PDB Short entry for 4TS1 HEADER LIGASE (SYNTHETASE) 29-JUN-89 4TS1 TITLE CRYSTAL STRUCTURE OF A DELETION MUTANT OF A TYROSYL-T/RNA TITLE 2 SYNTHETASE COMPLEXED WITH TYROSINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSYL-TRNA SYNTHETASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 6.1.1.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 1422; SOURCE 4 EXPRESSION_SYSTEM_PLASMID: M13 KEYWDS LIGASE (SYNTHETASE) EXPDTA X-RAY DIFFRACTION AUTHOR P.BRICK,D.M.BLOW REVDAT 3 24-FEB-09 4TS1 1 VERSN REVDAT 2 01-APR-03 4TS1 1 JRNL REVDAT 1 15-OCT-89 4TS1 0 JRNL AUTH P.BRICK,D.M.BLOW JRNL TITL CRYSTAL STRUCTURE OF A DELETION MUTANT OF A JRNL TITL 2 TYROSYL-TRNA SYNTHETASE COMPLEXED WITH TYROSINE. JRNL REF J.MOL.BIOL. V. 194 287 1987 JRNL REFN ISSN 0022-2836 JRNL PMID 3612807 JRNL DOI 10.1016/0022-2836(87)90376-7 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.BRICK,T.N.BHAT,D.M.BLOW REMARK 1 TITL STRUCTURE OF TYROSYL-T/RNA SYNTHETASE REFINED AT REMARK 1 TITL 2 2.3 ANGSTROMS RESOLUTION. INTERACTION OF THE REMARK 1 TITL 3 ENZYME WITH THE TYROSYL ADENYLATE INTERMEDIATE REMARK 1 REF J.MOL.BIOL. V. 208 83 1989 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 2 REMARK 1 AUTH C.MONTEILHET,D.M.BLOW,P.BRICK REMARK 1 TITL INTERACTION OF CRYSTALLINE TYROSOL-T/RNA REMARK 1 TITL 2 SYNTHETASE WITH ADENOSINE, ADENOSINE REMARK 1 TITL 3 MONOPHOSPHATE, ADENOSINE TRIPHOSPHATE AND REMARK 1 TITL 4 PYROPHOSPHATE IN THE PRESENCE OF TYROSINOL REMARK 1 REF J.MOL.BIOL. V. 173 477 1984 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 3 REMARK 1 AUTH M.M.Y.WAYE,G.WINTER,A.J.WILKINSON,A.R.FERSHT REMARK 1 TITL DELETION MUTAGENESIS USING AN M13 SPLINT. THE REMARK 1 TITL 2 N-TERMINAL STRUCTURAL DOMAIN OF TYROSYL-T/RNA REMARK 1 TITL 3 SYNTHETASE (B. STEAROTHERMOPHILUS) CATALYSES THE REMARK 1 TITL 4 FORMATION OF TYROSYL ADENYLATE REMARK 1 REF EMBO J. V. 2 1827 1983 REMARK 1 REFN ISSN 0261-4189 REMARK 1 REFERENCE 4 REMARK 1 AUTH T.N.BHAT,D.M.BLOW,P.BRICK,J.NYBORG REMARK 1 TITL TYROSYL-T/RNA SYNTHETASE FORMS A REMARK 1 TITL 2 MONONUCLEOTIDE-BINDING FOLD REMARK 1 REF J.MOL.BIOL. V. 158 699 1982 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 5 REMARK 1 AUTH C.MONTEILHET,D.M.BLOW REMARK 1 TITL BINDING OF TYROSINE, ADENOSINE TRIPHOSPHATE AND REMARK 1 TITL 2 ANALOGUES TO CRYSTALLINE TYROSYL TRANSFER RNA REMARK 1 TITL 3 SYNTHETASE REMARK 1 REF J.MOL.BIOL. V. 122 407 1978 REMARK 1 REFN ISSN 0022-2836 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PROLSQ REMARK 3 AUTHORS : KONNERT,HENDRICKSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 25459 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4820 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 144 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.017 ; 