PDB Short entry for 4TPG HEADER MEMBRANE PROTEIN 07-JUN-14 4TPG TITLE SELECTIVITY MECHANISM OF A BACTERIAL HOMOLOGUE OF THE HUMAN DRUG TITLE 2 PEPTIDE TRANSPORTERS PEPT1 AND PEPT2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTON:OLIGOPEPTIDE SYMPORTER POT FAMILY; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: A SECONDARY ACTIVE PEPTIDE TRANSPORTER IN COMPLEX WITH A COMPND 5 TRIPEPTIDE AYA.; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: ALA-L-3-BR-TYR-ALA; COMPND 9 CHAIN: E; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHEWANELLA ONEIDENSIS MR-1; SOURCE 3 ORGANISM_TAXID: 211586; SOURCE 4 GENE: SO_1277; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 10 ORGANISM_TAXID: 32630 KEYWDS MEMBRANE PROTEIN, COMPLEX, SECONDARY ACTIVE TRANSPORTER EXPDTA X-RAY DIFFRACTION AUTHOR F.GUETTOU,E.M.QUISTGAARD,M.RABA,P.MOBERG,C.LOW,P.NORDLUND REVDAT 7 20-DEC-23 4TPG 1 REMARK REVDAT 6 13-SEP-17 4TPG 1 REMARK REVDAT 5 17-DEC-14 4TPG 1 REMARK REVDAT 4 27-AUG-14 4TPG 1 REMARK REVDAT 3 13-AUG-14 4TPG 1 JRNL REVDAT 2 06-AUG-14 4TPG 1 AUTHOR JRNL REVDAT 1 09-JUL-14 4TPG 0 JRNL AUTH F.GUETTOU,E.M.QUISTGAARD,M.RABA,P.MOBERG,C.LOW,P.NORDLUND JRNL TITL SELECTIVITY MECHANISM OF A BACTERIAL HOMOLOG OF THE HUMAN JRNL TITL 2 DRUG-PEPTIDE TRANSPORTERS PEPT1 AND PEPT2. JRNL REF NAT.STRUCT.MOL.BIOL. V. 21 728 2014 JRNL REFN ESSN 1545-9985 JRNL PMID 25064511 JRNL DOI 10.1038/NSMB.2860 REMARK 2 REMARK 2 RESOLUTION. 3.91 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.91 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 4.01 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 16668 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.262 REMARK 3 R VALUE (WORKING SET) : 0.261 REMARK 3 FREE R VALUE : 0.290 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 843 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 0.0000 - 7.0694 1.00 2920 130 0.2357 0.2548 REMARK 3 2 7.0694 - 5.6239 1.00 2788 132 0.0000 0.0000 REMARK 3 3 5.6239 - 4.9167 1.00 2711 162 0.2412 0.2688 REMARK 3 4 4.9167 - 4.4688 1.00 2744 162 0.2513 0.3211 REMARK 3 5 4.4688 - 4.1494 1.00 2688 148 0.2975 0.3534 REMARK 3 6 4.1494 - 3.9053 0.73 1974 109 0.3471 0.3555 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.550 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.800 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 7215 REMARK 3 ANGLE : 0.851 9835 REMARK 3 CHIRALITY : 0.029 1138 REMARK 3 PLANARITY : 0.004 1184 REMARK 3 DIHEDRAL : 14.130 2472 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 