PDB Short entry for 4UWD HEADER OXIDOREDUCTASE 11-AUG-14 4UWD TITLE HIF PROLYL HYDROXYLASE 2 (PHD2/ EGLN1) D315E VARIANT IN COMPLEX WITH TITLE 2 MN(II) AND N-[(1-CHLORO-4-HYDROXYISOQUINOLIN-3-YL)CARBONYL]GLYCINE TITLE 3 (IOX3/UN9) COMPND MOL_ID: 1; COMPND 2 MOLECULE: EGL NINE HOMOLOG 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC DOMAIN, RESIDUES 181-426; COMPND 5 SYNONYM: HYPOXIA-INDUCIBLE FACTOR PROLYL HYDROXYLASE 2, HIF-PH2, HIF COMPND 6 -PROLYL HYDROXYLASE 2, HPH-2, PROLYL HYDROXYLASE DOMAIN-CONTAINING COMPND 7 PROTEIN 2, PHD2, SM-20, HYPOXIA-INDUCIBLE FACTOR PROLYL HYDROXYLASE COMPND 8 2; COMPND 9 EC: 1.14.11.2, 1.14.11.-; COMPND 10 ENGINEERED: YES; COMPND 11 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS OXIDOREDUCTASE, NON-HEME, IRON, 2-OXOGLUTARATE, DIOXYGENASE, HYPOXIA- KEYWDS 2 INDUCIBLE FACTOR, HIF, HIF PROLYL HYDROXYLASE DOMAIN 2, PHD2, EGLN, KEYWDS 3 OXYGENASE, HYPOXIA, DNA-BINDING, METAL-BINDING, TRANSCRIPTION, KEYWDS 4 HELIX-LOOP-HELIX-BETA, DSBH, FACIAL TRIAD, ASPARAGINYL/ ASPARTYL KEYWDS 5 HYDROXYLASE, TRANSCRIPTION AND EPIGENETIC REGULATION, SIGNALING, KEYWDS 6 DEVELOPMENT, CELL STRUCTURE, ANKYRIN REPEAT DOMAIN, ARD, BETA- KEYWDS 7 HYDROXYLATION, TRANSCRIPTION ACTIVATOR/INHIBITOR, PHOSPHORYLATION, KEYWDS 8 S-NITROSYLATION EXPDTA X-RAY DIFFRACTION AUTHOR R.CHOWDHURY,H.TARHONSKAYA,C.J.SCHOFIELD REVDAT 6 10-JAN-24 4UWD 1 REMARK LINK REVDAT 5 08-MAY-19 4UWD 1 REMARK REVDAT 4 06-MAR-19 4UWD 1 REMARK REVDAT 3 22-OCT-14 4UWD 1 JRNL REVDAT 2 10-SEP-14 4UWD 1 ATOM ANISOU REVDAT 1 27-AUG-14 4UWD 0 JRNL AUTH H.TARHONSKAYA,R.CHOWDHURY,I.K.H.LEUNG,N.D.LOIK, JRNL AUTH 2 J.S.O.MCCULLAGH,T.D.W.CLARIDGE,C.J.SCHOFIELD,E.FLASHMAN JRNL TITL INVESTIGATING THE CONTRIBUTION OF THE ACTIVE SITE JRNL TITL 2 ENVIRONMENT TO THE SLOW REACTION OF HYPOXIA-INDUCIBLE FACTOR JRNL TITL 3 PROLYL HYDROXYLASE DOMAIN 2 WITH OXYGEN. JRNL REF BIOCHEM.J. V. 463 363 2014 JRNL REFN ISSN 0264-6021 JRNL PMID 25120187 JRNL DOI 10.1042/BJ20140779 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.CHOWDHURY,J.I.CANDELA-LENA,M.C.CHAN,D.J.GREENALD,K.K.YEOH, REMARK 1 AUTH 2 Y.TIAN,M.A.MCDONOUGH,A.TUMBER,N.R.ROSE,A.CONEJO-GARCIA, REMARK 1 AUTH 3 M.DEMETRIADES,S.MATHAVAN,A.KAWAMURA,M.K.LEE,F.VAN EEDEN, REMARK 1 AUTH 4 C.W.PUGH,P.J.RATCLIFFE,C.J.SCHOFIELD REMARK 1 TITL SELECTIVE SMALL MOLECULE PROBES FOR THE HYPOXIA INDUCIBLE REMARK 1 TITL 2 FACTOR (HIF) PROLYL HYDROXYLASES. REMARK 1 REF ACS CHEM.BIOL. V. 8 1488 2013 REMARK 1 REFN ISSN 1554-8929 REMARK 1 PMID 23683440 REMARK 1 DOI 10.1021/CB400088Q REMARK 2 REMARK 2 RESOLUTION. 