PDB Short entry for 4UHY HEADER SIGNALING PROTEIN 27-MAR-15 4UHY TITLE CRYSTAL STRUCTURE OF THE HUMAN RGMA-BMP2 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: REPULSIVE GUIDANCE MOLECULE A; COMPND 3 CHAIN: C; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN, RESIDUES 45-140; COMPND 5 SYNONYM: RGM DOMAIN FAMILY MEMBER A, RGMA; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: BONE MORPHOGENETIC PROTEIN 2; COMPND 9 CHAIN: A, B; COMPND 10 FRAGMENT: C-TERMINAL DOMAIN SIGNALING DOMAIN, RESIDUES 283-396; COMPND 11 SYNONYM: BMP-2, BONE MORPHOGENETIC PROTEIN 2A, BMP-2A, BONE COMPND 12 MORPHOGENETIC PROTEIN 2, BMP2; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293T; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PHLSEC; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_VARIANT: ROSETTA PLYSS; SOURCE 18 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 19 EXPRESSION_SYSTEM_VECTOR: PET22B KEYWDS SIGNALING PROTEIN, BONE MORPHOGENETIC PROTEIN PATHWAY, HEMOJUVELIN, KEYWDS 2 MORPHOGEN, AXON GUIDANCE, CELL SURFACE RECEPTOR SIGNALING EXPDTA X-RAY DIFFRACTION AUTHOR E.G.HEALEY,B.BISHOP,J.ELEGHEERT,C.H.BELL,S.PADILLA-PARRA,C.SIEBOLD REVDAT 3 17-JUN-15 4UHY 1 JRNL REVDAT 2 20-MAY-15 4UHY 1 JRNL REVDAT 1 06-MAY-15 4UHY 0 JRNL AUTH E.G.HEALEY,B.BISHOP,J.ELEGHEERT,C.H.BELL,S.PADILLA-PARRA, JRNL AUTH 2 C.SIEBOLD JRNL TITL REPULSIVE GUIDANCE MOLECULE IS A STRUCTURAL BRIDGE BETWEEN JRNL TITL 2 NEOGENIN AND BONE MORPHOGENETIC PROTEIN. JRNL REF NAT.STRUCT.MOL.BIOL. V. 22 458 2015 JRNL REFN ISSN 1545-9993 JRNL PMID 25938661 JRNL DOI 10.1038/NSMB.3016 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.04 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.0 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.85 REMARK 3 NUMBER OF REFLECTIONS : 8074 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.2287 REMARK 3 R VALUE (WORKING SET) : 0.2271 REMARK 3 FREE R VALUE : 0.2640 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.61 REMARK 3 FREE R VALUE TEST SET COUNT : 372 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 5 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.58 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.85 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2246 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2331 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2156 REMARK 3 BIN R VALUE (WORKING SET) : 0.2324 REMARK 3 BIN FREE R VALUE : 0.2542 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.01 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 90 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2112 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 78.56 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 110.