39.9504 171.7102 231.3058 REMARK 3 T TENSOR REMARK 3 T11: 0.6912 T22: 0.6867 REMARK 3 T33: 0.7096 T12: 0.0929 REMARK 3 T13: -0.3361 T23: -0.0660 REMARK 3 L TENSOR REMARK 3 L11: 0.5509 L22: 3.2498 REMARK 3 L33: 1.8978 L12: 0.8414 REMARK 3 L13: -0.7197 L23: 0.1652 REMARK 3 S TENSOR REMARK 3 S11: 0.0936 S12: 0.2242 S13: -0.2064 REMARK 3 S21: -0.4091 S22: -0.0372 S23: -0.2465 REMARK 3 S31: -0.1304 S32: 0.1851 S33: 0.0063 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 24.7379 124.7789 237.0942 REMARK 3 T TENSOR REMARK 3 T11: 0.7528 T22: 0.6659 REMARK 3 T33: 0.7142 T12: 0.0741 REMARK 3 T13: -0.3197 T23: -0.0392 REMARK 3 L TENSOR REMARK 3 L11: 1.1228 L22: 2.5801 REMARK 3 L33: 1.4266 L12: 0.1971 REMARK 3 L13: 1.0707 L23: -0.7174 REMARK 3 S TENSOR REMARK 3 S11: 0.1146 S12: -0.0593 S13: -0.0723 REMARK 3 S21: -0.4239 S22: 0.0040 S23: 0.3894 REMARK 3 S31: 0.1541 S32: -0.2707 S33: 0.0708 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 52.30 PERCENT OF COLLECTED REFLECTIONS COLLECTED USED IN REMARK 3 REFINEMENT. REMARK 3 REMARK 3 THE CRYSTAL SUFFERED SEVERE RADIATION DAMAGE AND "DIED" DURING REMARK 3 COLLECTION. AUTHORS HAD TO CUT THE DATA PRIOR TO REFINEMENT DUES REMARK 3 TO BAD QUALITY. THEY ALSO USED THE ONLINE ANISOTROPY SERVER (HTTP:/ REMARK 3 /SERVICES.MBI.UCLA.EDU/ANISOSCALE/) FOR DATA SCALING. REMARK 4 REMARK 4 4TPG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-JUN-14. REMARK 100 THE DEPOSITION ID IS D_1000202018. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 1 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31871 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.910 REMARK 200 RESOLUTION RANGE LOW (A) : 4.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.6 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.1400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.91 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 4.01 REMARK 200 COMPLETENESS FOR SHELL (%) : 39.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.180 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 4LEP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M PHOSPHATE CITRATE, 36% PEG300, REMARK 280 0.12 M ZNCL2, PH 4.