1.72 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.72 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.86 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 29416 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.151 REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.174 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1497 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.8750 - 3.8278 1.00 2636 141 0.1388 0.1661 REMARK 3 2 3.8278 - 3.0384 1.00 2573 126 0.1408 0.1665 REMARK 3 3 3.0384 - 2.6544 1.00 2521 160 0.1554 0.1795 REMARK 3 4 2.6544 - 2.4117 1.00 2554 133 0.1551 0.1816 REMARK 3 5 2.4117 - 2.2388 1.00 2547 126 0.1455 0.1674 REMARK 3 6 2.2388 - 2.1068 1.00 2524 129 0.1479 0.1592 REMARK 3 7 2.1068 - 2.0013 1.00 2497 160 0.1542 0.1661 REMARK 3 8 2.0013 - 1.9142 1.00 2513 135 0.1703 0.1762 REMARK 3 9 1.9142 - 1.8405 1.00 2526 136 0.1795 0.2056 REMARK 3 10 1.8405 - 1.7770 1.00 2504 123 0.1926 0.2148 REMARK 3 11 1.7770 - 1.7214 1.00 2524 128 0.2283 0.2782 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.050 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.62 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 1883 REMARK 3 ANGLE : 1.216 2572 REMARK 3 CHIRALITY : 0.048 270 REMARK 3 PLANARITY : 0.007 344 REMARK 3 DIHEDRAL : 13.787 690 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESID 188 THROUGH 215 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.2240 28.1569 -0.7477 REMARK 3 T TENSOR REMARK 3 T11: 0.3379 T22: 0.4096 REMARK 3 T33: 0.3881 T12: 0.0436 REMARK 3 T13: -0.1055 T23: 0.0367 REMARK 3 L TENSOR REMARK 3 L11: 1.6593 L22: 2.6149 REMARK 3 L33: 0.3121 L12: -0.4622 REMARK 3 L13: -0.7149 L23: 0.4423 REMARK 3 S TENSOR REMARK 3 S11: 0.1295 S12: 0.3164 S13: 0.0370 REMARK 3 S21: -0.2562 S22: -0.1844 S23: 0.6640 REMARK 3 S31: -0.1168 S32: -0.5230 S33: 0.0154 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESID 216 THROUGH 246 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.2149 9.0801 -4.9451 REMARK 3 T TENSOR REMARK 3 T11: 0.3610 T22: 0.3137 REMARK 3 T33: 0.3408 T12: -0.0313 REMARK 3 T13: -0.0231 T23: -0.0084 REMARK 3 L TENSOR REMARK 3 L11: 3.5457 L22: 3.5483 REMARK 3 L33: 1.9407 L12: 0.2840 REMARK 3 L13: -0.7282 L23: 0.6817 REMARK 3 S TENSOR REMARK 3 S11: -0.0195 S12: -0.0571 S13: -0.6772 REMARK 3 S21: -0.2870 S22: 0.0632 S23: -0.2232 REMARK 3 S31: 0.2698 S32: -0.0104 S33: -0.0304 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESID 247 THROUGH 266 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.2973 13.4890 -5.2201 REMARK 3 T TENSOR REMARK 3 T11: 0.3476 T22: 0.3294 REMARK 3 T33: 0.3549 T12: 0.0134 REMARK 