PDB Short entry for 4WJ9 HEADER OXIDOREDUCTASE 29-SEP-14 4WJ9 TITLE STRUCTURE OF HUMAN APO ALDH1A1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RETINAL DEHYDROGENASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RALDH1,ALDH-E1,ALHDII,ALDEHYDE DEHYDROGENASE FAMILY 1 MEMBER COMPND 5 A1,ALDEHYDE DEHYDROGENASE,CYTOSOLIC; COMPND 6 EC: 1.2.1.36; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ALDH1A1, ALDC, ALDH1, PUMB1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS OXIDOREDUCTASE ALDEHYDE DEHYDROGENASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR C.A.MORGAN,T.D.HURLEY REVDAT 5 27-DEC-23 4WJ9 1 REMARK LINK REVDAT 4 11-DEC-19 4WJ9 1 REMARK REVDAT 3 06-SEP-17 4WJ9 1 SOURCE REMARK REVDAT 2 06-MAY-15 4WJ9 1 JRNL REVDAT 1 10-DEC-14 4WJ9 0 JRNL AUTH C.A.MORGAN,T.D.HURLEY JRNL TITL DEVELOPMENT OF A HIGH-THROUGHPUT IN VITRO ASSAY TO IDENTIFY JRNL TITL 2 SELECTIVE INHIBITORS FOR HUMAN ALDH1A1. JRNL REF CHEM.BIOL.INTERACT. V. 234 29 2015 JRNL REFN ISSN 0009-2797 JRNL PMID 25450233 JRNL DOI 10.1016/J.CBI.2014.10.028 REMARK 2 REMARK 2 RESOLUTION. 1.74 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.74 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 109.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 48862 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2631 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.74 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.79 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3427 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.03 REMARK 3 BIN R VALUE (WORKING SET) : 0.2560 REMARK 3 BIN FREE R VALUE SET COUNT : 171 REMARK 3 BIN FREE R VALUE : 0.2540 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3790 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 246 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.58000 REMARK 3 B22 (A**2) : -0.58000 REMARK 3 B33 (A**2) : 1.16000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.117 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.111 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.084 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.184 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3936 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3765 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5327 ; 1.193 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8703 ; 0.732 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 503 ; 5.534 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 166 ;36.854 ;24.699 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 678 ;13.898 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;16.519 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 589 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4474 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 871 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1990 ; 0.677 ; 1.523 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1988 ; 0.660 ; 1.522 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2490 ; 1.080 ; 2.281 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2491 ; 1.083 ; 2.281 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1946 ; 1.500 ; 1.678 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1938 ; 1.034 ; 1.672 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2833 ; 1.664 ; 2.452 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4553 ; 4.999 ;13.084 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4477 ; 4.947 ;12.719 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 9 A 49 REMARK 3 ORIGIN FOR THE GROUP (A): 51.2540 -33.3357 27.2727 REMARK 3 T TENSOR REMARK 3 T11: 0.3102 T22: 0.1356 REMARK 3 T33: 0.3218 T12: 0.0828 REMARK 3 T13: 0.2295 T23: 0.1881 REMARK 3 L TENSOR REMARK 3 L11: 3.7080 L22: 0.8635 REMARK 3 L33: 1.5819 L12: -0.0897 REMARK 3 L13: 0.0139 L23: -0.6840 REMARK 3 S TENSOR REMARK 3 S11: -0.1588 S12: -0.3810 S13: -0.5961 REMARK 3 S21: 0.3002 S22: -0.0019 S23: 0.1308 REMARK 3 S31: 0.1865 S32: 0.0546 S33: 0.1608 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 50 A 224 REMARK 3 ORIGIN FOR THE GROUP (A): 56.5545 -19.6853 15.5918 REMARK 3 T TENSOR REMARK 3 T11: 0.1287 T22: 0.0908 REMARK 3 T33: 0.1505 T12: 0.0487 REMARK 3 T13: 0.1022 T23: 0.0814 REMARK 3 L TENSOR REMARK 3 L11: 1.0943 L22: 1.0462 REMARK 3 L33: 0.4476 L12: 0.0124 REMARK 3 L13: -0.2696 L23: -0.1441 REMARK 3 S TENSOR REMARK 3 S11: -0.2126 S12: -0.2291 S13: -0.3507 REMARK 3 S21: 0.2173 S22: 0.0361 S23: 0.0542 REMARK 3 S31: 0.0667 S32: 0.0160 S33: 0.1765 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 225 A 282 REMARK 3 ORIGIN FOR THE GROUP (A): 49.3989 -7.3866 26.9528 REMARK 3 T TENSOR REMARK 3 T11: 0.2058 T22: 0.1813 REMARK 3 T33: 0.0673 T12: 0.0722 REMARK 3 T13: 0.0784 T23: 0.0526 REMARK 3 L TENSOR REMARK 3 L11: 3.3100 L22: 0.5403 REMARK 3 L33: 0.4554 L12: 0.0659 REMARK 3 L13: 0.2650 L23: 0.0712 REMARK 3 S TENSOR REMARK 3 S11: -0.1550 S12: -0.5457 S13: -0.0160 REMARK 3 S21: 0.2992 S22: 0.0455 S23: 0.1312 REMARK 3 S31: 0.0137 S32: -0.0303 S33: 0.1094 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 283 A 295 REMARK 3 ORIGIN FOR THE GROUP (A): 22.8176 -13.4307 12.8308 REMARK 3 T TENSOR REMARK 3 T11: 0.0622 T22: 0.0442 REMARK 3 T33: 0.1942 T12: -0.0099 REMARK 3 T13: 0.0645 T23: 0.0347 REMARK 3 L TENSOR REMARK 3 L11: 5.5094 L22: 2.3123 REMARK 3 L33: 9.6724 L12: -0.9244 REMARK 3 L13: 2.5342 L23: -0.8263 REMARK 3 S TENSOR REMARK 3 S11: -0.1180 S12: -0.2354 S13: -0.1257 REMARK 3 S21: -0.0099 S22: 0.2338 S23: 0.3262 REMARK 3 S31: 0.4313 S32: -0.2688 S33: -0.1158 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 296 A 408 REMARK 3 ORIGIN FOR THE GROUP (A): 25.0653 -16.2332 26.9374 REMARK 3 T TENSOR REMARK 3 T11: 0.2191 T22: 0.2187 REMARK 3 T33: 0.3006 T12: 0.0667 REMARK 3 T13: 0.2491 T23: 0.0868 REMARK 3 L TENSOR REMARK 3 L11: 2.0526 L22: 2.5174 REMARK 3 L33: 0.9149 L12: -0.2857 REMARK 3 L13: -0.0975 L23: -0.8706 REMARK 3 S TENSOR REMARK 3 S11: -0.2088 S12: -0.3546 S13: -0.3019 REMARK 3 S21: 0.3564 S22: 0.1250 S23: 0.4306 REMARK 3 S31: 