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 41.44500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 103.41500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.04500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 103.41500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.44500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.04500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 REMARK 400 THE 5,6-DIHYDRO-BENZO[H]CINNOLIN-3-YLAMINE IS POLYPEPTIDE, A MEMBER REMARK 400 OF TRANSPORT ACTIVATOR CLASS. REMARK 400 REMARK 400 GROUP: 1 REMARK 400 NAME: 5,6-DIHYDRO-BENZO[H]CINNOLIN-3-YLAMINE REMARK 400 CHAIN: E REMARK 400 COMPONENT_1: PEPTIDE LIKE POLYMER REMARK 400 DESCRIPTION: NULL REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 LEU A 3 REMARK 465 GLY A 4 REMARK 465 THR A 5 REMARK 465 ASN A 6 REMARK 465 GLN A 7 REMARK 465 GLY A 134 REMARK 465 ASP A 135 REMARK 465 ASP A 136 REMARK 465 THR A 265 REMARK 465 SER A 266 REMARK 465 GLU A 267 REMARK 465 SER A 343 REMARK 465 TYR A 344 REMARK 465 SER A 345 REMARK 465 TRP A 346 REMARK 465 ALA A 347 REMARK 465 GLY A 348 REMARK 465 ARG A 349 REMARK 465 ASN A 350 REMARK 465 ASN A 351 REMARK 465 LYS A 352 REMARK 465 ASP A 353 REMARK 465 PHE A 354 REMARK 465 SER A 355 REMARK 465 VAL A 417 REMARK 465 PRO A 418 REMARK 465 ALA A 419 REMARK 465 ARG A 420 REMARK 465 MET A 421 REMARK 465 GLY A 422 REMARK 465 GLY A 423 REMARK 465 GLU A 493 REMARK 465 SER A 494 REMARK 465 HIS A 495 REMARK 465 HIS A 496 REMARK 465 ALA A 497 REMARK 465 HIS A 498 REMARK 465 SER A 499 REMARK 465 SER A 500 REMARK 465 ILE A 501 REMARK 465 GLU A 502 REMARK 465 ASN A 503 REMARK 465 ASN A 504 REMARK 465 ALA A 505 REMARK 465 ALA A 506 REMARK 465 ALA A 507 REMARK 465 SER A 508 REMARK 465 LEU A 509 REMARK 465 ARG A 510 REMARK 465 ASP A 511 REMARK 465 VAL A 512 REMARK 465 LYS A 513 REMARK 465 ALA A 514 REMARK 465 GLU A 515 REMARK 465 GLN A 516 REMARK 465 ALA A 517 REMARK 465 GLU A 518 REMARK 465 ASN A 519 REMARK 465 LEU A 520 REMARK 465 TYR A 521 REMARK 465 PHE A 522 REMARK 465 GLN A 523 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 LEU B 3 REMARK 465 GLY B 4 REMARK 465 THR B 5 REMARK 465 ASN B 6 REMARK 465 GLN B 7 REMARK 465 GLY B 134 REMARK 465 ASP B 135 REMARK 465 ASP B 136 REMARK 465 THR B 265 REMARK 465 SER B 266 REMARK 465 GLU B 267 REMARK 465 SER B 343 REMARK 465 TYR B 344 REMARK 465 SER B 345 REMARK 465 TRP B 346 REMARK 465 ALA B 347 REMARK 465 GLY B 348 REMARK 465 ARG B 349 REMARK 465 ASN B 350 REMARK 465 ASN B 351 REMARK 465 LYS B 352 REMARK 465 ASP B 353 REMARK 465 PHE B 354 REMARK 465 SER B 355 REMARK 465 VAL B 417 REMARK 465 PRO B 418 REMARK 465 ALA B 419 REMARK 465 ARG B 420 REMARK 465 MET B 421 REMARK 465 GLY B 422 REMARK 465 GLY B 423 REMARK 465 GLU B 493 REMARK 465 SER B 494 REMARK 465 HIS B 495 REMARK 465 HIS B 496 REMARK 465 ALA