PDB Short entry for 4WCI HEADER SIGNALING PROTEIN 04-SEP-14 4WCI TITLE CRYSTAL STRUCTURE OF THE 1ST SH3 DOMAIN FROM HUMAN CD2AP (CMS) IN TITLE 2 COMPLEX WITH A PROLINE-RICH PEPTIDE (AA 378-393) FROM HUMAN RIN3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CD2-ASSOCIATED PROTEIN; COMPND 3 CHAIN: A, C, E; COMPND 4 FRAGMENT: UNP RESIDUES 1-60; COMPND 5 SYNONYM: ADAPTER PROTEIN CMS,CAS LIGAND WITH MULTIPLE SH3 DOMAINS; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: RAS AND RAB INTERACTOR 3; COMPND 9 CHAIN: B, D, F; COMPND 10 SYNONYM: RAS INTERACTION/INTERFERENCE PROTEIN 3; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CD2AP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-1; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606 KEYWDS ENDOCYTOSIS ADAPTOR PROTEIN PROTEIN-PEPTIDE BINARY COMPLEX KIDNEY, KEYWDS 2 SIGNALING PROTEIN, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS KEYWDS 3 CONSORTIUM, SGC EXPDTA X-RAY DIFFRACTION AUTHOR E.ROUKA,P.C.SIMISTER,M.JANNING,K.H.KIRSCH,T.KROJER,S.KNAPP,F.VON AUTHOR 2 DELFT,C.H.ARROWSMITH,A.M.EDWARDS,C.BOUNTRA,S.M.FELLER,STRUCTURAL AUTHOR 3 GENOMICS CONSORTIUM (SGC) REVDAT 3 10-JAN-24 4WCI 1 REMARK REVDAT 2 24-FEB-16 4WCI 1 JRNL REVDAT 1 19-AUG-15 4WCI 0 JRNL AUTH E.ROUKA,P.C.SIMISTER,M.JANNING,J.KUMBRINK,T.KONSTANTINOU, JRNL AUTH 2 J.R.MUNIZ,D.JOSHI,N.O'REILLY,R.VOLKMER,B.RITTER,S.KNAPP, JRNL AUTH 3 F.VON DELFT,K.H.KIRSCH,S.M.FELLER JRNL TITL DIFFERENTIAL RECOGNITION PREFERENCES OF THE THREE SRC JRNL TITL 2 HOMOLOGY 3 (SH3) DOMAINS FROM THE ADAPTOR CD2-ASSOCIATED JRNL TITL 3 PROTEIN (CD2AP) AND DIRECT ASSOCIATION WITH RAS AND RAB JRNL TITL 4 INTERACTOR 3 (RIN3). JRNL REF J.BIOL.CHEM. V. 290 25275 2015 JRNL REFN ESSN 1083-351X JRNL PMID 26296892 JRNL DOI 10.1074/JBC.M115.637207 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.19 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 29619 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 1505 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.2063 - 3.6691 0.98 2627 151 0.1970 0.2258 REMARK 3 2 3.6691 - 2.9124 0.99 2629 135 0.1700 0.1757 REMARK 3 3 2.9124 - 2.5442 0.97 2572 118 0.1867 0.1974 REMARK 3 4 2.5442 - 2.3116 0.99 2575 143 0.1852 0.2211 REMARK 3 5 2.3116 - 2.1459 0.99 2585 155 0.1840 0.2362 REMARK 3 6 2.1459 - 2.0194 0.99 2615 137 0.1795 0.1944 REMARK 3 7 2.0194 - 1.9183 0.96 2505 114 0.1900 0.1973 REMARK 3 8 1.9183 - 1.8348 0.99 2575 133 0.1938 0.2196 REMARK 3 9 1.8348 - 1.7641 0.98 2583 135 0.2198 0.2679 REMARK 3 10 1.7641 - 1.7033 0.97 2497 145 0.2445 0.2955 REMARK 3 11 1.7033 - 1.6500 0.91 2351 139 0.2777 0.3212 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.800 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1868 REMARK 3 ANGLE : 1.010 2535 REMARK 3 CHIRALITY : 0.044 267 REMARK 3 PLANARITY : 0.005 336 REMARK 3 DIHEDRAL : 12.054 749 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 0 THROUGH 58) REMARK 3 ORIGIN FOR THE GROUP (A): -9.2841 4.0042 -10.9796 REMARK 