET 3 A 7 CYS A 30 GLU A 33 1 N GLU A 33 O ALA A 53 SHEET 4 A 7 SER A 176 CYS A 180 1 O VAL A 177 N VAL A 32 SHEET 5 A 7 VAL A 223 HIS A 228 1 O LEU A 224 N VAL A 178 SHEET 6 A 7 GLU A 263 TYR A 268 -1 O ALA A 266 N ILE A 225 SHEET 7 A 7 LYS A 241 VAL A 245 -1 N VAL A 245 O GLU A 263 SITE 1 AC1 18 TRP A 10 ALA A 11 GLY A 12 LYS A 14 SITE 2 AC1 18 PRO A 34 PHE A 35 VAL A 36 ALA A 38 SITE 3 AC1 18 GLY A 39 SER A 40 ASP A 54 ILE A 55 SITE 4 AC1 18 SER A 164 TYR A 165 ASP A 181 HOH A 409 SITE 5 AC1 18 HOH A 414 HOH A 437 SITE 1 AC2 3 ARG A 95 GLU A 130 DA G 10 CRYST1 36.367 63.114 145.043 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027497 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015844 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006895 0.00000