3 T13: 0.0163 T23: 0.0423 REMARK 3 L TENSOR REMARK 3 L11: 3.1932 L22: 2.7840 REMARK 3 L33: 4.4891 L12: -0.0170 REMARK 3 L13: -0.4266 L23: -0.1894 REMARK 3 S TENSOR REMARK 3 S11: -0.0174 S12: 0.1179 S13: -0.2928 REMARK 3 S21: -0.3345 S22: -0.3195 S23: -0.5309 REMARK 3 S31: 0.4765 S32: 0.4650 S33: 0.2563 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESID 267 THROUGH 282 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.1425 26.0266 -12.0176 REMARK 3 T TENSOR REMARK 3 T11: 0.4556 T22: 0.4681 REMARK 3 T33: 0.2777 T12: 0.0371 REMARK 3 T13: -0.1152 T23: 0.0562 REMARK 3 L TENSOR REMARK 3 L11: 4.2404 L22: 7.3956 REMARK 3 L33: 2.5570 L12: -2.3121 REMARK 3 L13: -1.7799 L23: 2.0627 REMARK 3 S TENSOR REMARK 3 S11: 0.2777 S12: 0.6934 S13: 0.1402 REMARK 3 S21: -1.1857 S22: -0.2980 S23: 0.3602 REMARK 3 S31: -0.0242 S32: -0.6535 S33: -0.0128 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESID 283 THROUGH 329 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.1685 25.6854 1.3951 REMARK 3 T TENSOR REMARK 3 T11: 0.2407 T22: 0.2509 REMARK 3 T33: 0.2631 T12: -0.0168 REMARK 3 T13: -0.0756 T23: 0.0348 REMARK 3 L TENSOR REMARK 3 L11: 1.6619 L22: 3.1952 REMARK 3 L33: 1.4254 L12: 0.0596 REMARK 3 L13: -0.7507 L23: -0.1054 REMARK 3 S TENSOR REMARK 3 S11: 0.0290 S12: 0.0095 S13: 0.2108 REMARK 3 S21: 0.1120 S22: -0.0613 S23: -0.1606 REMARK 3 S31: -0.1291 S32: -0.0158 S33: 0.0267 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN A AND (RESID 330 THROUGH 353 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.2046 15.4735 9.6131 REMARK 3 T TENSOR REMARK 3 T11: 0.3029 T22: 0.3488 REMARK 3 T33: 0.3092 T12: -0.0510 REMARK 3 T13: -0.0167 T23: 0.0715 REMARK 3 L TENSOR REMARK 3 L11: 3.6852 L22: 4.1211 REMARK 3 L33: 3.9905 L12: 0.1802 REMARK 3 L13: -0.6309 L23: 0.3217 REMARK 3 S TENSOR REMARK 3 S11: 0.0392 S12: -0.3513 S13: -0.0965 REMARK 3 S21: 0.5306 S22: -0.0892 S23: 0.6302 REMARK 3 S31: 0.2777 S32: -0.6114 S33: 0.0949 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN A AND (RESID 354 THROUGH 391 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.8159 20.2389 4.0822 REMARK 3 T TENSOR REMARK 3 T11: 0.2652 T22: 0.2638 REMARK 3 T33: 0.2337 T12: -0.0286 REMARK 3 T13: -0.0673 T23: 0.0333 REMARK 3 L TENSOR REMARK 3 L11: 2.3017 L22: 2.4302 REMARK 3 L33: 1.3922 L12: -0.2292 REMARK 3 L13: -0.7695 L23: 0.4075 REMARK 3 S TENSOR REMARK 3 S11: -0.0137 S12: -0.0694 S13: 0.0182 REMARK 3 S21: 0.1505 S22: -0.0183 S23: 0.1111 REMARK 3 S31: 0.1094 S32: -0.1834 S33: 0.0261 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN A AND (RESID 392 THROUGH 409 ) REMARK 3 