B 497 REMARK 465 HIS B 498 REMARK 465 SER B 499 REMARK 465 SER B 500 REMARK 465 ILE B 501 REMARK 465 GLU B 502 REMARK 465 ASN B 503 REMARK 465 ASN B 504 REMARK 465 ALA B 505 REMARK 465 ALA B 506 REMARK 465 ALA B 507 REMARK 465 SER B 508 REMARK 465 LEU B 509 REMARK 465 ARG B 510 REMARK 465 ASP B 511 REMARK 465 VAL B 512 REMARK 465 LYS B 513 REMARK 465 ALA B 514 REMARK 465 GLU B 515 REMARK 465 GLN B 516 REMARK 465 ALA B 517 REMARK 465 GLU B 518 REMARK 465 ASN B 519 REMARK 465 LEU B 520 REMARK 465 TYR B 521 REMARK 465 PHE B 522 REMARK 465 GLN B 523 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 174 CG OD1 ND2 REMARK 470 GLU A 175 CG CD OE1 OE2 REMARK 470 PHE A 176 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 201 CG CD CE NZ REMARK 470 SER A 202 OG REMARK 470 LEU A 203 CG CD1 CD2 REMARK 470 ASN A 205 CG OD1 ND2 REMARK 470 TYR A 206 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 SER A 208 OG REMARK 470 GLU A 209 CG CD OE1 OE2 REMARK 470 PRO A 210 CG CD REMARK 470 ASP A 211 CG OD1 OD2 REMARK 470 THR A 212 OG1 CG2 REMARK 470 ARG A 213 CG CD NE CZ NH1 NH2 REMARK 470 PRO A 214 CG CD REMARK 470 VAL A 215 CG1 CG2 REMARK 470 ARG A 264 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 270 CG CD OE1 OE2 REMARK 470 LEU A 410 CG CD1 CD2 REMARK 470 TYR A 416 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 MET A 425 CG SD CE REMARK 470 MET A 426 CG SD CE REMARK 470 ASN B 174 CG OD1 ND2 REMARK 470 GLU B 175 CG CD OE1 OE2 REMARK 470 PHE B 176 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 201 CG CD CE NZ REMARK 470 SER B 202 OG REMARK 470 LEU B 203 CG CD1 CD2 REMARK 470 ASN B 205 CG OD1 ND2 REMARK 470 TYR B 206 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 SER B 208 OG REMARK 470 GLU B 209 CG CD OE1 OE2 REMARK 470 PRO B 210 CG CD REMARK 470 ASP B 211 CG OD1 OD2 REMARK 470 THR B 212 OG1 CG2 REMARK 470 ARG B 213 CG CD NE CZ NH1 NH2 REMARK 470 PRO B 214 CG CD REMARK 470 VAL B 215 CG1 CG2 REMARK 470 ARG B 264 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 270 CG CD OE1 OE2 REMARK 470 LEU B 410 CG CD1 CD2 REMARK 470 TYR B 416 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 MET B 425 CG SD CE REMARK 470 MET B 426 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 75 -65.18 -130.07 REMARK 500 ASN A 174 -59.29 57.79 REMARK 500 PHE A 176 -72.26 -76.96 REMARK 500 MET A 199 22.99 -143.18 REMARK 500 HIS A 200 -76.54 -68.91 REMARK 500 ASN A 205 -82.12 49.86 REMARK 500 SER A 208 150.29 81.99 REMARK 500 THR A 296 -93.18 -115.24 REMARK 