PDB Short entry for 4U6W HEADER HYDROLASE 30-JUL-14 4U6W TITLE HSMETAP (F220M) IN COMPLEX WITH 1-AMINO-2-PROPYLPENTYL]PHOSPHONIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: METHIONINE AMINOPEPTIDASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: METAP 1,PEPTIDASE M 1; COMPND 5 EC: 3.4.11.18; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: METAP1, KIAA0094; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS INHIBITOR COMPLEX, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR T.ARYA,A.ADDLAGATTA REVDAT 2 20-NOV-19 4U6W 1 SOURCE JRNL REMARK LINK REVDAT 1 25-MAR-15 4U6W 0 JRNL AUTH T.ARYA,R.REDDI,C.KISHOR,R.J.GANJI,S.BHUKYA,R.GUMPENA, JRNL AUTH 2 S.MCGOWAN,M.DRAG,A.ADDLAGATTA JRNL TITL IDENTIFICATION OF THE MOLECULAR BASIS OF INHIBITOR JRNL TITL 2 SELECTIVITY BETWEEN THE HUMAN AND STREPTOCOCCAL TYPE I JRNL TITL 3 METHIONINE AMINOPEPTIDASES JRNL REF J.MED.CHEM. V. 58 2350 2015 JRNL REFN ISSN 0022-2623 JRNL PMID 25699713 JRNL DOI 10.1021/JM501790E REMARK 2 REMARK 2 RESOLUTION. 1.83 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.83 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 17.86 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 28441 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1518 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.83 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.88 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2047 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.91 REMARK 3 BIN R VALUE (WORKING SET) : 0.2690 REMARK 3 BIN FREE R VALUE SET COUNT : 112 REMARK 3 BIN FREE R VALUE : 0.3060 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2392 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 193 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.126 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.127 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.089 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.887 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2490 ; 0.020 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2356 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3382 ; 1.979 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5426 ; 0.915 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 309 ; 6.847 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 115 ;38.013 ;23.043 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 414 ;15.398 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;14.542 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 368 ; 0.119 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2813 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 580 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4U6W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1000202918. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 - 6.4 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33117 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 2.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG-MME, 100MM HEPES, PH 6, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 38.54950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 394 REMARK 465 PHE A 395 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 538 O HOH A 664 1.95 REMARK 500 O HOH A 565 O HOH A 594 2.13 REMARK 500 O HOH A 611 O HOH A 653 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 160 CB - CG - OD1 ANGL. DEV. = 7.2 DEGREES REMARK 500 ARG A 234 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 234 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 207 -109.96 49.16 REMARK 500 HIS A 306 -103.65 -170.