0.0138 S32: -0.1157 S33: 0.0838 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 409 A 483 REMARK 3 ORIGIN FOR THE GROUP (A): 33.5850 -1.6687 14.3365 REMARK 3 T TENSOR REMARK 3 T11: 0.0974 T22: 0.0846 REMARK 3 T33: 0.1116 T12: 0.0441 REMARK 3 T13: 0.0611 T23: 0.0065 REMARK 3 L TENSOR REMARK 3 L11: 1.6536 L22: 1.5657 REMARK 3 L33: 0.9551 L12: 0.2404 REMARK 3 L13: -0.1520 L23: -0.2719 REMARK 3 S TENSOR REMARK 3 S11: -0.1887 S12: -0.1935 S13: 0.0227 REMARK 3 S21: 0.1649 S22: 0.1310 S23: 0.3421 REMARK 3 S31: -0.0176 S32: -0.0314 S33: 0.0576 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 484 A 501 REMARK 3 ORIGIN FOR THE GROUP (A): 69.7685 3.9070 5.0272 REMARK 3 T TENSOR REMARK 3 T11: 0.0433 T22: 0.0308 REMARK 3 T33: 0.0426 T12: -0.0026 REMARK 3 T13: -0.0287 T23: 0.0154 REMARK 3 L TENSOR REMARK 3 L11: 1.6174 L22: 3.0768 REMARK 3 L33: 1.7855 L12: 0.8494 REMARK 3 L13: -1.0292 L23: -1.6294 REMARK 3 S TENSOR REMARK 3 S11: -0.0408 S12: -0.0251 S13: 0.1787 REMARK 3 S21: 0.1545 S22: 0.1099 S23: 0.0704 REMARK 3 S31: -0.0713 S32: -0.0150 S33: -0.0691 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4WJ9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1000203904. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2-7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48862 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.740 REMARK 200 RESOLUTION RANGE LOW (A) : 109.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 9.600 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 31.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.74 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 97.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.50 REMARK 200 R MERGE FOR SHELL (I) : 0.59000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3350, SODIUM CHLORIDE, 100 MM BIS REMARK 280 TRIS BUFFER, YTTERBIUM CHLORIDE, SITTING DROP, PH 7.0, REMARK 280 EVAPORATION, TEMPERATURE 300K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 CYCLIC POINT SYMMETRY (SCHOENFLIES SYMBOL = C). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 21600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 60470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -134.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 109.29700 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 109.29700 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 GLY A 5 REMARK 465 THR A 6 REMARK 465 PRO A 7 REMARK 465 ASP A 8 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 13 CG CD1 CD2 REMARK 470 THR A 14 OG1 CG2 REMARK 470 ASP A 15 CG OD1 OD2 REMARK 470 LYS A 17 CG CD CE NZ REMARK 470 GLU A 349 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 936 O HOH A 944 1.03 REMARK 500 YB YB A 601 O HOH A 944 1.78 REMARK 500 YB YB A 601 O HOH A 936 1.96 REMARK 500 O HOH A 785 O HOH A 946 2.02 REMARK 500 O HOH A 752 O HOH A 785 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 50 -178.21 -171.71 REMARK 500 SER A 121 -61.56 -109.45 REMARK 500 THR A 228 -74.85 -102.56 REMARK 500 SER A 261 -90.02 -94.43 REMARK 500 LEU A 270 -160.86 -122.41 REMARK 500 GLN A 301 53.63 -94.71 REMARK 500 LYS A 470 -136.75 58.49 REMARK 500 LEU A 478 177.62 69.