PDB Short entry for 4WSQ HEADER TRANSFERASE 28-OCT-14 4WSQ TITLE CRYSTAL STRUCTURE OF ADAPTOR PROTEIN 2 ASSOCIATED KINASE (AAK1) IN TITLE 2 COMPLEX WITH SMALL MOLECULE INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: AP2-ASSOCIATED PROTEIN KINASE 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: KINASE DOMAIN, UNP RESIDUES 29-345; COMPND 5 SYNONYM: ADAPTOR-ASSOCIATED KINASE 1; COMPND 6 EC: 2.7.11.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: AAK1, KIAA1048; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: R3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC-CTH0 KEYWDS KINASE, SMALL-MOLECULE, CATALYTIC DOMAIN, PROTEIN KINASE, PROTEIN KEYWDS 2 BINDING, PROTEIN KINASE INHIBITORS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR F.J.SORRELL,J.M.ELKINS,T.KROJER,E.WILLIAMS,K.ABDUL,O.GILEADI,F.VON AUTHOR 2 DELFT,C.H.ARROWSMITH,A.M.EDWARDS,C.BOUNTRA,S.KNAPP,STRUCTURAL AUTHOR 3 GENOMICS CONSORTIUM (SGC) REVDAT 7 10-JAN-24 4WSQ 1 REMARK LINK REVDAT 6 24-JAN-18 4WSQ 1 AUTHOR REVDAT 5 09-MAR-16 4WSQ 1 JRNL REVDAT 4 02-MAR-16 4WSQ 1 JRNL REVDAT 3 02-SEP-15 4WSQ 1 REVDAT 2 17-DEC-14 4WSQ 1 REVDAT 1 05-NOV-14 4WSQ 0 JRNL AUTH F.J.SORRELL,M.SZKLARZ,K.R.ABDUL AZEEZ,J.M.ELKINS,S.KNAPP JRNL TITL FAMILY-WIDE STRUCTURAL ANALYSIS OF HUMAN NUMB-ASSOCIATED JRNL TITL 2 PROTEIN KINASES. JRNL REF STRUCTURE V. 24 401 2016 JRNL REFN ISSN 0969-2126 JRNL PMID 26853940 JRNL DOI 10.1016/J.STR.2015.12.015 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.33 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 66437 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.850 REMARK 3 FREE R VALUE TEST SET COUNT : 3225 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 56.3486 - 5.5439 0.99 2981 135 0.1648 0.1756 REMARK 3 2 5.5439 - 4.4009 1.00 2854 125 0.1450 0.1589 REMARK 3 3 4.4009 - 3.8447 1.00 2775 162 0.1515 0.1616 REMARK 3 4 3.8447 - 3.4933 1.00 2784 145 0.1608 0.1951 REMARK 3 5 3.4933 - 3.2429 1.00 2780 118 0.1874 0.1981 REMARK 3 6 3.2429 - 3.0517 1.00 2824 102 0.1860 0.1870 REMARK 3 7 3.0517 - 2.8989 1.00 2748 143 0.1815 0.1969 REMARK 3 8 2.8989 - 2.7727 1.00 2722 165 0.1840 0.2255 REMARK 3 9 2.7727 - 2.6660 1.00 2727 134 0.1808 0.2334 REMARK 3 10 2.6660 - 2.5740 1.00 2768 145 0.1770 0.2256 REMARK 3 11 2.5740 - 2.4935 1.00 2740 135 0.1750 0.2291 REMARK 3 12 2.4935 - 2.4222 1.00 2716 139 0.1818 0.2119 REMARK 3 13 2.4222 - 2.3585 1.00 2703 149 0.1864 0.2232 REMARK 3 14 2.3585 - 2.3009 1.00 2694 158 0.1906 0.2436 REMARK 3 15 2.3009 - 2.2486 1.00 2729 145 0.1879 0.2373 REMARK 3 16 2.2486 - 2.2008 1.00 2688 148 0.2041 0.2592 REMARK 3 17 2.2008 - 2.1567 1.00 2722 135 0.2261 0.2630 REMARK 3 18 2.1567 - 2.1160 1.00 2730 135 0.2317 0.2906 REMARK 3 19 2.1160 - 2.0782 1.00 2708 132 0.2403 0.3064 