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 670 DISTANCE = 6.39 ANGSTROMS REMARK 525 HOH A 680 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH A 682 DISTANCE = 6.30 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 402 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 205 O REMARK 620 2 ASN A 207 O 123.8 REMARK 620 3 VAL A 209 O 95.3 85.7 REMARK 620 4 SER A 363 O 151.6 74.0 108.9 REMARK 620 5 HOH A 685 O 87.3 148.9 91.9 77.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 401 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 229 OD1 REMARK 620 2 ASP A 229 OD2 55.7 REMARK 620 3 ASP A 240 OD1 95.6 150.7 REMARK 620 4 GLU A 367 OE1 106.2 92.4 90.0 REMARK 620 5 Q08 A 404 O1 140.2 89.1 120.0 92.0 REMARK 620 6 Q08 A 404 N 80.9 91.9 89.1 172.9 82.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 400 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 240 OD2 REMARK 620 2 HIS A 303 NE2 94.1 REMARK 620 3 GLU A 336 OE1 167.5 83.6 REMARK 620 4 GLU A 367 OE2 89.2 118.8 81.2 REMARK 620 5 Q08 A 404 O1 100.4 140.6 89.0 98.0 REMARK 620 6 Q08 A 404 O2 95.3 81.3 96.5 159.1 61.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue Q08 A 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4U1B RELATED DB: PDB REMARK 900 RELATED ID: 4U69 RELATED DB: PDB REMARK 900 RELATED ID: 4U6C RELATED DB: PDB REMARK 900 RELATED ID: 4U6E RELATED DB: PDB REMARK 900 RELATED ID: 4U6J RELATED DB: PDB REMARK 900 RELATED ID: 4U6Z RELATED DB: PDB REMARK 900 RELATED ID: 4U70 RELATED DB: PDB REMARK 900 RELATED ID: 4U71 RELATED DB: PDB REMARK 900 RELATED ID: 4U73 RELATED DB: PDB REMARK 900 RELATED ID: 4U75 RELATED DB: PDB REMARK 900 RELATED ID: 4U76 RELATED DB: PDB DBREF 4U6W A 90 395 UNP P53582 MAP11_HUMAN 81 386 SEQADV 4U6W MET A 309 UNP P53582 PHE 300 ENGINEERED MUTATION SEQRES 1 A 306 TYR ARG TYR THR GLY LYS LEU ARG PRO HIS TYR PRO LEU SEQRES 2 A 306 MET PRO THR ARG PRO VAL PRO SER TYR ILE GLN ARG PRO SEQRES 3 A 306 ASP TYR ALA ASP HIS PRO LEU GLY MET SER GLU SER GLU SEQRES 4 A 306 GLN ALA LEU LYS GLY THR SER GLN ILE LYS LEU LEU SER SEQRES 5 A 306 SER GLU ASP ILE GLU GLY MET ARG LEU VAL CYS ARG LEU SEQRES 6 A 306 ALA ARG GLU VAL LEU ASP VAL ALA ALA GLY MET ILE LYS SEQRES 7 A 306 PRO GLY VAL THR THR GLU GLU ILE ASP HIS ALA VAL HIS SEQRES 8 A 306 LEU ALA CYS ILE ALA ARG ASN CYS TYR PRO SER PRO LEU SEQRES 9 A 306 ASN TYR TYR ASN PHE PRO LYS SER CYS CYS THR SER VAL SEQRES 10 A 306 ASN GLU VAL ILE CYS HIS GLY ILE PRO ASP ARG ARG PRO SEQRES 11 A 306 LEU GLN GLU GLY ASP ILE VAL ASN VAL ASP ILE THR LEU SEQRES 12 A 306 TYR ARG ASN GLY TYR HIS GLY ASP LEU ASN GLU THR PHE SEQRES 13 A 306 PHE VAL GLY GLU VAL ASP ASP GLY ALA ARG LYS LEU VAL SEQRES 14 A 306 GLN THR THR TYR GLU CYS LEU MET GLN ALA ILE ASP ALA SEQRES 15 A 306 VAL LYS PRO GLY VAL ARG TYR ARG GLU LEU GLY ASN ILE SEQRES 16 A 306 ILE GLN LYS HIS ALA GLN ALA ASN GLY PHE SER VAL VAL SEQRES 17 A 306 ARG SER TYR CYS GLY HIS GLY ILE HIS LYS LEU MET HIS SEQRES 18 A 306 THR ALA PRO ASN VAL PRO HIS TYR ALA LYS ASN LYS ALA SEQRES 19 A 306 VAL GLY VAL MET LYS SER GLY HIS VAL PHE THR ILE GLU SEQRES 20 A 306 PRO MET ILE CYS GLU GLY GLY TRP GLN ASP GLU THR TRP SEQRES 21 A 306 