ORIGIN FOR THE GROUP (A): 49.4624 40.3077 -2.8747 REMARK 3 T TENSOR REMARK 3 T11: 0.3607 T22: 0.3184 REMARK 3 T33: 0.5216 T12: -0.0288 REMARK 3 T13: 0.0277 T23: -0.0105 REMARK 3 L TENSOR REMARK 3 L11: 2.6453 L22: 0.3638 REMARK 3 L33: 2.9196 L12: -0.0056 REMARK 3 L13: -2.4565 L23: 0.3918 REMARK 3 S TENSOR REMARK 3 S11: -0.1411 S12: 0.0358 S13: -0.6983 REMARK 3 S21: -0.0235 S22: 0.2763 S23: -0.2497 REMARK 3 S31: -0.1061 S32: 0.4057 S33: -0.1669 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4UWD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1290061508. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979500 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29428 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.720 REMARK 200 RESOLUTION RANGE LOW (A) : 47.860 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.72 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.77 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.67000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4BQY REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES PH6.5, 1.7M AMMONIUM SULFATE, REMARK 280 1% DIOXANE, 0.002M MNCL2, SITTING DROP, 293K, VAPOR DIFFUSION, REMARK 280 SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 19.69000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 19.69000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 19.69000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 175 REMARK 465 SER A 176 REMARK 465 HIS A 177 REMARK 465 MET A 178 REMARK 465 ALA A 179 REMARK 465 SER A 180 REMARK 465 PRO A 181 REMARK 465 ASN A 182 REMARK 465 GLY A 183 REMARK 465 GLN A 184 REMARK 465 THR A 185 REMARK 465 LYS A 186 REMARK 465 PRO A 187 REMARK 465 THR A 405 REMARK 465 VAL A 410 REMARK 465 ARG A 411 REMARK 465 VAL A 412 REMARK 465 GLU A 413 REMARK 465 LEU A 414 REMARK 465 ASN A 415 REMARK 465 LYS A 416 REMARK 465 PRO A 417 REMARK 465 SER A 418 REMARK 465 ASP A 419 REMARK 465 SER A 420 REMARK 465 VAL A 421 REMARK 465 GLY A 422 REMARK 465 LYS A 423 REMARK 465 ASP A 424 REMARK 465 VAL A 425 REMARK 465 PHE A 426 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 216 CD CE NZ REMARK 470 GLU A 217 CD OE1 OE2 REMARK 470 GLN A 220 OE1 NE2 REMARK 470 GLN A 221 OE1 NE2 REMARK 470 LYS A 234 CE NZ REMARK 470 LYS A 244 CG CD CE NZ REMARK 470 SER A 247 OG REMARK 470 SER A 248 OG REMARK 470 LYS A 249 CG CD CE NZ REMARK 470 LYS A 291 CE NZ REMARK 470 LYS A 297 NZ REMARK 470 LYS A 337 CD CE NZ REMARK 470 GLN A 352 CG CD OE1 NE2 REMARK 470 LYS A 359 CE NZ REMARK 470 ARG A 370 CD NE CZ NH1 NH2 REMARK 470 LYS A 400 CE NZ REMARK 470 LYS A 402 CE NZ REMARK 470 TYR A 403 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU A 404 CD1 CD2 REMARK 470 GLU A 407 CD OE1 OE2 REMARK 470 LYS A 408 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 197 -57.31 -130.30 REMARK 500 TYR A 197 -57.44 -130.30 REMARK 500 PHE A 346 73.64 -117.12 REMARK 500 TYR A 403 77.05 -118.