3 T TENSOR REMARK 3 T11: 0.1150 T22: 0.0740 REMARK 3 T33: 0.0841 T12: 0.0050 REMARK 3 T13: -0.0048 T23: 0.0021 REMARK 3 L TENSOR REMARK 3 L11: 2.2893 L22: 2.4978 REMARK 3 L33: 1.3748 L12: 0.0943 REMARK 3 L13: -0.3303 L23: 0.3635 REMARK 3 S TENSOR REMARK 3 S11: 0.0065 S12: 0.1300 S13: -0.0449 REMARK 3 S21: -0.1093 S22: -0.0185 S23: 0.0698 REMARK 3 S31: -0.0032 S32: -0.0220 S33: 0.0064 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 380 THROUGH 389) REMARK 3 ORIGIN FOR THE GROUP (A): -11.9408 15.9392 -8.6300 REMARK 3 T TENSOR REMARK 3 T11: 0.1372 T22: 0.0774 REMARK 3 T33: 0.1274 T12: 0.0284 REMARK 3 T13: -0.0057 T23: -0.0341 REMARK 3 L TENSOR REMARK 3 L11: 8.0716 L22: 5.9502 REMARK 3 L33: 2.4067 L12: 2.4098 REMARK 3 L13: 1.0838 L23: 0.2923 REMARK 3 S TENSOR REMARK 3 S11: 0.0943 S12: -0.0441 S13: 0.4604 REMARK 3 S21: -0.0018 S22: -0.1026 S23: 0.1266 REMARK 3 S31: -0.3165 S32: -0.1725 S33: 0.0095 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN 'C' AND RESID -4 THROUGH 58) REMARK 3 ORIGIN FOR THE GROUP (A): -3.5861 -18.8426 -11.7900 REMARK 3 T TENSOR REMARK 3 T11: 0.1151 T22: 0.0576 REMARK 3 T33: 0.0833 T12: 0.0036 REMARK 3 T13: 0.0053 T23: -0.0207 REMARK 3 L TENSOR REMARK 3 L11: 2.2033 L22: 0.5804 REMARK 3 L33: 1.1299 L12: 0.6683 REMARK 3 L13: -0.5567 L23: -0.6883 REMARK 3 S TENSOR REMARK 3 S11: -0.0372 S12: 0.1099 S13: -0.1077 REMARK 3 S21: -0.0693 S22: 0.0158 S23: -0.0742 REMARK 3 S31: 0.1069 S32: -0.0128 S33: 0.0136 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN 'D' AND RESID 379 THROUGH 388) REMARK 3 ORIGIN FOR THE GROUP (A): -14.0624 -25.7125 -9.3881 REMARK 3 T TENSOR REMARK 3 T11: 0.1159 T22: 0.0719 REMARK 3 T33: 0.1713 T12: -0.0382 REMARK 3 T13: -0.0035 T23: 0.0005 REMARK 3 L TENSOR REMARK 3 L11: 5.1459 L22: 6.9862 REMARK 3 L33: 5.8219 L12: -0.4832 REMARK 3 L13: 0.9875 L23: -1.3759 REMARK 3 S TENSOR REMARK 3 S11: 0.1674 S12: 0.1543 S13: -0.1941 REMARK 3 S21: -0.4296 S22: -0.0568 S23: 0.4448 REMARK 3 S31: 0.2846 S32: -0.1095 S33: -0.1145 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN 'E' AND RESID -4 THROUGH 58) REMARK 3 ORIGIN FOR THE GROUP (A): 13.0624 -2.4457 -11.9963 REMARK 3 T TENSOR REMARK 3 T11: 0.1091 T22: 0.0952 REMARK 3 T33: 0.0991 T12: -0.0029 REMARK 3 T13: 0.0236 T23: 0.0189 REMARK 3 L TENSOR REMARK 3 L11: 2.4839 L22: 1.7153 REMARK 3 L33: 2.0087 L12: -0.9979 REMARK 3 L13: 1.0769 L23: -0.0083 REMARK 3 S TENSOR REMARK 3 S11: 0.0282 S12: 0.1817 S13: 0.1696 REMARK 3 S21: -0.1035 S22: -0.0402 S23: -0.0301 REMARK 3 S31: -0.0916 S32: 0.1317 S33: 0.0189 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN 'F' AND RESID 379 THROUGH 389) REMARK 3 ORIGIN FOR THE GROUP (A): 24.2386 -8.1031 -9.4071 REMARK 3 T TENSOR REMARK 3 T11: 0.0949 T22: 0.1063 REMARK 3 T33: 0.1075 T12: 0.0108 REMARK 3 T13: -0.0064 T23: 0.0151 REMARK 3 L TENSOR REMARK 3 L11: 4.5903 L22: 8.2124 REMARK 3 L33: 3.8979 L12: -1.0701 REMARK 3 L13: -0.3710 L23: 1.1016 REMARK 3 S TENSOR REMARK 3 S11: -0.0075 S12: 0.2130 S13: -0.0581 REMARK 3 S21: -0.1433 S22: 0.1483 S23: -0.3457 REMARK 3 S31: 0.0714 S32: 0.1489 S33: -0.1437 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4WCI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1000203544. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-DEC-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9173 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29622 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 48.190 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.13200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.47900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2J6F REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M CA(AC) PH 4.2, 0.2 M LI2SO4 AND REMARK 280 25% PEG 10 000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 47.76300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.68100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 47.76300 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 27.68100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH C 235 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 PRO A -3 REMARK 465 LEU A -2 REMARK 465 GLY A -1 REMARK 465 ARG A 59 REMARK 465 GLU A 60 REMARK 465 ALA B 378 REMARK 465 LYS B 379 REMARK 465 LYS B 380 REMARK 465 VAL B 391 REMARK 465 SER B 392 REMARK 465 GLU B 393 REMARK 465 ARG C 59 REMARK 465 GLU C 60 REMARK 465 ALA D 378 REMARK 465 LYS D 379 REMARK 465 ARG D 390 REMARK 465 VAL D 391 REMARK 465 SER D 392 REMARK 465 GLU D 393 REMARK 465 ARG E 59 REMARK 465 GLU E 60 REMARK 465 ALA F 378 REMARK 465 LYS F 379 REMARK 465 VAL F 391 REMARK 465 SER F 392 REMARK 465 GLU F 393 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B 390 CG CD NE CZ NH1 NH2 REMARK 470 GLN C 33 CG CD OE1 NE2 REMARK 470 LYS C 58 CG CD CE NZ REMARK 470 LYS D 380 CG CD CE NZ REMARK 470 LYS F 380 CG CD CE NZ REMARK 470 ARG F 390 CA C O CB CG CD NE REMARK 470 ARG F 390 CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 217 O HOH E 120 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 32 -158.37 -96.41 REMARK 500 LEU C 32 -149.30 -98.64 REMARK 500 LEU C 32 -149.30 -100.14 REMARK 500 LEU E 32 -152.42 -94.25 REMARK 500 LEU E 32 -152.42 -94.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH D 416 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH D 417 DISTANCE = 5.99 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3U23 RELATED DB: PDB DBREF 4WCI A 1 60 UNP Q9Y5K6 CD2AP_HUMAN 1 60 DBREF 4WCI B 378 393 UNP Q8TB24 RIN3_HUMAN 378 393 DBREF 4WCI C 1 60 UNP Q9Y5K6 CD2AP_HUMAN 1 60 DBREF 4WCI D 378 393 UNP Q8TB24 RIN3_HUMAN 378 393 DBREF 4WCI E 1 60 UNP Q9Y5K6 CD2AP_HUMAN 1 60 DBREF 4WCI F 378 393 UNP Q8TB24 RIN3_HUMAN 378 393 SEQADV 4WCI GLY A -4 UNP Q9Y5K6 EXPRESSION TAG SEQADV 4WCI PRO A -3 UNP Q9Y5K6 EXPRESSION TAG SEQADV 4WCI LEU A -2 UNP Q9Y5K6 EXPRESSION TAG SEQADV 4WCI GLY A -1 UNP Q9Y5K6 EXPRESSION TAG SEQADV 4WCI SER A 0 UNP Q9Y5K6 EXPRESSION TAG SEQADV 4WCI GLY C -4 UNP Q9Y5K6 