0.020 REMARK 3 ANGLE DISTANCE (A) : 0.044 ; 0.030 REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : 0.057 ; 0.050 REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : 0.016 ; 0.020 REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : 0.170 ; 0.150 REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : 0.200 ; 0.500 REMARK 3 MULTIPLE TORSION (A) : 0.300 ; 0.500 REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 3.200 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 4.800 ; 2.250 REMARK 3 SIDE-CHAIN BOND (A**2) : 3.870 ; 1.500 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 5.790 ; 2.250 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4TS1 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.53000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: REMARK 300 THE TRANSFORMATION PROVIDED ON THE *MTRIX 1* RECORDS BELOW REMARK 300 YIELDS APPROXIMATE COORDINATES FOR RESIDUES 1-220 OF THE REMARK 300 *A* CHAIN WHEN APPLIED TO THE EQUIVALENT RESIDUES OF THE REMARK 300 *B* CHAIN. REMARK 300 REMARK 300 THE TRANSFORMATION PROVIDED ON THE *MTRIX 2* RECORDS BELOW REMARK 300 YIELDS APPROXIMATE COORDINATES FOR RESIDUES 221-313 OF THE REMARK 300 *A* CHAIN WHEN APPLIED TO THE EQUIVALENT RESIDUES OF THE REMARK 300 *B* CHAIN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 212 REMARK 465 ALA A 213 REMARK 465 GLU B 212 REMARK 465 ALA B 213 REMARK 465 GLN B 314 REMARK 465 ALA B 315 REMARK 465 ILE B 316 REMARK 465 ARG B 317 REMARK 465 TYR B 318 REMARK 465 ALA B 319 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CB CG SD CE REMARK 470 LYS A 83 CG CD CE NZ REMARK 470 ARG A 86 CD NE CZ NH1 NH2 REMARK 470 THR A 87 OG1 CG2 REMARK 470 LYS A 91 CD CE NZ REMARK 470 GLU A 92 CG CD OE1 OE2 REMARK 470 ARG A 100 CD NE CZ NH1 NH2 REMARK 470 GLU A 103 CG CD OE1 OE2 REMARK 470 GLU A 112 CG CD OE1 OE2 REMARK 470 ASP A 114 CB CG OD1 OD2 REMARK 470 GLN A 155 CG CD OE1 NE2 REMARK 470 ILE A 158 CG1 CG2 CD1 REMARK 470 GLU A 159 CG CD OE1 OE2 REMARK 470 ARG A 214 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 222 CG CD1 CD2 REMARK 470 LYS A 230 CD CE NZ REMARK 470 LYS A 233 CG CD CE NZ REMARK 470 THR A 234 OG1 CG2 REMARK 470 GLU A 235 CG CD OE1 OE2 REMARK 470 SER A 236 OG REMARK 470 GLU A 276 CD OE1 OE2 REMARK 470 GLN A 283 CG CD OE1 NE2 REMARK 470 ARG A 286 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 287 CD OE1 OE2 REMARK 470 GLU A 290 CG CD OE1 OE2 REMARK 470 LYS A 291 CG CD CE NZ REMARK 470 ARG A 292 CD NE CZ NH1 NH2 REMARK 470 LYS A 296 CD CE NZ REMARK 470 GLU A 310 CD OE1 OE2 REMARK 470 ARG A 313 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 314 CD OE1 NE2 REMARK 470 ARG A 317 CG CD NE CZ NH1 NH2 REMARK 470 MET B 1 CB CG SD CE REMARK 470 LYS B 83 CG CD CE NZ REMARK 470 SER B 84 OG