PRO ASP GLY TRP THR ALA VAL THR ARG ASP GLY LYS ARG SEQRES 22 A 306 SER ALA GLN PHE GLU HIS THR LEU LEU VAL THR ASP THR SEQRES 23 A 306 GLY CYS GLU ILE LEU THR ARG ARG LEU ASP SER ALA ARG SEQRES 24 A 306 PRO HIS PHE MET SER GLN PHE HET CO A 400 1 HET CO A 401 1 HET K A 402 1 HET GOL A 403 6 HET Q08 A 404 13 HETNAM CO COBALT (II) ION HETNAM K POTASSIUM ION HETNAM GOL GLYCEROL HETNAM Q08 [(1R)-1-AMINO-2-PROPYLPENTYL]PHOSPHONIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 CO 2(CO 2+) FORMUL 4 K K 1+ FORMUL 5 GOL C3 H8 O3 FORMUL 6 Q08 C8 H20 N O3 P FORMUL 7 HOH *193(H2 O) HELIX 1 AA1 PRO A 115 HIS A 120 5 6 HELIX 2 AA2 SER A 125 LYS A 132 1 8 HELIX 3 AA3 SER A 141 GLY A 164 1 24 HELIX 4 AA4 THR A 171 ARG A 186 1 16 HELIX 5 AA5 ASN A 194 PHE A 198 5 5 HELIX 6 AA6 ASP A 251 ALA A 271 1 21 HELIX 7 AA7 ARG A 279 ASN A 292 1 14 SHEET 1 AA1 3 TYR A 189 PRO A 190 0 SHEET 2 AA1 3 ILE A 225 ARG A 234 -1 O TYR A 233 N TYR A 189 SHEET 3 AA1 3 CYS A 203 VAL A 206 -1 N CYS A 203 O ASP A 229 SHEET 1 AA2 3 TYR A 189 PRO A 190 0 SHEET 2 AA2 3 ILE A 225 ARG A 234 -1 O TYR A 233 N TYR A 189 SHEET 3 AA2 3 TYR A 237 PHE A 246 -1 O LEU A 241 N ILE A 230 SHEET 1 AA3 3 VAL A 209 CYS A 211 0 SHEET 2 AA3 3 ALA A 355 THR A 357 -1 O ALA A 355 N ILE A 210 SHEET 3 AA3 3 ASP A 346 THR A 348 -1 N GLU A 347 O VAL A 356 SHEET 1 AA4 3 SER A 295 VAL A 296 0 SHEET 2 AA4 3 MET A 338 CYS A 340 -1 O CYS A 340 N SER A 295 SHEET 3 AA4 3 SER A 363 GLN A 365 -1 O ALA A 364 N ILE A 339 SHEET 1 AA5 2 GLY A 302 GLY A 304 0 SHEET 2 AA5 2 THR A 311 VAL A 315 -1 O VAL A 315 N GLY A 302 SHEET 1 AA6 3 VAL A 332 ILE A 335 0 SHEET 2 AA6 3 HIS A 368 VAL A 372 -1 O LEU A 370 N PHE A 333 SHEET 3 AA6 3 CYS A 377 ILE A 379 -1 O GLU A 378 N LEU A 371 LINK O SER A 205 K K A 402 1555 1555 3.02 LINK O ASN A 207 K K A 402 1555 1555 2.75 LINK O VAL A 209 K K A 402 1555 1555 2.51 LINK OD1 ASP A 229 CO CO A 401 1555 1555 2.17 LINK OD2 ASP A 229 CO CO A 401 1555 1555 2.34 LINK OD1 ASP A 240 CO CO A 401 1555 1555 1.95 LINK OD2 ASP A 240 CO CO A 400 1555 1555 2.06 LINK NE2 HIS A 303 CO CO A 400 1555 1555 2.15 LINK SD BMET A 309 C6 Q08 A 404 1555 1555 1.75 LINK OE1 GLU A 336 CO CO A 400 1555 1555 2.25 LINK O SER A 363 K K A 402 1555 1555 2.60 LINK OE1 GLU A 367 CO CO A 401 1555 1555 2.04 LINK OE2 GLU A 367 CO CO A 400 1555 1555 2.00 LINK CO CO A 400 O1 Q08 A 404 1555 1555 2.22 LINK CO CO A 400 O2 Q08 A 404 1555 1555 2.41 LINK CO CO A 401 O1 Q08 A 404 1555 1555 2.06 LINK CO CO A 401 N Q08 A 404 1555 1555 2.20 LINK K K A 402 O HOH A 685 1555 1555 2.80 CISPEP 1 TYR A 100 PRO A 101 0 1.39 CISPEP 2 ALA A 312 PRO A 313 0 1.36 SITE 1 AC1 6 ASP A 240 HIS A 303 GLU A 336 GLU A 367 SITE 2 AC1 6 CO A 401 Q08 A 404 SITE 1 AC2 5 ASP A 229 ASP A 240 GLU A 367 CO A 400 SITE 2 AC2 5 Q08 A 404 SITE 1 AC3 5 SER A 205 ASN A 207 VAL A 209 SER A 363 SITE 2 AC3 5 HOH A 685 SITE 1 AC4 9 THR A 172 THR A 204 SER A 205 VAL A 206 SITE 2 AC4 9 VAL A 209 ILE A 214 ASP A 216 ARG A 218 SITE 3 AC4 9 HOH A 557 SITE 1 AC5 15 SER A 191 HIS A 212 ASP A 229 THR A 231 SITE 2 AC5 15 ASP A 240 HIS A 303 MET A 309 HIS A 310 SITE 3 AC5 15 GLU A 336 TRP A 353 GLU A 367 CO A 400 SITE 4 AC5 15 CO A 401 HOH A 687 HOH A 688 CRYST1 47.149 77.099 47.487 90.00 91.29 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021209 0.000000 0.000479 0.00000 SCALE2 0.000000 0.012970 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021064 0.00000