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -31.9331 REMARK 3 B22 (A**2) : -31.9331 REMARK 3 B33 (A**2) : 63.8662 REMARK 3 B12 (A**2) : 0.0000 REMARK 3 B13 (A**2) : 0.0000 REMARK 3 B23 (A**2) : 0.0000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.800 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.428 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.8219 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.7773 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2176 ; 2.00 ; HARMONIC REMARK 3 BOND ANGLES : 2967 ; 2.00 ; HARMONIC REMARK 3 TORSION ANGLES : 971 ; 2.00 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 50 ; 2.00 ; HARMONIC REMARK 3 GENERAL PLANES : 315 ; 5.00 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2176 ; 20.00 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 279 ; 5.00 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 2534 ; 4.00 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.15 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.79 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 3.09 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4UHY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-MAR-15. REMARK 100 THE PDBE ID CODE IS EBI-63461. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.01630 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL (PILATUS 6M) REMARK 200 DETECTOR MANUFACTURER : DECTRIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8086 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.20 REMARK 200 RESOLUTION RANGE LOW (A) : 45.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.1 REMARK 200 R MERGE (I) : 0.15 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.10 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.3 REMARK 200 R MERGE FOR SHELL (I) : 0.74 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.00 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M CITRIC ACID, PH 4.0, 20% (V/V) REMARK 280 2-METHYL-2,4-PENTANEDIOL (MPD), 0.2 M GLYCINE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.56200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 38.28100 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 38.28100 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 76.56200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 283 REMARK 465 ALA A 284 REMARK 465 LYS A 285 REMARK 465 HIS A 286 REMARK 465 LYS A 287 REMARK 465 GLN A 288 REMARK 465 ARG A 289 REMARK 465 LYS A 290 REMARK 465 ARG A 291 REMARK 465 LEU A 292 REMARK 465 GLN B 283 REMARK 465 ALA B 284 REMARK 465 LYS B 285 REMARK 465 HIS B 286 REMARK 465 LYS B 287 REMARK 465 GLN B 288 REMARK 465 ARG B 289 REMARK 465 LYS B 290 REMARK 465 ARG B 291 REMARK 465 GLU C 43 REMARK 465 THR C 44 REMARK 465 GLY C 45 REMARK 465 SER C 46 REMARK 465 HIS C 65 REMARK 465 ALA C 66 REMARK 465 PRO C 67 REMARK 465 ALA C 68 REMARK 465 SER C 69 REMARK 465 ASP C 70 REMARK 465 LYS C 117 REMARK 465 ASP C 118 REMARK 465 GLY C 119 REMARK 465 PRO C 120 REMARK 465 THR C 121 REMARK 465 SER C 122 REMARK 465 GLN C 123 REMARK 465 PRO C 124 REMARK 465 ARG C 125 REMARK 465 LEU C 126 REMARK 465 ARG C 127 REMARK 465 THR C 128 REMARK 465 LEU C 129 REMARK 465 PRO C 130 REMARK 465 PRO C 131 REMARK 465 ALA C 132 REMARK 465 GLY C 133 REMARK 465 ASP C 134 REMARK 465 SER C 135 REMARK 465 GLN C 136 REMARK 465 GLU C 137 REMARK 