REMARK 3 20 2.0782 - 2.0430 1.00 2697 156 0.2539 0.2742 REMARK 3 21 2.0430 - 2.0100 1.00 2730 135 0.2817 0.2838 REMARK 3 22 2.0100 - 1.9791 1.00 2661 159 0.2960 0.3328 REMARK 3 23 1.9791 - 1.9500 1.00 2731 125 0.3039 0.3523 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.960 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 5101 REMARK 3 ANGLE : 1.273 6967 REMARK 3 CHIRALITY : 0.063 785 REMARK 3 PLANARITY : 0.007 896 REMARK 3 DIHEDRAL : 12.840 1829 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESSEQ 29:345) REMARK 3 ORIGIN FOR THE GROUP (A): 3.0307 -14.7644 -41.5051 REMARK 3 T TENSOR REMARK 3 T11: 0.3444 T22: 0.1873 REMARK 3 T33: 0.2484 T12: 0.0304 REMARK 3 T13: -0.0030 T23: -0.0196 REMARK 3 L TENSOR REMARK 3 L11: 0.8704 L22: 2.2357 REMARK 3 L33: 1.7816 L12: 0.4837 REMARK 3 L13: -0.0840 L23: -0.6764 REMARK 3 S TENSOR REMARK 3 S11: -0.0530 S12: 0.0319 S13: -0.0481 REMARK 3 S21: -0.0731 S22: 0.0063 S23: -0.0249 REMARK 3 S31: 0.0185 S32: 0.0438 S33: 0.0384 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN B AND RESSEQ 33:342) REMARK 3 ORIGIN FOR THE GROUP (A): -3.4734 -11.9255 -92.2910 REMARK 3 T TENSOR REMARK 3 T11: 0.4099 T22: 0.3038 REMARK 3 T33: 0.2720 T12: -0.0146 REMARK 3 T13: 0.0151 T23: 0.0375 REMARK 3 L TENSOR REMARK 3 L11: 1.1956 L22: 2.0424 REMARK 3 L33: 1.7085 L12: -0.2514 REMARK 3 L13: 0.7518 L23: -0.3277 REMARK 3 S TENSOR REMARK 3 S11: -0.1212 S12: 0.1614 S13: 0.1573 REMARK 3 S21: -0.2306 S22: -0.0452 S23: -0.1099 REMARK 3 S31: 0.0308 S32: 0.0650 S33: 0.1474 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN B REMARK 3 ATOM PAIRS NUMBER : 2775 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4WSQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1000204391. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-FEB-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.2.17 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 66564 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 56.330 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.09800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 1.09400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2BUJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.005M ZINC ACETATE, 20% PEG3350, PH REMARK 280 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.33000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 91.82000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.66000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 91.82000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.33000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.66000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: UNIT 1 REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 29 REMARK 465 LEU B 30 REMARK 