REMARK 470 ARG B 86 CD NE CZ NH1 NH2 REMARK 470 LYS B 91 CD CE NZ REMARK 470 GLU B 92 CG CD OE1 OE2 REMARK 470 GLU B 103 CG CD OE1 OE2 REMARK 470 GLU B 112 CG CD OE1 OE2 REMARK 470 GLN B 155 CG CD OE1 NE2 REMARK 470 ILE B 158 CD1 REMARK 470 GLU B 159 CG CD OE1 OE2 REMARK 470 ARG B 214 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 222 CG CD1 CD2 REMARK 470 LYS B 230 CG CD CE NZ REMARK 470 LYS B 233 CG CD CE NZ REMARK 470 THR B 234 OG1 CG2 REMARK 470 GLU B 235 CG CD OE1 OE2 REMARK 470 LYS B 243 CD CE NZ REMARK 470 GLU B 276 CG CD OE1 OE2 REMARK 470 ARG B 286 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 287 CD OE1 OE2 REMARK 470 GLU B 290 CG CD OE1 OE2 REMARK 470 LYS B 291 CG CD CE NZ REMARK 470 GLU B 309 CG CD OE1 OE2 REMARK 470 GLU B 310 CG CD OE1 OE2 REMARK 470 ARG B 313 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ARG A 23 OD1 ASN A 27 1.91 REMARK 500 O GLY B 21 O HOH B 337 2.10 REMARK 500 NZ LYS A 275 OE1 GLU A 279 2.13 REMARK 500 OG1 THR A 17 O HOH A 380 2.15 REMARK 500 OG1 THR A 219 O HOH A 386 2.17 REMARK 500 O HIS A 142 NZ LYS A 208 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH1 ARG A 179 O TYR A 318 2556 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 287 CB GLU B 287 CG -0.121 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 10 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 ARG A 10 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ASP A 18 CB - CG - OD2 ANGL. DEV. = -7.9 DEGREES REMARK 500 ARG A 30 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 TYR A 34 CB - CG - CD2 ANGL. DEV. = 4.2 DEGREES REMARK 500 ASP A 42 CB - CG - OD1 ANGL. DEV. = 6.8 DEGREES REMARK 500 ARG A 56 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 56 NE - CZ - NH2 ANGL. DEV. = -7.8 DEGREES REMARK 500 ARG A 57 CD - NE - CZ ANGL. DEV. = 12.5 DEGREES REMARK 500 ARG A 64 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 LEU A 68 CB - CA - C ANGL. DEV. = 11.4 DEGREES REMARK 500 GLY A 70 C - N - CA ANGL. DEV. = 17.2 DEGREES REMARK 500 ASP A 78 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG A 107 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 PHE A 111 CB - CG - CD1 ANGL. DEV. = -4.3 DEGREES REMARK 500 ASP A 138 CB - CG - OD1 ANGL. DEV. = 9.9 DEGREES REMARK 500 MET A 149 CA - CB - CG ANGL. DEV. = 15.6 DEGREES REMARK 500 GLU A 152 CG - CD - OE1 ANGL. DEV. = 14.3 DEGREES REMARK 500 ARG A 157 CD - NE - CZ ANGL. DEV. = -12.6 DEGREES REMARK 500 ARG A 157 NE - CZ - NH1 ANGL. DEV. = -7.2 DEGREES REMARK 500 ARG A 157 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES REMARK 500 TYR A 169 CB - CG - CD2 ANGL. DEV. = 6.7 DEGREES REMARK 500 TYR A 169 CB - CG - CD1 ANGL. DEV. = -5.6 DEGREES REMARK 500 ASP A 194 CB - CG - OD1 ANGL. DEV. = 7.8 DEGREES REMARK 500 ARG