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 YB A 601 YB REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 752 O REMARK 620 2 HOH A 776 O 131.5 REMARK 620 3 HOH A 776 O 76.6 101.5 REMARK 620 4 HOH A 785 O 56.1 161.0 61.3 REMARK 620 5 HOH A 945 O 127.4 100.5 86.5 72.0 REMARK 620 6 HOH A 946 O 63.5 144.3 114.1 53.0 79.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue YB A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 602 DBREF 4WJ9 A 1 501 UNP P00352 AL1A1_HUMAN 1 501 SEQADV 4WJ9 SER A 121 UNP P00352 ASN 121 ENGINEERED MUTATION SEQRES 1 A 501 MET SER SER SER GLY THR PRO ASP LEU PRO VAL LEU LEU SEQRES 2 A 501 THR ASP LEU LYS ILE GLN TYR THR LYS ILE PHE ILE ASN SEQRES 3 A 501 ASN GLU TRP HIS ASP SER VAL SER GLY LYS LYS PHE PRO SEQRES 4 A 501 VAL PHE ASN PRO ALA THR GLU GLU GLU LEU CYS GLN VAL SEQRES 5 A 501 GLU GLU GLY ASP LYS GLU ASP VAL ASP LYS ALA VAL LYS SEQRES 6 A 501 ALA ALA ARG GLN ALA PHE GLN ILE GLY SER PRO TRP ARG SEQRES 7 A 501 THR MET ASP ALA SER GLU ARG GLY ARG LEU LEU TYR LYS SEQRES 8 A 501 LEU ALA ASP LEU ILE GLU ARG ASP ARG LEU LEU LEU ALA SEQRES 9 A 501 THR MET GLU SER MET ASN GLY GLY LYS LEU TYR SER ASN SEQRES 10 A 501 ALA TYR LEU SER ASP LEU ALA GLY CYS ILE LYS THR LEU SEQRES 11 A 501 ARG TYR CYS ALA GLY TRP ALA ASP LYS ILE GLN GLY ARG SEQRES 12 A 501 THR ILE PRO ILE ASP GLY ASN PHE PHE THR TYR THR ARG SEQRES 13 A 501 HIS GLU PRO ILE GLY VAL CYS GLY GLN ILE ILE PRO TRP SEQRES 14 A 501 ASN PHE PRO LEU VAL MET LEU ILE TRP LYS ILE GLY PRO SEQRES 15 A 501 ALA LEU SER CYS GLY ASN THR VAL VAL VAL LYS PRO ALA SEQRES 16 A 501 GLU GLN THR PRO LEU THR ALA LEU HIS VAL ALA SER LEU SEQRES 17 A 501 ILE LYS GLU ALA GLY PHE PRO PRO GLY VAL VAL ASN ILE SEQRES 18 A 501 VAL PRO GLY TYR GLY PRO THR ALA GLY ALA ALA ILE SER SEQRES 19 A 501 SER HIS MET ASP ILE ASP LYS VAL ALA PHE THR GLY SER SEQRES 20 A 501 THR GLU VAL GLY LYS LEU ILE LYS GLU ALA ALA GLY LYS SEQRES 21 A 501 SER ASN LEU LYS ARG VAL THR LEU GLU LEU GLY GLY LYS SEQRES 22 A 501 SER PRO CYS ILE VAL LEU ALA ASP ALA ASP LEU ASP ASN SEQRES 23 A 501 ALA VAL GLU PHE ALA HIS HIS GLY VAL PHE TYR HIS GLN SEQRES 24 A 501 GLY GLN CYS CYS ILE ALA ALA SER ARG ILE PHE VAL GLU SEQRES 25 A 501 GLU SER ILE TYR ASP GLU PHE VAL ARG ARG SER VAL GLU SEQRES 26 A 501 ARG ALA LYS LYS TYR ILE LEU GLY ASN PRO LEU THR PRO SEQRES 27 A 501 GLY VAL THR GLN GLY PRO GLN ILE ASP LYS GLU GLN TYR SEQRES 28 A 501 ASP LYS ILE LEU ASP LEU ILE GLU SER GLY LYS LYS GLU SEQRES 29 A 501 GLY ALA LYS LEU GLU CYS GLY GLY GLY PRO TRP GLY ASN SEQRES 30 A 501 LYS GLY TYR PHE VAL GLN PRO THR VAL PHE SER ASN VAL SEQRES 31 A 501 THR ASP GLU MET ARG ILE ALA LYS GLU GLU ILE PHE GLY SEQRES 32 A 501 PRO VAL GLN GLN ILE MET LYS PHE LYS SER LEU ASP ASP SEQRES 33 A 501 VAL ILE LYS ARG ALA ASN ASN THR PHE TYR GLY LEU SER SEQRES 34 A 501 ALA GLY VAL PHE THR LYS ASP ILE ASP LYS ALA ILE THR