465 GLY B 31 REMARK 465 SER B 32 REMARK 465 ALA B 343 REMARK 465 ALA B 344 REMARK 465 LYS B 345 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 54 CG CD OE1 OE2 REMARK 470 PHE A 57 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASN A 67 CG OD1 ND2 REMARK 470 GLU A 81 CD OE1 OE2 REMARK 470 SER A 116 OG REMARK 470 ASP A 118 CG OD1 OD2 REMARK 470 ARG A 130 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 143 CG CD OE1 NE2 REMARK 470 LYS A 169 CG CD CE NZ REMARK 470 ARG A 187 NE CZ NH1 NH2 REMARK 470 LYS A 201 CD CE NZ REMARK 470 GLN A 284 CD OE1 NE2 REMARK 470 LYS A 300 CE NZ REMARK 470 LYS A 316 CD CE NZ REMARK 470 LYS A 317 CE NZ REMARK 470 LYS A 332 CD CE NZ REMARK 470 LYS A 345 CD CE NZ REMARK 470 GLU B 54 CG CD OE1 OE2 REMARK 470 LYS B 70 CE NZ REMARK 470 ARG B 89 CG CD NE CZ NH1 NH2 REMARK 470 VAL B 114 CG1 CG2 REMARK 470 SER B 115 OG REMARK 470 SER B 116 OG REMARK 470 ASP B 118 CG OD1 OD2 REMARK 470 GLN B 153 CG CD OE1 NE2 REMARK 470 LYS B 169 CG CD CE NZ REMARK 470 ARG B 187 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 201 CD CE NZ REMARK 470 LYS B 218 CE NZ REMARK 470 ARG B 281 NE CZ NH1 NH2 REMARK 470 LYS B 300 CE NZ REMARK 470 LYS B 313 CE NZ REMARK 470 LYS B 316 CD CE NZ REMARK 470 LYS B 317 CD CE NZ REMARK 470 GLU B 318 CG CD OE1 OE2 REMARK 470 ASN B 326 CG OD1 ND2 REMARK 470 LYS B 332 CD CE NZ REMARK 470 GLU B 341 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 531 O HOH A 536 1.84 REMARK 500 O SER B 98 O HOH B 602 1.94 REMARK 500 O GLY A 68 O HOH A 501 1.96 REMARK 500 O HOH B 503 O HOH B 525 2.03 REMARK 500 O SER B 98 O HOH B 602 2.05 REMARK 500 NH1 ARG A 291 O HOH A 598 2.06 REMARK 500 O SER A 98 O HOH A 502 2.10 REMARK 500 O HOH A 573 O HOH A 597 2.15 REMARK 500 N GLY A 99 O HOH A 589 2.15 REMARK 500 OE2 GLU A 335 O HOH A 619 2.16 REMARK 500 NE2 GLN A 325 O HOH A 648 2.17 REMARK 500 OE1 GLU B 295 O HOH B 631 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 186 CB - CG - OD1 ANGL. DEV. = 7.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 115 -2.62 -145.51 REMARK 500 ASP A 176 44.44 -144.51 REMARK 500 ASP A 194 90.76 69.61 REMARK 500 THR A 240 -166.10 -127.20 REMARK 500 SER B 115 -3.19 -144.57 REMARK 500 ASP B 176 44.83 -142.77 REMARK 500 ASP B 194 91.87 72.01 REMARK 500 THR B 240 -164.98 -129.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 624 DISTANCE = 6.09 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 127 OD1 REMARK 620 2 ASP A 127 OD2 53.5 REMARK 620 3 HIS A 185 NE2 164.2 114.3 REMARK 620 4 GLU A 214 OE1 72.1 26.8 93.1 REMARK 620 5 GLU A 214 OE2 72.0 28.7 92.9 2.9 REMARK 620 6 HOH A 511 O 79.4 116.3 100.8 107.5 104.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 176 OD2 REMARK 620 2 ASP A 194 OD2 106.7 REMARK 620 3 HOH A 571 O 171.0 75.