A 207 NE - CZ - NH1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG A 207 NE - CZ - NH2 ANGL. DEV. = -5.1 DEGREES REMARK 500 ASP A 227 CB - CG - OD1 ANGL. DEV. = 7.4 DEGREES REMARK 500 ASP A 242 CB - CG - OD1 ANGL. DEV. = 6.8 DEGREES REMARK 500 ASP A 242 CB - CG - OD2 ANGL. DEV. = -6.6 DEGREES REMARK 500 GLU A 250 CB - CG - CD ANGL. DEV. = 16.8 DEGREES REMARK 500 TYR A 252 CB - CG - CD1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A 261 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ASP A 262 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 THR A 303 O - C - N ANGL. DEV. = 9.9 DEGREES REMARK 500 LEU B 4 CB - CA - C ANGL. DEV. = 12.7 DEGREES REMARK 500 ASN B 14 OD1 - CG - ND2 ANGL. DEV. = -14.6 DEGREES REMARK 500 ASP B 18 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ARG B 23 NE - CZ - NH2 ANGL. DEV. = -4.7 DEGREES REMARK 500 ARG B 30 CD - NE - CZ ANGL. DEV. = -13.3 DEGREES REMARK 500 ARG B 30 NE - CZ - NH1 ANGL. DEV. = -8.1 DEGREES REMARK 500 ARG B 30 NE - CZ - NH2 ANGL. DEV. = 6.9 DEGREES REMARK 500 LEU B 68 CB - CG - CD2 ANGL. DEV. = -11.2 DEGREES REMARK 500 ARG B 107 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ASP B 114 CB - CG - OD1 ANGL. DEV. = 8.3 DEGREES REMARK 500 ASP B 125 CB - CG - OD1 ANGL. DEV. = -6.7 DEGREES REMARK 500 ASP B 131 CB - CG - OD1 ANGL. DEV. = 8.5 DEGREES REMARK 500 ARG B 137 CD - NE - CZ ANGL. DEV. = 15.0 DEGREES REMARK 500 ARG B 137 NE - CZ - NH1 ANGL. DEV. = -6.1 DEGREES REMARK 500 ARG B 137 NE - CZ - NH2 ANGL. DEV. = 4.1 DEGREES REMARK 500 ASP B 138 CB - CG - OD1 ANGL. DEV. = 8.8 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 74 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 113 168.36 -22.90 REMARK 500 VAL A 139 -61.41 -104.38 REMARK 500 LYS A 243 12.57 -64.13 REMARK 500 ALA A 288 72.54 -170.33 REMARK 500 ALA A 293 -71.27 -45.66 REMARK 500 ALA B 113 159.36 -45.81 REMARK 500 LYS B 210 -91.98 -119.87 REMARK 500 ASP B 227 1.18 -69.16 REMARK 500 LYS B 243 3.54 -68.70 REMARK 500 ALA B 288 68.13 -166.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TYR A 320 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TYR B 320 DBREF 4TS1 A 1 317 UNP P00952 SYY_BACST 1 317 DBREF 4TS1 B 1 317 UNP P00952 SYY_BACST 1 317 SEQRES 1 A 319 MET ASP LEU LEU ALA GLU LEU GLN TRP ARG GLY LEU VAL SEQRES 2 A 319 ASN GLN THR THR ASP GLU ASP GLY LEU ARG LYS LEU LEU SEQRES 3 A 319 ASN GLU GLU ARG VAL THR LEU TYR CYS GLY PHE ASP PRO SEQRES 4 A 319 THR ALA ASP SER LEU HIS ILE GLY HIS LEU ALA THR ILE SEQRES 5 A 319 LEU THR MET ARG ARG PHE GLN GLN ALA GLY HIS ARG PRO SEQRES 6 A 319 ILE ALA LEU VAL GLY GLY ALA THR GLY LEU ILE GLY ASP SEQRES 7 A 319 PRO SER GLY LYS LYS SER GLU ARG THR LEU ASN ALA LYS SEQRES 8 A 319 GLU THR VAL GLU ALA TRP SER ALA ARG ILE LYS GLU