500 PHE A 313 102.30 -34.66 REMARK 500 THR A 315 -162.14 -111.01 REMARK 500 TRP A 318 -127.56 -119.58 REMARK 500 SER A 387 -73.36 -179.95 REMARK 500 SER A 388 -71.30 62.91 REMARK 500 VAL A 405 56.07 -110.43 REMARK 500 ALA A 414 82.38 -66.42 REMARK 500 ILE B 75 -65.09 -128.59 REMARK 500 ASN B 174 -60.24 58.22 REMARK 500 PHE B 176 -72.19 -77.14 REMARK 500 MET B 199 22.47 -142.64 REMARK 500 HIS B 200 -76.40 -67.42 REMARK 500 ASN B 205 -83.73 49.73 REMARK 500 SER B 208 148.54 80.48 REMARK 500 THR B 296 -93.60 -114.75 REMARK 500 PHE B 313 102.23 -36.38 REMARK 500 THR B 315 -164.28 -111.78 REMARK 500 TRP B 318 -127.77 -119.53 REMARK 500 SER B 387 -69.28 -177.64 REMARK 500 SER B 388 -71.59 62.96 REMARK 500 VAL B 405 56.86 -109.60 REMARK 500 ALA B 414 81.35 -66.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LMT A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LMT B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for chain E REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4TPJ RELATED DB: PDB REMARK 900 RELATED ID: 4TPH RELATED DB: PDB DBREF 4TPG A 1 516 UNP Q8EHE6 Q8EHE6_SHEON 1 516 DBREF 4TPG B 1 516 UNP Q8EHE6 Q8EHE6_SHEON 1 516 DBREF 4TPG E 1 3 PDB 4TPG 4TPG 1 3 SEQADV 4TPG ALA A 517 UNP Q8EHE6 EXPRESSION TAG SEQADV 4TPG GLU A 518 UNP Q8EHE6 EXPRESSION TAG SEQADV 4TPG ASN A 519 UNP Q8EHE6 EXPRESSION TAG SEQADV 4TPG LEU A 520 UNP Q8EHE6 EXPRESSION TAG SEQADV 4TPG TYR A 521 UNP Q8EHE6 EXPRESSION TAG SEQADV 4TPG PHE A 522 UNP Q8EHE6 EXPRESSION TAG SEQADV 4TPG GLN A 523 UNP Q8EHE6 EXPRESSION TAG SEQADV 4TPG ALA B 517 UNP Q8EHE6 EXPRESSION TAG SEQADV 4TPG GLU B 518 UNP Q8EHE6 EXPRESSION TAG SEQADV 4TPG ASN B 519 UNP Q8EHE6 EXPRESSION TAG SEQADV 4TPG LEU B 520 UNP Q8EHE6 EXPRESSION TAG SEQADV 4TPG TYR B 521 UNP Q8EHE6 EXPRESSION TAG SEQADV 4TPG PHE B 522 UNP Q8EHE6 EXPRESSION TAG SEQADV 4TPG GLN B 523 UNP Q8EHE6 EXPRESSION TAG SEQRES 1 A 523 MET THR LEU GLY THR ASN GLN VAL SER LYS THR HIS SER SEQRES 2 A 523 PHE MET THR VAL SER LEU ILE GLU LEU TRP GLU ARG PHE SEQRES 3 A 523 GLY TYR TYR GLY MET GLN ALA LEU ILE VAL TYR PHE MET SEQRES 4 A 523 VAL GLN ARG LEU GLY PHE ASP ASP SER ARG ALA ASN LEU SEQRES 5 A 523 VAL TRP SER ALA CYS ALA ALA LEU ILE TYR VAL SER PRO SEQRES 6 A 523 ALA ILE GLY GLY TRP VAL GLY ASP LYS ILE LEU GLY THR SEQRES 7 A 523 LYS ARG THR MET LEU LEU GLY ALA GLY ILE LEU SER VAL SEQRES 8 A 523 GLY TYR ALA LEU MET THR VAL PRO THR GLU ASN THR TRP SEQRES 9 A 523 PHE MET PHE SER ALA LEU GLY VAL ILE VAL VAL GLY ASN SEQRES 10 A 523 GLY LEU PHE LYS PRO