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 185 ND1 REMARK 620 2 ASP A 186 OD1 106.4 REMARK 620 3 HIS A 189 ND1 108.7 112.1 REMARK 620 4 ASP A 215 OD2 57.9 111.6 52.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 127 OD1 REMARK 620 2 ASP B 127 OD2 58.8 REMARK 620 3 HIS B 185 NE2 158.9 103.0 REMARK 620 4 GLU B 214 OE1 62.2 22.3 96.9 REMARK 620 5 GLU B 214 OE2 62.1 25.1 96.9 2.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 176 OD2 REMARK 620 2 ASP B 194 OD2 107.5 REMARK 620 3 HOH B 571 O 168.9 70.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 185 ND1 REMARK 620 2 ASP B 186 OD1 99.2 REMARK 620 3 HIS B 189 ND1 108.4 100.9 REMARK 620 4 ASP B 215 OD2 55.4 103.9 53.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue KSA A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue KSA B 404 DBREF 4WSQ A 29 345 UNP Q2M2I8 AAK1_HUMAN 29 345 DBREF 4WSQ B 29 345 UNP Q2M2I8 AAK1_HUMAN 29 345 SEQRES 1 A 317 GLY LEU GLY SER GLY TYR ILE GLY ARG VAL PHE GLY ILE SEQRES 2 A 317 GLY ARG GLN GLN VAL THR VAL ASP GLU VAL LEU ALA GLU SEQRES 3 A 317 GLY GLY PHE ALA ILE VAL PHE LEU VAL ARG THR SER ASN SEQRES 4 A 317 GLY MET LYS CYS ALA LEU LYS ARG MET PHE VAL ASN ASN SEQRES 5 A 317 GLU HIS ASP LEU GLN VAL CYS LYS ARG GLU ILE GLN ILE SEQRES 6 A 317 MET ARG ASP LEU SER GLY HIS LYS ASN ILE VAL GLY TYR SEQRES 7 A 317 ILE ASP SER SER ILE ASN ASN VAL SER SER GLY ASP VAL SEQRES 8 A 317 TRP GLU VAL LEU ILE LEU MET ASP PHE CYS ARG GLY GLY SEQRES 9 A 317 GLN VAL VAL ASN LEU MET ASN GLN ARG LEU GLN THR GLY SEQRES 10 A 317 PHE THR GLU ASN GLU VAL LEU GLN ILE PHE CYS ASP THR SEQRES 11 A 317 CYS GLU ALA VAL ALA ARG LEU HIS GLN CYS LYS THR PRO SEQRES 12 A 317 ILE ILE HIS ARG ASP LEU LYS VAL GLU ASN ILE LEU LEU SEQRES 13 A 317 HIS ASP ARG GLY HIS TYR VAL LEU CYS ASP PHE GLY SER SEQRES 14 A 317 ALA THR ASN LYS PHE GLN ASN PRO GLN THR GLU GLY VAL SEQRES 15 A 317 ASN ALA VAL GLU ASP GLU ILE LYS LYS TYR THR THR LEU SEQRES 16 A 317 SER TYR ARG ALA PRO GLU MET VAL ASN LEU TYR SER GLY SEQRES 17 A 317 LYS ILE ILE THR THR LYS ALA ASP ILE TRP ALA LEU GLY SEQRES 18 A 317 CYS LEU LEU TYR LYS LEU CYS TYR PHE THR LEU PRO PHE SEQRES 19 A 317 GLY GLU SER GLN VAL ALA ILE CYS ASP GLY ASN PHE THR SEQRES 20 A 317 ILE PRO ASP ASN SER ARG TYR SER GLN ASP MET HIS CYS SEQRES 21 A 317 LEU ILE ARG TYR MET LEU GLU PRO ASP PRO ASP LYS ARG SEQRES 22 A 317 PRO ASP ILE TYR GLN VAL SER TYR PHE SER PHE LYS LEU SEQRES 23 A 317 LEU LYS LYS GLU CYS PRO ILE PRO ASN VAL GLN ASN SER SEQRES 24 A 317 PRO ILE PRO ALA LYS LEU PRO GLU PRO VAL LYS ALA SER SEQRES 25 A 317 GLU ALA ALA ALA LYS SEQRES 1 B 317 GLY LEU GLY SER GLY TYR ILE GLY ARG VAL PHE GLY ILE SEQRES 2 B 317 GLY ARG GLN GLN VAL THR VAL ASP GLU VAL LEU ALA GLU SEQRES 3 B 317 GLY GLY