GLN SEQRES 9 A 319 LEU GLY ARG PHE LEU ASP PHE GLU ALA ASP GLY ASN PRO SEQRES 10 A 319 ALA LYS ILE LYS ASN ASN TYR ASP TRP ILE GLY PRO LEU SEQRES 11 A 319 ASP VAL ILE THR PHE LEU ARG ASP VAL GLY LYS HIS PHE SEQRES 12 A 319 SER VAL ASN TYR MET MET ALA LYS GLU SER VAL GLN SER SEQRES 13 A 319 ARG ILE GLU THR GLY ILE SER PHE THR GLU PHE SER TYR SEQRES 14 A 319 MET MET LEU GLN ALA TYR ASP PHE LEU ARG LEU TYR GLU SEQRES 15 A 319 THR GLU GLY CYS ARG LEU GLN ILE GLY GLY SER ASP GLN SEQRES 16 A 319 TRP GLY ASN ILE THR ALA GLY LEU GLU LEU ILE ARG LYS SEQRES 17 A 319 THR LYS GLY GLU ALA ARG ALA PHE GLY LEU THR ILE PRO SEQRES 18 A 319 LEU VAL THR LYS ALA ASP GLY THR LYS PHE GLY LYS THR SEQRES 19 A 319 GLU SER GLY THR ILE TRP LEU ASP LYS GLU LYS THR SER SEQRES 20 A 319 PRO TYR GLU PHE TYR GLN PHE TRP ILE ASN THR ASP ASP SEQRES 21 A 319 ARG ASP VAL ILE ARG TYR LEU LYS TYR PHE THR PHE LEU SEQRES 22 A 319 SER LYS GLU GLU ILE GLU ALA LEU GLU GLN GLU LEU ARG SEQRES 23 A 319 GLU ALA PRO GLU LYS ARG ALA ALA GLN LYS THR LEU ALA SEQRES 24 A 319 GLU GLU VAL THR LYS LEU VAL HIS GLY GLU GLU ALA LEU SEQRES 25 A 319 ARG GLN ALA ILE ARG TYR ALA SEQRES 1 B 319 MET ASP LEU LEU ALA GLU LEU GLN TRP ARG GLY LEU VAL SEQRES 2 B 319 ASN GLN THR THR ASP GLU ASP GLY LEU ARG LYS LEU LEU SEQRES 3 B 319 ASN GLU GLU ARG VAL THR LEU TYR CYS GLY PHE ASP PRO SEQRES 4 B 319 THR ALA ASP SER LEU HIS ILE GLY HIS LEU ALA THR ILE SEQRES 5 B 319 LEU THR MET ARG ARG PHE GLN GLN ALA GLY HIS ARG PRO SEQRES 6 B 319 ILE ALA LEU VAL GLY GLY ALA THR GLY LEU ILE GLY ASP SEQRES 7 B 319 PRO SER GLY LYS LYS SER GLU ARG THR LEU ASN ALA LYS SEQRES 8 B 319 GLU THR VAL GLU ALA TRP SER ALA ARG ILE LYS GLU GLN SEQRES 9 B 319 LEU GLY ARG PHE LEU ASP PHE GLU ALA ASP GLY ASN PRO SEQRES 10 B 319 ALA LYS ILE LYS ASN ASN TYR ASP TRP ILE GLY PRO LEU SEQRES 11 B 319 ASP VAL ILE THR PHE LEU ARG ASP VAL GLY LYS HIS PHE SEQRES 12 B 319 SER VAL ASN TYR MET MET ALA LYS GLU SER VAL GLN SER SEQRES 13 B 319 ARG ILE GLU THR GLY ILE SER PHE THR GLU PHE SER TYR SEQRES 14 B 319 MET MET LEU GLN ALA TYR ASP PHE LEU ARG LEU TYR GLU SEQRES 15 B 319 THR GLU GLY CYS ARG LEU GLN ILE GLY GLY SER ASP GLN SEQRES 16 B 319 TRP GLY ASN ILE THR ALA GLY LEU GLU LEU ILE ARG LYS SEQRES 17 B 319 THR LYS GLY GLU ALA ARG ALA PHE GLY LEU THR ILE PRO SEQRES 18 B 319 LEU VAL THR LYS ALA ASP GLY THR LYS PHE GLY LYS THR SEQRES 19 B 319 GLU SER GLY THR ILE TRP LEU ASP LYS GLU LYS THR SER SEQRES 20 B 319 PRO TYR GLU PHE TYR GLN PHE TRP ILE ASN THR ASP ASP SEQRES 21 B 319 ARG ASP VAL ILE ARG TYR LEU LYS TYR PHE THR PHE LEU SEQRES 22 B 319 SER LYS GLU GLU ILE GLU ALA LEU GLU GLN GLU LEU ARG SEQRES 23 B 319 GLU ALA PRO GLU LYS ARG ALA ALA GLN LYS THR LEU ALA SEQRES 24 B 319 GLU GLU VAL THR LYS LEU VAL HIS GLY GLU GLU ALA LEU SEQRES 