ASN ALA GLY ASN LEU VAL ARG LYS SEQRES 11 A 523 ILE TYR GLU GLY ASP ASP SER LYS ILE ASP SER ALA PHE SEQRES 12 A 523 THR ILE TYR TYR MET ALA VAL ASN VAL GLY SER THR PHE SEQRES 13 A 523 SER MET LEU LEU THR PRO TRP ILE LYS ASP TYR VAL ASN SEQRES 14 A 523 ALA GLN TYR GLY ASN GLU PHE GLY TRP HIS ALA ALA PHE SEQRES 15 A 523 ALA VAL CYS CYS VAL GLY ILE LEU VAL GLY LEU GLY ASN SEQRES 16 A 523 TYR ALA LEU MET HIS LYS SER LEU ALA ASN TYR GLY SER SEQRES 17 A 523 GLU PRO ASP THR ARG PRO VAL ASN LYS LYS SER LEU ALA SEQRES 18 A 523 ILE VAL LEU ALA LEU ALA ALA LEU SER VAL VAL ALA SER SEQRES 19 A 523 ALA ILE ILE LEU GLU TYR GLU ASP VAL ALA ARG VAL PHE SEQRES 20 A 523 VAL TYR ALA ALA GLY VAL ALA VAL LEU GLY ILE PHE PHE SEQRES 21 A 523 HIS LEU ILE ARG THR SER GLU PRO SER GLU ARG ALA GLY SEQRES 22 A 523 LEU ILE ALA ALA LEU ILE LEU THR VAL GLN THR VAL PHE SEQRES 23 A 523 PHE PHE ILE PHE TYR GLN GLN MET SER THR SER LEU ALA SEQRES 24 A 523 LEU PHE ALA LEU ARG ASN VAL ASP TRP ASP PHE GLN VAL SEQRES 25 A 523 PHE GLY THR HIS LEU TRP THR TRP SER PRO ALA GLN PHE SEQRES 26 A 523 GLN ALA LEU ASN PRO ILE TRP ILE MET VAL LEU SER PRO SEQRES 27 A 523 VAL LEU ALA TRP SER TYR SER TRP ALA GLY ARG ASN ASN SEQRES 28 A 523 LYS ASP PHE SER ILE ALA ALA LYS PHE ALA LEU GLY PHE SEQRES 29 A 523 ALA VAL VAL ALA ILE GLY PHE PHE ILE TYR GLY PHE ALA SEQRES 30 A 523 GLY GLN PHE ALA VAL ASN GLY LYS THR SER SER TRP VAL SEQRES 31 A 523 MET ILE TRP GLY TYR ALA SER TYR SER LEU GLY GLU LEU SEQRES 32 A 523 LEU VAL SER GLY LEU GLY LEU ALA MET ILE ALA ARG TYR SEQRES 33 A 523 VAL PRO ALA ARG MET GLY GLY PHE MET MET GLY ALA TYR SEQRES 34 A 523 PHE VAL ALA SER GLY ILE SER GLN TYR LEU GLY GLY VAL SEQRES 35 A 523 VAL ALA ASN PHE ALA SER VAL PRO GLN ASP LEU VAL ASP SEQRES 36 A 523 PRO LEU GLN THR LEU PRO VAL TYR THR ASN LEU PHE ASN SEQRES 37 A 523 LYS LEU GLY VAL ALA ALA VAL VAL CYS THR ILE ILE ALA SEQRES 38 A 523 LEU ALA VAL LEU PRO LEU MET ARG ARG LEU THR GLU SER SEQRES 39 A 523 HIS HIS ALA HIS SER SER ILE GLU ASN ASN ALA ALA ALA SEQRES 40 A 523 SER LEU ARG ASP VAL LYS ALA GLU GLN ALA GLU ASN LEU SEQRES 41 A 523 TYR PHE GLN SEQRES 1 B 523 MET THR LEU GLY THR ASN GLN VAL SER LYS THR HIS SER SEQRES 2 B 523 PHE MET THR VAL SER LEU ILE GLU LEU TRP GLU ARG PHE SEQRES 3 B 523 GLY TYR TYR GLY MET GLN ALA LEU ILE VAL TYR PHE MET SEQRES 4 B 523 VAL GLN ARG LEU GLY PHE ASP ASP SER ARG ALA ASN LEU SEQRES 5 B 523 VAL TRP SER ALA CYS ALA ALA LEU ILE TYR VAL SER PRO SEQRES 6 B 523 ALA ILE GLY GLY TRP VAL GLY ASP LYS ILE LEU GLY THR SEQRES 7 B 