SEQRES 35 A 501 ILE SER SER ALA LEU GLN ALA GLY THR VAL TRP VAL ASN SEQRES 36 A 501 CYS TYR GLY VAL VAL SER ALA GLN CYS PRO PHE GLY GLY SEQRES 37 A 501 PHE LYS MET SER GLY ASN GLY ARG GLU LEU GLY GLU TYR SEQRES 38 A 501 GLY PHE HIS GLU TYR THR GLU VAL LYS THR VAL THR VAL SEQRES 39 A 501 LYS ILE SER GLN LYS ASN SER HET YB A 601 1 HET CL A 602 1 HETNAM YB YTTERBIUM (III) ION HETNAM CL CHLORIDE ION FORMUL 2 YB YB 3+ FORMUL 3 CL CL 1- FORMUL 4 HOH *246(H2 O) HELIX 1 AA1 ASP A 56 GLN A 72 1 17 HELIX 2 AA2 SER A 75 MET A 80 1 6 HELIX 3 AA3 ASP A 81 ASP A 99 1 19 HELIX 4 AA4 ASP A 99 GLY A 112 1 14 HELIX 5 AA5 LEU A 114 SER A 121 1 8 HELIX 6 AA6 SER A 121 ALA A 137 1 17 HELIX 7 AA7 ASP A 138 ILE A 140 5 3 HELIX 8 AA8 PHE A 171 CYS A 186 1 16 HELIX 9 AA9 PRO A 199 GLY A 213 1 15 HELIX 10 AB1 THR A 228 HIS A 236 1 9 HELIX 11 AB2 SER A 247 SER A 261 1 15 HELIX 12 AB3 ASP A 283 TYR A 297 1 15 HELIX 13 AB4 HIS A 298 GLN A 301 5 4 HELIX 14 AB5 GLU A 313 LYS A 328 1 16 HELIX 15 AB6 ASP A 347 GLU A 364 1 18 HELIX 16 AB7 MET A 394 GLU A 399 1 6 HELIX 17 AB8 SER A 413 ASN A 423 1 11 HELIX 18 AB9 ASP A 436 LEU A 447 1 12 HELIX 19 AC1 PHE A 469 MET A 471 5 3 HELIX 20 AC2 LEU A 478 HIS A 484 1 7 SHEET 1 AA1 2 ILE A 23 ILE A 25 0 SHEET 2 AA1 2 GLU A 28 HIS A 30 -1 O HIS A 30 N ILE A 23 SHEET 1 AA2 2 LYS A 37 PHE A 41 0 SHEET 2 AA2 2 GLU A 48 GLU A 53 -1 O LEU A 49 N VAL A 40 SHEET 1 AA3 3 THR A 144 ILE A 145 0 SHEET 2 AA3 3 PHE A 151 PRO A 159 -1 O THR A 153 N ILE A 145 SHEET 3 AA3 3 THR A 487 LYS A 495 -1 O VAL A 494 N PHE A 152 SHEET 1 AA4 6 VAL A 219 ILE A 221 0 SHEET 2 AA4 6 THR A 189 LYS A 193 1 N VAL A 192 O ASN A 220 SHEET 3 AA4 6 VAL A 162 ILE A 166 1 N GLN A 165 O LYS A 193 SHEET 4 AA4 6 LYS A 241 THR A 245 1 O LYS A 241 N GLY A 164 SHEET 5 AA4 6 ARG A 265 GLU A 269 1 O ARG A 265 N VAL A 242 SHEET 6 AA4 6 GLY A 473 ASN A 474 -1 O ASN A 474 N LEU A 268 SHEET 1 AA5 7 LYS A 367 CYS A 370 0 SHEET 2 AA5 7 THR A 385 SER A 388 -1 O VAL A 386 N GLU A 369 SHEET 3 AA5 7 VAL A 405 PHE A 411 1 O GLN A 406 N THR A 385 SHEET 4 AA5 7 ARG A 308 GLU A 312 1 N ILE A 309 O MET A 409 SHEET 5 AA5 7 PRO A 275 VAL A 278 1 N VAL A 278 O PHE A 310 SHEET 6 AA5 7 SER A 429 PHE A 433 1 O PHE A 433 N ILE A 277 SHEET 7 AA5 7 THR A 451 VAL A 454 1 O TRP A 453 N ALA A 430 SHEET 1 AA6 2 PRO A 374 TRP A 375 0 SHEET 2 AA6 2 PHE A 381 VAL A 382 -1 O PHE A 381 N TRP A 375 LINK YB YB A 601 O HOH A 752 1555 1555 2.21 LINK YB YB A 601 O HOH A 776 1555 1555 2.73 LINK YB YB A 601 O HOH A 776 1555 8556 2.22 LINK YB YB A 601 O HOH A 785 1555 1555 2.22 LINK YB YB A 601 O HOH A 945 1555 1555 2.23 LINK YB YB A 601 O HOH A 946 1555 1555 2.29 SITE 1 AC1 7 HOH A 752 HOH A 776 HOH A 785 HOH A 936 SITE 2 AC1 7 HOH A 944 HOH A 945 HOH A 946 SITE 1 AC2 4 ARG A 143 THR A 155 HIS A 157 HOH A 750 CRYST1 109.297 109.297 83.236 90.00 90.00 90.00 P 4 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009149 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009149 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012014 0.00000