25 B 319 ARG GLN ALA ILE ARG TYR ALA HET TYR A 320 13 HET TYR B 320 13 HETNAM TYR TYROSINE FORMUL 3 TYR 2(C9 H11 N O3) FORMUL 5 HOH *144(H2 O) HELIX 1 A1 ASP A 2 ARG A 10 1 9 HELIX 2 A2 GLU A 19 GLU A 28 1 10 HELIX 3 A3 LEU A 49 GLN A 60 1 12 HELIX 4 A4 THR A 73 LEU A 75 5 3 HELIX 5 A5 LYS A 91 LEU A 105 1 15 HELIX 6 A6 TYR A 124 ILE A 127 1 4 HELIX 7 A7 VAL A 132 ASP A 138 1 7 HELIX 8 A GLY A 140 HIS A 142 5 3 HELIX 9 A8 VAL A 145 MET A 149 1 5 HELIX 10 A9 GLU A 152 GLN A 155 1 4 HELIX 11 A10 PHE A 164 GLU A 184 1 21 HELIX 12 A11 TRP A 196 LYS A 210 1 15 HELIX 13 A1* PRO A 248 ILE A 256 1 9 HELIX 14 A2* VAL A 263 PHE A 270 1 8 HELIX 15 A3* LYS A 275 GLU A 287 1 13 HELIX 16 A4* ALA A 293 VAL A 306 1 14 HELIX 17 B1 ASP B 2 ARG B 10 1 9 HELIX 18 B2 GLU B 19 GLU B 28 1 10 HELIX 19 B3 LEU B 49 GLN B 60 1 12 HELIX 20 B4 THR B 73 LEU B 75 5 3 HELIX 21 B5 LYS B 91 LEU B 105 1 15 HELIX 22 B6 TYR B 124 ILE B 127 1 4 HELIX 23 B7 VAL B 132 ASP B 138 1 7 HELIX 24 B GLY B 140 HIS B 142 5 3 HELIX 25 B8 VAL B 145 MET B 149 1 5 HELIX 26 B9 GLU B 152 GLN B 155 1 4 HELIX 27 B10 PHE B 164 GLU B 184 1 21 HELIX 28 B11 TRP B 196 LYS B 210 1 15 HELIX 29 B1* PRO B 248 ILE B 256 1 9 HELIX 30 B2* VAL B 263 PHE B 270 1 8 HELIX 31 B3* LYS B 275 GLU B 287 1 13 HELIX 32 B4* ALA B 293 VAL B 306 1 14 SHEET 1 S1A 6 GLN A 15 THR A 16 0 SHEET 2 S1A 6 PHE A 216 ILE A 220 -1 N THR A 219 O GLN A 15 SHEET 3 S1A 6 ARG A 187 GLY A 192 1 O GLN A 189 N LEU A 218 SHEET 4 S1A 6 THR A 32 PHE A 37 1 N TYR A 34 O LEU A 188 SHEET 5 S1A 6 ARG A 64 VAL A 69 1 O ILE A 66 N CYS A 35 SHEET 6 S1A 6 LYS A 119 ASN A 122 1 N LYS A 121 O ALA A 67 SHEET 1 S1B 6 GLN B 15 THR B 16 0 SHEET 2 S1B 6 PHE B 216 ILE B 220 -1 N THR B 219 O GLN B 15 SHEET 3 S1B 6 ARG B 187 GLY B 192 1 O GLN B 189 N LEU B 218 SHEET 4 S1B 6 THR B 32 PHE B 37 1 N TYR B 34 O LEU B 188 SHEET 5 S1B 6 ARG B 64 VAL B 69 1 O ILE B 66 N CYS B 35 SHEET 6 S1B 6 LYS B 119 ASN B 122 1 N LYS B 121 O ALA B 67 SITE 1 AC1 12 TYR A 34 GLY A 36 ASP A 38 LEU A 68 SITE 2 AC1 12 ASP A 78 TYR A 169 GLN A 173 ASP A 176 SITE 3 AC1 12 GLN A 189 GLN A 195 HOH A 348 HOH A 375 SITE 1 AC2 11 TYR B 34 GLY B 36 ASP B 38 ASP B 78 SITE 2 AC2 11 TYR B 169 GLN B 173 ASP B 176 GLN B 189 SITE 3 AC2 11 GLN B 195 HOH B 351 HOH B 389 CRYST1 95.460 67.060 61.370 90.00 90.78 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010476 0.000000 0.000143 0.00000 SCALE2 0.000000 0.014912 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016296 0.00000 MTRIX1 1 -0.160600 -0.719800 0.675400 22.91000 1 MTRIX2 1 -0.735100 -0.369400 -0.568500 33.08000 1 MTRIX3 1 0.658700 -0.587700 -0.469800 7.05000 1 MTRIX1 2 -0.093600 -0.715500 0.692300 19.78000 1 MTRIX2 2 -0.772200 -0.386800 -0.504200 35.47000 1 MTRIX3 2 0.628500 -0.581700 -0.516300 7.73000 1