465 ARG C 138 REMARK 465 SER C 139 REMARK 465 GLY C 140 REMARK 465 THR C 141 REMARK 465 LYS C 142 REMARK 465 HIS C 143 REMARK 465 HIS C 144 REMARK 465 HIS C 145 REMARK 465 HIS C 146 REMARK 465 HIS C 147 REMARK 465 HIS C 148 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS C 49 CG CD CE NZ REMARK 470 ASN C 54 CG OD1 ND2 REMARK 470 PRO C 73 CG CD REMARK 470 HIS C 113 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS C 76 C - N - CA ANGL. DEV. = 17.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 301 115.30 -164.27 REMARK 500 PHE A 323 177.48 74.07 REMARK 500 SER A 339 103.63 -175.01 REMARK 500 ASN A 377 34.48 71.83 REMARK 500 LEU B 301 115.48 -163.55 REMARK 500 PHE B 323 177.15 73.44 REMARK 500 CYS B 329 56.40 -112.32 REMARK 500 LEU B 333 -33.66 -133.11 REMARK 500 ASP B 335 -62.09 59.18 REMARK 500 ASN B 338 99.21 63.75 REMARK 500 CYS C 76 -30.28 83.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4UHZ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE HUMAN RGMB-BMP2 COMPLEX, REMARK 900 CRYSTAL FORM 1 REMARK 900 RELATED ID: 4UI0 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE HUMAN RGMB-BMP2 COMPLEX, REMARK 900 CRYSTAL FORM 2 REMARK 900 RELATED ID: 4UI1 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE HUMAN RGMC-BMP2 COMPLEX REMARK 900 RELATED ID: 4UI2 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE TERNARY RGMB-BMP2-NEO1 REMARK 900 COMPLEX REMARK 999 REMARK 999 SEQUENCE REMARK 999 N-TERMINAL DOMAIN OF HUMAN RGMA WITH 3 ADDITIONAL N- REMARK 999 TERMINAL RESIDUES (ETG) AND 9 ADDITIONAL C-TERMINAL REMARK 999 RESIDUES (GTKHHHHHH). DBREF 4UHY A 283 396 UNP P12643 BMP2_HUMAN 283 396 DBREF 4UHY B 283 396 UNP P12643 BMP2_HUMAN 283 396 DBREF 4UHY C 45 140 UNP Q96B86 RGMA_HUMAN 45 140 SEQADV 4UHY GLU C 43 UNP Q96B86 EXPRESSION TAG SEQADV 4UHY THR C 44 UNP Q96B86 EXPRESSION TAG SEQADV 4UHY THR C 141 UNP Q96B86 EXPRESSION TAG SEQADV 4UHY LYS C 142 UNP Q96B86 EXPRESSION TAG SEQADV 4UHY HIS C 143 UNP Q96B86 EXPRESSION TAG SEQADV 4UHY HIS C 144 UNP Q96B86 EXPRESSION TAG SEQADV 4UHY HIS C 145 UNP Q96B86 EXPRESSION TAG SEQADV 4UHY HIS C 146 UNP Q96B86 EXPRESSION TAG SEQADV 4UHY HIS C 147 UNP Q96B86 EXPRESSION TAG SEQADV 4UHY HIS C 148 UNP Q96B86 EXPRESSION TAG SEQRES 1 C 106 GLU THR GLY SER PRO CYS LYS ILE LEU LYS CYS ASN SER SEQRES 2 C 106 GLU PHE TRP SER ALA THR SER GLY SER HIS ALA PRO ALA SEQRES 3 C 106 SER ASP ASP THR PRO GLU PHE CYS ALA ALA LEU ARG SER SEQRES 4 C 106 TYR ALA LEU CYS THR ARG ARG THR ALA ARG THR CYS ARG SEQRES 5 C 106 GLY ASP LEU ALA TYR HIS SER ALA VAL HIS GLY ILE GLU SEQRES 6 C 106 ASP LEU MET SER GLN HIS ASN CYS SER LYS ASP GLY PRO SEQRES 7 C 106 THR SER GLN PRO ARG LEU ARG THR LEU PRO PRO ALA GLY SEQRES 8 C 106 ASP SER GLN GLU ARG SER GLY THR LYS HIS HIS HIS HIS SEQRES 9 C 106 HIS HIS SEQRES 1 A 114 GLN ALA LYS HIS LYS GLN ARG LYS ARG LEU LYS SER SER SEQRES 2 A 114 CYS LYS ARG HIS PRO LEU TYR VAL ASP PHE SER ASP VAL SEQRES 3 A 114 GLY TRP ASN ASP TRP ILE VAL ALA PRO PRO GLY TYR HIS SEQRES 4 A 114 ALA PHE TYR CYS HIS GLY GLU CYS