523 LYS ARG THR MET LEU LEU GLY ALA GLY ILE LEU SER VAL SEQRES 8 B 523 GLY TYR ALA LEU MET THR VAL PRO THR GLU ASN THR TRP SEQRES 9 B 523 PHE MET PHE SER ALA LEU GLY VAL ILE VAL VAL GLY ASN SEQRES 10 B 523 GLY LEU PHE LYS PRO ASN ALA GLY ASN LEU VAL ARG LYS SEQRES 11 B 523 ILE TYR GLU GLY ASP ASP SER LYS ILE ASP SER ALA PHE SEQRES 12 B 523 THR ILE TYR TYR MET ALA VAL ASN VAL GLY SER THR PHE SEQRES 13 B 523 SER MET LEU LEU THR PRO TRP ILE LYS ASP TYR VAL ASN SEQRES 14 B 523 ALA GLN TYR GLY ASN GLU PHE GLY TRP HIS ALA ALA PHE SEQRES 15 B 523 ALA VAL CYS CYS VAL GLY ILE LEU VAL GLY LEU GLY ASN SEQRES 16 B 523 TYR ALA LEU MET HIS LYS SER LEU ALA ASN TYR GLY SER SEQRES 17 B 523 GLU PRO ASP THR ARG PRO VAL ASN LYS LYS SER LEU ALA SEQRES 18 B 523 ILE VAL LEU ALA LEU ALA ALA LEU SER VAL VAL ALA SER SEQRES 19 B 523 ALA ILE ILE LEU GLU TYR GLU ASP VAL ALA ARG VAL PHE SEQRES 20 B 523 VAL TYR ALA ALA GLY VAL ALA VAL LEU GLY ILE PHE PHE SEQRES 21 B 523 HIS LEU ILE ARG THR SER GLU PRO SER GLU ARG ALA GLY SEQRES 22 B 523 LEU ILE ALA ALA LEU ILE LEU THR VAL GLN THR VAL PHE SEQRES 23 B 523 PHE PHE ILE PHE TYR GLN GLN MET SER THR SER LEU ALA SEQRES 24 B 523 LEU PHE ALA LEU ARG ASN VAL ASP TRP ASP PHE GLN VAL SEQRES 25 B 523 PHE GLY THR HIS LEU TRP THR TRP SER PRO ALA GLN PHE SEQRES 26 B 523 GLN ALA LEU ASN PRO ILE TRP ILE MET VAL LEU SER PRO SEQRES 27 B 523 VAL LEU ALA TRP SER TYR SER TRP ALA GLY ARG ASN ASN SEQRES 28 B 523 LYS ASP PHE SER ILE ALA ALA LYS PHE ALA LEU GLY PHE SEQRES 29 B 523 ALA VAL VAL ALA ILE GLY PHE PHE ILE TYR GLY PHE ALA SEQRES 30 B 523 GLY GLN PHE ALA VAL ASN GLY LYS THR SER SER TRP VAL SEQRES 31 B 523 MET ILE TRP GLY TYR ALA SER TYR SER LEU GLY GLU LEU SEQRES 32 B 523 LEU VAL SER GLY LEU GLY LEU ALA MET ILE ALA ARG TYR SEQRES 33 B 523 VAL PRO ALA ARG MET GLY GLY PHE MET MET GLY ALA TYR SEQRES 34 B 523 PHE VAL ALA SER GLY ILE SER GLN TYR LEU GLY GLY VAL SEQRES 35 B 523 VAL ALA ASN PHE ALA SER VAL PRO GLN ASP LEU VAL ASP SEQRES 36 B 523 PRO LEU GLN THR LEU PRO VAL TYR THR ASN LEU PHE ASN SEQRES 37 B 523 LYS LEU GLY VAL ALA ALA VAL VAL CYS THR ILE ILE ALA SEQRES 38 B 523 LEU ALA VAL LEU PRO LEU MET ARG ARG LEU THR GLU SER SEQRES 39 B 523 HIS HIS ALA HIS SER SER ILE GLU ASN ASN ALA ALA ALA SEQRES 40 B 523 SER LEU ARG ASP VAL LYS ALA GLU GLN ALA GLU ASN LEU SEQRES 41 B 523 TYR PHE GLN SEQRES 1 E 3 ALA DBY ALA HET DBY E 2 14 HET ZN A 601 1 HET LMT A 602 35 HET LMT B 601 35 HETNAM DBY 3,5 DIBROMOTYROSINE HETNAM ZN ZINC ION HETNAM LMT DODECYL-BETA-D-MALTOSIDE FORMUL 3 