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 PHE A 353 -10.93 REMARK 500 PHE A 353 15.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 313 NE2 REMARK 620 2 GLU A 315 OE1 92.4 REMARK 620 3 GLU A 315 OE1 92.9 5.1 REMARK 620 4 HIS A 374 NE2 85.6 92.7 87.7 REMARK 620 5 UN9 A 601 O13 101.5 165.4 162.6 83.7 REMARK 620 6 UN9 A 601 N8 88.0 108.6 113.6 158.0 77.0 REMARK 620 7 HOH A2106 O 168.8 79.9 80.1 102.6 87.0 86.9 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UN9 A 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4BQX RELATED DB: PDB REMARK 900 HIF PROLYL HYDROXYLASE 2 (PHD2/ EGLN1) IN COMPLEX WITH MN(II) AND N- REMARK 900 [(1-CHLORO-4-HYDROXYISOQUINOLIN-3-YL) CARBONYL]GLYCINE (IOX3/UN9) REMARK 900 RELATED ID: 4BQY RELATED DB: PDB REMARK 900 HIF PROLYL HYDROXYLASE 2 (PHD2/ EGLN1) IN COMPLEX WITH FE(II) AND N- REMARK 900 [(1-CHLORO-4-HYDROXYISOQUINOLIN-3-YL) CARBONYL]ALANINE REMARK 900 RELATED ID: 3HQR RELATED DB: PDB DBREF 4UWD A 181 426 UNP Q9GZT9 EGLN1_HUMAN 181 426 SEQADV 4UWD GLY A 175 UNP Q9GZT9 EXPRESSION TAG SEQADV 4UWD SER A 176 UNP Q9GZT9 EXPRESSION TAG SEQADV 4UWD HIS A 177 UNP Q9GZT9 EXPRESSION TAG SEQADV 4UWD MET A 178 UNP Q9GZT9 EXPRESSION TAG SEQADV 4UWD ALA A 179 UNP Q9GZT9 EXPRESSION TAG SEQADV 4UWD SER A 180 UNP Q9GZT9 EXPRESSION TAG SEQADV 4UWD GLU A 315 UNP Q9GZT9 ASP 315 ENGINEERED MUTATION SEQRES 1 A 252 GLY SER HIS MET ALA SER PRO ASN GLY GLN THR LYS PRO SEQRES 2 A 252 LEU PRO ALA LEU LYS LEU ALA LEU GLU TYR ILE VAL PRO SEQRES 3 A 252 CYS MET ASN LYS HIS GLY ILE CYS VAL VAL ASP ASP PHE SEQRES 4 A 252 LEU GLY LYS GLU THR GLY GLN GLN ILE GLY ASP GLU VAL SEQRES 5 A 252 ARG ALA LEU HIS ASP THR GLY LYS PHE THR ASP GLY GLN SEQRES 6 A 252 LEU VAL SER GLN LYS SER ASP SER SER LYS ASP ILE ARG SEQRES 7 A 252 GLY ASP LYS ILE THR TRP ILE GLU GLY LYS GLU PRO GLY SEQRES 8 A 252 CYS GLU THR ILE GLY LEU LEU MET SER SER MET ASP ASP SEQRES 9 A 252 LEU ILE ARG HIS CYS ASN GLY LYS LEU GLY SER TYR LYS SEQRES 10 A 252 ILE ASN GLY ARG THR LYS ALA MET VAL ALA CYS TYR PRO SEQRES 11 A 252 GLY ASN GLY THR GLY TYR VAL ARG HIS VAL GLU ASN PRO SEQRES 12 A 252 ASN GLY ASP GLY ARG CYS VAL THR CYS ILE TYR TYR LEU SEQRES 13 A 252 ASN LYS ASP TRP ASP ALA LYS VAL SER GLY GLY ILE LEU SEQRES 14 A 252 ARG ILE PHE PRO GLU