PRO PHE PRO LEU ALA SEQRES 5 A 114 ASP HIS LEU ASN SER THR ASN HIS ALA ILE VAL GLN THR SEQRES 6 A 114 LEU VAL ASN SER VAL ASN SER LYS ILE PRO LYS ALA CYS SEQRES 7 A 114 CYS VAL PRO THR GLU LEU SER ALA ILE SER MET LEU TYR SEQRES 8 A 114 LEU ASP GLU ASN GLU LYS VAL VAL LEU LYS ASN TYR GLN SEQRES 9 A 114 ASP MET VAL VAL GLU GLY CYS GLY CYS ARG SEQRES 1 B 114 GLN ALA LYS HIS LYS GLN ARG LYS ARG LEU LYS SER SER SEQRES 2 B 114 CYS LYS ARG HIS PRO LEU TYR VAL ASP PHE SER ASP VAL SEQRES 3 B 114 GLY TRP ASN ASP TRP ILE VAL ALA PRO PRO GLY TYR HIS SEQRES 4 B 114 ALA PHE TYR CYS HIS GLY GLU CYS PRO PHE PRO LEU ALA SEQRES 5 B 114 ASP HIS LEU ASN SER THR ASN HIS ALA ILE VAL GLN THR SEQRES 6 B 114 LEU VAL ASN SER VAL ASN SER LYS ILE PRO LYS ALA CYS SEQRES 7 B 114 CYS VAL PRO THR GLU LEU SER ALA ILE SER MET LEU TYR SEQRES 8 B 114 LEU ASP GLU ASN GLU LYS VAL VAL LEU LYS ASN TYR GLN SEQRES 9 B 114 ASP MET VAL VAL GLU GLY CYS GLY CYS ARG HELIX 1 1 GLY A 309 ASP A 312 5 4 HELIX 2 2 THR A 340 SER A 351 1 12 HELIX 3 3 GLY B 309 ASP B 312 5 4 HELIX 4 4 THR B 340 SER B 351 1 12 HELIX 5 5 LYS C 49 THR C 61 1 13 HELIX 6 6 CYS C 76 ALA C 90 1 15 HELIX 7 7 ARG C 91 CYS C 93 5 3 HELIX 8 8 ASP C 96 HIS C 113 1 18 SHEET 1 AA 2 LYS A 297 HIS A 299 0 SHEET 2 AA 2 TYR A 324 HIS A 326 -1 O TYR A 324 N HIS A 299 SHEET 1 AB 2 TYR A 302 ASP A 304 0 SHEET 2 AB 2 GLY A 319 HIS A 321 -1 O TYR A 320 N VAL A 303 SHEET 1 AC 3 ILE A 314 ALA A 316 0 SHEET 2 AC 3 CYS A 361 LEU A 374 -1 O LEU A 372 N VAL A 315 SHEET 3 AC 3 VAL A 380 CYS A 395 -1 O VAL A 381 N TYR A 373 SHEET 1 BA 2 LYS B 297 HIS B 299 0 SHEET 2 BA 2 TYR B 324 HIS B 326 -1 O TYR B 324 N HIS B 299 SHEET 1 BB 2 TYR B 302 ASP B 304 0 SHEET 2 BB 2 GLY B 319 HIS B 321 -1 O TYR B 320 N VAL B 303 SHEET 1 BC 3 ILE B 314 ALA B 316 0 SHEET 2 BC 3 CYS B 361 LEU B 374 -1 O LEU B 372 N VAL B 315 SHEET 3 BC 3 VAL B 380 CYS B 395 -1 O VAL B 381 N TYR B 373 SSBOND 1 CYS A 296 CYS A 361 1555 1555 2.03 SSBOND 2 CYS A 325 CYS A 393 1555 1555 2.01 SSBOND 3 CYS A 329 CYS A 395 1555 1555 2.02 SSBOND 4 CYS A 360 CYS B 360 1555 1555 2.03 SSBOND 5 CYS B 296 CYS B 361 1555 1555 2.02 SSBOND 6 CYS B 325 CYS B 393 1555 1555 2.02 SSBOND 7 CYS B 329 CYS B 395 1555 1555 2.02 SSBOND 8 CYS C 48 CYS C 93 1555 1555 2.03 SSBOND 9 CYS C 53 CYS C 85 1555 1555 2.03 SSBOND 10 CYS C 76 CYS C 115 1555 1555 2.04 CISPEP 1 ALA A 316 PRO A 317 0 -1.58 CISPEP 2 PHE A 331 PRO A 332 0 -5.04 CISPEP 3 ALA B 316 PRO B 317 0 0.02 CISPEP 4 PHE B 331 PRO B 332 0 -0.36 CISPEP 5 THR C 61 SER C 62 0 1.19 CISPEP 6 SER C 62 GLY C 63 0 0.99 CISPEP 7 GLY C 63 SER C 64 0 0.39 CISPEP 8 ASP C 71 THR C 72 0 1.40 CISPEP 9 PRO C 73 GLU C 74 0 -2.21 CISPEP 10 PHE C 75 CYS C 76 0 1.29 CRYST1 83.855 83.855 114.843 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011925 0.006885 0.000000 0.00000 SCALE2 0.000000 0.013770 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008708 0.00000 MTRIX1 1 0.453800 -0.392800 0.799800 2.88700 1 MTRIX2 1 -0.384200 -0.896100 -0.222100 84.14000 1 MTRIX3 1 0.804000 -0.206500 -0.557600 35.38000 1