DBY C9 H9 BR2 N O3 FORMUL 4 ZN ZN 2+ FORMUL 5 LMT 2(C24 H46 O11) HELIX 1 AA1 SER A 9 ARG A 42 1 34 HELIX 2 AA2 ASP A 46 SER A 64 1 19 HELIX 3 AA3 SER A 64 ILE A 75 1 12 HELIX 4 AA4 GLY A 77 VAL A 98 1 22 HELIX 5 AA5 ASN A 102 TYR A 132 1 31 HELIX 6 AA6 LYS A 138 TYR A 172 1 35 HELIX 7 AA7 GLY A 177 LEU A 198 1 22 HELIX 8 AA8 MET A 199 ALA A 204 1 6 HELIX 9 AA9 ASN A 216 TYR A 240 1 25 HELIX 10 AB1 TYR A 240 ILE A 263 1 24 HELIX 11 AB2 GLU A 270 THR A 296 1 27 HELIX 12 AB3 THR A 296 ASN A 305 1 10 HELIX 13 AB4 SER A 321 GLN A 326 5 6 HELIX 14 AB5 ALA A 327 ALA A 341 1 15 HELIX 15 AB6 ALA A 357 PHE A 376 1 20 HELIX 16 AB7 SER A 388 VAL A 405 1 18 HELIX 17 AB8 MET A 425 ASN A 445 1 21 HELIX 18 AB9 PHE A 446 SER A 448 5 3 HELIX 19 AC1 ASP A 455 VAL A 484 1 30 HELIX 20 AC2 LEU A 485 THR A 492 1 8 HELIX 21 AC3 SER B 9 GLN B 41 1 33 HELIX 22 AC4 ASP B 46 SER B 64 1 19 HELIX 23 AC5 SER B 64 ILE B 75 1 12 HELIX 24 AC6 GLY B 77 VAL B 98 1 22 HELIX 25 AC7 ASN B 102 TYR B 132 1 31 HELIX 26 AC8 LYS B 138 TYR B 172 1 35 HELIX 27 AC9 GLY B 177 LEU B 198 1 22 HELIX 28 AD1 MET B 199 ALA B 204 1 6 HELIX 29 AD2 ASN B 216 TYR B 240 1 25 HELIX 30 AD3 TYR B 240 ARG B 264 1 25 HELIX 31 AD4 GLU B 270 GLN B 293 1 24 HELIX 32 AD5 THR B 296 VAL B 306 1 11 HELIX 33 AD6 SER B 321 GLN B 326 5 6 HELIX 34 AD7 ALA B 327 ALA B 341 1 15 HELIX 35 AD8 ALA B 357 PHE B 376 1 20 HELIX 36 AD9 SER B 388 VAL B 405 1 18 HELIX 37 AE1 GLY B 409 ALA B 414 1 6 HELIX 38 AE2 MET B 425 ASN B 445 1 21 HELIX 39 AE3 PHE B 446 SER B 448 5 3 HELIX 40 AE4 ASP B 455 VAL B 484 1 30 HELIX 41 AE5 LEU B 485 THR B 492 1 8 LINK C ALA E 1 N DBY E 2 1555 1555 1.44 LINK C DBY E 2 N ALA E 3 1555 1555 1.42 LINK ND2 ASN A 468 ZN ZN A 601 1555 1555 2.53 CISPEP 1 GLU A 175 PHE A 176 0 6.40 CISPEP 2 PHE A 313 GLY A 314 0 3.05 CISPEP 3 LEU A 317 TRP A 318 0 -9.72 CISPEP 4 GLU B 175 PHE B 176 0 6.28 CISPEP 5 PHE B 313 GLY B 314 0 3.15 CISPEP 6 LEU B 317 TRP B 318 0 -10.45 SITE 1 AC1 2 ASN A 468 ASN B 468 SITE 1 AC2 7 VAL A 152 PHE A 156 LEU A 159 TRP A 163 SITE 2 AC2 7 TRP A 318 THR A 319 GLN A 324 SITE 1 AC3 8 PHE B 156 LEU B 159 TRP B 163 ASP B 166 SITE 2 AC3 8 TRP B 318 THR B 319 SER B 321 GLN B 324 SITE 1 AC4 9 TYR A 29 TYR A 147 VAL A 150 ASN A 151 SITE 2 AC4 9 PHE A 288 ASN A 329 ARG A 25 TYR A 28 SITE 3 AC4 9 LYS A 121 CRYST1 82.890 108.090 206.830 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012064 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009252 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004835 0.00000