EXPRESSION TAG SEQADV 4WCI PRO C -3 UNP Q9Y5K6 EXPRESSION TAG SEQADV 4WCI LEU C -2 UNP Q9Y5K6 EXPRESSION TAG SEQADV 4WCI GLY C -1 UNP Q9Y5K6 EXPRESSION TAG SEQADV 4WCI SER C 0 UNP Q9Y5K6 EXPRESSION TAG SEQADV 4WCI GLY E -4 UNP Q9Y5K6 EXPRESSION TAG SEQADV 4WCI PRO E -3 UNP Q9Y5K6 EXPRESSION TAG SEQADV 4WCI LEU E -2 UNP Q9Y5K6 EXPRESSION TAG SEQADV 4WCI GLY E -1 UNP Q9Y5K6 EXPRESSION TAG SEQADV 4WCI SER E 0 UNP Q9Y5K6 EXPRESSION TAG SEQRES 1 A 65 GLY PRO LEU GLY SER MET VAL ASP TYR ILE VAL GLU TYR SEQRES 2 A 65 ASP TYR ASP ALA VAL HIS ASP ASP GLU LEU THR ILE ARG SEQRES 3 A 65 VAL GLY GLU ILE ILE ARG ASN VAL LYS LYS LEU GLN GLU SEQRES 4 A 65 GLU GLY TRP LEU GLU GLY GLU LEU ASN GLY ARG ARG GLY SEQRES 5 A 65 MET PHE PRO ASP ASN PHE VAL LYS GLU ILE LYS ARG GLU SEQRES 1 B 16 ALA LYS LYS ASN LEU PRO THR ALA PRO PRO ARG ARG ARG SEQRES 2 B 16 VAL SER GLU SEQRES 1 C 65 GLY PRO LEU GLY SER MET VAL ASP TYR ILE VAL GLU TYR SEQRES 2 C 65 ASP TYR ASP ALA VAL HIS ASP ASP GLU LEU THR ILE ARG SEQRES 3 C 65 VAL GLY GLU ILE ILE ARG ASN VAL LYS LYS LEU GLN GLU SEQRES 4 C 65 GLU GLY TRP LEU GLU GLY GLU LEU ASN GLY ARG ARG GLY SEQRES 5 C 65 MET PHE PRO ASP ASN PHE VAL LYS GLU ILE LYS ARG GLU SEQRES 1 D 16 ALA LYS LYS ASN LEU PRO THR ALA PRO PRO ARG ARG ARG SEQRES 2 D 16 VAL SER GLU SEQRES 1 E 65 GLY PRO LEU GLY SER MET VAL ASP TYR ILE VAL GLU TYR SEQRES 2 E 65 ASP TYR ASP ALA VAL HIS ASP ASP GLU LEU THR ILE ARG SEQRES 3 E 65 VAL GLY GLU ILE ILE ARG ASN VAL LYS LYS LEU GLN GLU SEQRES 4 E 65 GLU GLY TRP LEU GLU GLY GLU LEU ASN GLY ARG ARG GLY SEQRES 5 E 65 MET PHE PRO ASP ASN PHE VAL LYS GLU ILE LYS ARG GLU SEQRES 1 F 16 ALA LYS LYS ASN LEU PRO THR ALA PRO PRO ARG ARG ARG SEQRES 2 F 16 VAL SER GLU HET SO4 A 101 5 HET SO4 C 101 5 HETNAM SO4 SULFATE ION FORMUL 7 SO4 2(O4 S 2-) FORMUL 9 HOH *279(H2 O) SHEET 1 AA1 5 ARG A 45 PRO A 50 0 SHEET 2 AA1 5 TRP A 37 LEU A 42 -1 N LEU A 42 O ARG A 45 SHEET 3 AA1 5 ILE A 25 LYS A 30 -1 N ARG A 27 O GLU A 41 SHEET 4 AA1 5 TYR A 4 VAL A 6 -1 N TYR A 4 O ILE A 26 SHEET 5 AA1 5 VAL A 54 GLU A 56 -1 O LYS A 55 N ILE A 5 SHEET 1 AA2 5 ARG C 45 PRO C 50 0 SHEET 2 AA2 5 TRP C 37 LEU C 42 -1 N LEU C 42 O ARG C 45 SHEET 3 AA2 5 ILE C 25 LYS C 30 -1 N ARG C 27 O GLU C 41 SHEET 4 AA2 5 TYR C 4 VAL C 6 -1 N TYR C 4 O ILE C 26 SHEET 5 AA2 5 VAL C 54 GLU C 56 -1 O LYS C 55 N ILE C 5 SHEET 1 AA3 5 ARG E 45 PRO E 50 0 SHEET 2 AA3 5 TRP E 37 LEU E 42 -1 N LEU E 42 O ARG E 45 SHEET 3 AA3 5 ILE E 25 LYS E 30 -1 N ARG E 27 O GLU E 41 SHEET 4 AA3 5 TYR E 4 VAL E 6 -1 N TYR E 4 O ILE E 26 SHEET 5 AA3 5 VAL E 54 GLU E 56 -1 O LYS E 55 N ILE E 5 SITE 1 AC1 9 ARG A 27 HOH A 232 HOH A 234 HOH A 237 SITE 2 AC1 9 ARG C 27 HOH C 236 HOH C 248 ARG E 27 SITE 3 AC1 9 HOH E 130 SITE 1 AC2 3 ARG A 27 ARG C 27 ARG E 27 CRYST1 95.526 55.362 64.557 90.00 131.72 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010468 0.000000 0.009334 0.00000 SCALE2 0.000000 0.018063 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020753 0.00000