GLY LYS ALA GLN PHE ALA ASP ILE SEQRES 15 A 252 GLU PRO LYS PHE ASP ARG LEU LEU PHE PHE TRP SER ASP SEQRES 16 A 252 ARG ARG ASN PRO HIS GLU VAL GLN PRO ALA TYR ALA THR SEQRES 17 A 252 ARG TYR ALA ILE THR VAL TRP TYR PHE ASP ALA ASP GLU SEQRES 18 A 252 ARG ALA ARG ALA LYS VAL LYS TYR LEU THR GLY GLU LYS SEQRES 19 A 252 GLY VAL ARG VAL GLU LEU ASN LYS PRO SER ASP SER VAL SEQRES 20 A 252 GLY LYS ASP VAL PHE HET MN A 501 1 HET UN9 A 601 27 HETNAM MN MANGANESE (II) ION HETNAM UN9 N-[(1-CHLORO-4-HYDROXYISOQUINOLIN-3-YL)CARBONYL]GLYCINE FORMUL 2 MN MN 2+ FORMUL 3 UN9 C12 H9 CL N2 O4 FORMUL 4 HOH *146(H2 O) HELIX 1 1 PRO A 189 TYR A 197 1 9 HELIX 2 2 TYR A 197 GLY A 206 1 10 HELIX 3 3 GLY A 215 THR A 232 1 18 HELIX 4 4 ASP A 246 ASP A 250 5 5 HELIX 5 5 CYS A 266 ASN A 284 1 19 HELIX 6 6 ASP A 335 GLY A 340 1 6 HELIX 7 7 ALA A 393 LYS A 400 1 8 SHEET 1 AA 6 ILE A 207 VAL A 210 0 SHEET 2 AA 6 ARG A 362 TRP A 367 -1 O LEU A 363 N VAL A 210 SHEET 3 AA 6 ARG A 322 TYR A 329 -1 O THR A 325 N PHE A 366 SHEET 4 AA 6 ARG A 383 ASP A 392 -1 O ILE A 386 N TYR A 328 SHEET 5 AA 6 ALA A 298 TYR A 303 -1 O MET A 299 N THR A 387 SHEET 6 AA 6 LYS A 255 ILE A 259 -1 O LYS A 255 N CYS A 302 SHEET 1 AB 5 ILE A 207 VAL A 210 0 SHEET 2 AB 5 ARG A 362 TRP A 367 -1 O LEU A 363 N VAL A 210 SHEET 3 AB 5 ARG A 322 TYR A 329 -1 O THR A 325 N PHE A 366 SHEET 4 AB 5 ARG A 383 ASP A 392 -1 O ILE A 386 N TYR A 328 SHEET 5 AB 5 ILE A 292 ARG A 295 1 N ASN A 293 O PHE A 391 SHEET 1 AC 2 LEU A 240 SER A 242 0 SHEET 2 AC 2 ILE A 251 ARG A 252 -1 O ILE A 251 N VAL A 241 SHEET 1 AD 4 TYR A 310 HIS A 313 0 SHEET 2 AD 4 HIS A 374 VAL A 376 -1 O HIS A 374 N HIS A 313 SHEET 3 AD 4 LEU A 343 ILE A 345 -1 O ARG A 344 N GLU A 375 SHEET 4 AD 4 ALA A 354 ILE A 356 -1 O ALA A 354 N ILE A 345 LINK NE2 HIS A 313 MN MN A 501 1555 1555 2.21 LINK OE1AGLU A 315 MN MN A 501 1555 1555 2.28 LINK OE1BGLU A 315 MN MN A 501 1555 1555 2.22 LINK NE2 HIS A 374 MN MN A 501 1555 1555 2.25 LINK MN MN A 501 O13 UN9 A 601 1555 1555 2.22 LINK MN MN A 501 N8 UN9 A 601 1555 1555 2.28 LINK MN MN A 501 O HOH A2106 1555 1555 2.27 SITE 1 AC1 5 HIS A 313 GLU A 315 HIS A 374 UN9 A 601 SITE 2 AC1 5 HOH A2106 SITE 1 AC2 15 ASP A 254 MET A 299 TYR A 303 TYR A 310 SITE 2 AC2 15 HIS A 313 GLU A 315 TYR A 329 LEU A 343 SITE 3 AC2 15 HIS A 374 VAL A 376 ARG A 383 ARG A 398 SITE 4 AC2 15 MN A 501 HOH A2106 HOH A2146 CRYST1 110.520 110.520 39.380 90.00 90.00 120.00 P 63 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009048 0.005224 0.000000 0.00000 SCALE2 0.000000 0.010448 0.000000 0.00000 SCALE3 0.000000 0.000000 0.025394 0.00000