PHE ALA ILE VAL PHE LEU VAL ARG THR SER ASN SEQRES 4 B 317 GLY MET LYS CYS ALA LEU LYS ARG MET PHE VAL ASN ASN SEQRES 5 B 317 GLU HIS ASP LEU GLN VAL CYS LYS ARG GLU ILE GLN ILE SEQRES 6 B 317 MET ARG ASP LEU SER GLY HIS LYS ASN ILE VAL GLY TYR SEQRES 7 B 317 ILE ASP SER SER ILE ASN ASN VAL SER SER GLY ASP VAL SEQRES 8 B 317 TRP GLU VAL LEU ILE LEU MET ASP PHE CYS ARG GLY GLY SEQRES 9 B 317 GLN VAL VAL ASN LEU MET ASN GLN ARG LEU GLN THR GLY SEQRES 10 B 317 PHE THR GLU ASN GLU VAL LEU GLN ILE PHE CYS ASP THR SEQRES 11 B 317 CYS GLU ALA VAL ALA ARG LEU HIS GLN CYS LYS THR PRO SEQRES 12 B 317 ILE ILE HIS ARG ASP LEU LYS VAL GLU ASN ILE LEU LEU SEQRES 13 B 317 HIS ASP ARG GLY HIS TYR VAL LEU CYS ASP PHE GLY SER SEQRES 14 B 317 ALA THR ASN LYS PHE GLN ASN PRO GLN THR GLU GLY VAL SEQRES 15 B 317 ASN ALA VAL GLU ASP GLU ILE LYS LYS TYR THR THR LEU SEQRES 16 B 317 SER TYR ARG ALA PRO GLU MET VAL ASN LEU TYR SER GLY SEQRES 17 B 317 LYS ILE ILE THR THR LYS ALA ASP ILE TRP ALA LEU GLY SEQRES 18 B 317 CYS LEU LEU TYR LYS LEU CYS TYR PHE THR LEU PRO PHE SEQRES 19 B 317 GLY GLU SER GLN VAL ALA ILE CYS ASP GLY ASN PHE THR SEQRES 20 B 317 ILE PRO ASP ASN SER ARG TYR SER GLN ASP MET HIS CYS SEQRES 21 B 317 LEU ILE ARG TYR MET LEU GLU PRO ASP PRO ASP LYS ARG SEQRES 22 B 317 PRO ASP ILE TYR GLN VAL SER TYR PHE SER PHE LYS LEU SEQRES 23 B 317 LEU LYS LYS GLU CYS PRO ILE PRO ASN VAL GLN ASN SER SEQRES 24 B 317 PRO ILE PRO ALA LYS LEU PRO GLU PRO VAL LYS ALA SER SEQRES 25 B 317 GLU ALA ALA ALA LYS HET ZN A 401 1 HET ZN A 402 1 HET ZN A 403 1 HET EDO A 404 4 HET KSA A 405 35 HET ZN B 401 1 HET ZN B 402 1 HET ZN B 403 1 HET KSA B 404 35 HETNAM ZN ZINC ION HETNAM EDO 1,2-ETHANEDIOL HETNAM KSA K-252A HETSYN EDO ETHYLENE GLYCOL FORMUL 3 ZN 6(ZN 2+) FORMUL 6 EDO C2 H6 O2 FORMUL 7 KSA 2(C27 H21 N3 O5) FORMUL 12 HOH *285(H2 O) HELIX 1 AA1 GLY A 29 ILE A 35 1 7 HELIX 2 AA2 ASN A 80 SER A 98 1 19 HELIX 3 AA3 GLN A 133 GLN A 140 1 8 HELIX 4 AA4 THR A 147 GLN A 167 1 21 HELIX 5 AA5 LYS A 178 GLU A 180 5 3 HELIX 6 AA6 ASN A 204 GLY A 209 1 6 HELIX 7 AA7 GLY A 209 THR A 221 1 13 HELIX 8 AA8 THR A 222 ARG A 226 5 5 HELIX 9 AA9 ALA A 227 ASN A 232 1 6 HELIX 10 AB1 THR A 241 PHE A 258 1 18 HELIX 11 AB2 SER A 265 GLY A 272 1 8 HELIX 12 AB3 SER A 283 LEU A 294 1 12 HELIX 13 AB4 ASP A 303 LEU A 315 1 13 HELIX 14 AB5 LYS A 338 LYS A 345 1 8 HELIX 15 AB6 ILE B 41 GLN B 45 5 5 HELIX 16 AB7 ASN B 80 SER B 98 1 19 HELIX 17 AB8 GLN B 133 GLN B 140 1 8 HELIX 18 AB9 THR B 147 GLN B 167 1 21 HELIX 19 AC1 LYS B 178 GLU B 180 5 3 HELIX 20 AC2 ASN B 204 GLY B 209 1 6 HELIX 21 AC3 GLY B 209 THR B 221 1 13 HELIX 22 AC4 THR B 222 ARG B 226 5 5 HELIX 23 AC5 ALA B 227 ASN B 232 1 6 HELIX 24 AC6 THR B 241 PHE B 258 1 18 HELIX 25 AC7 SER B 265 GLY B 272 1 8 HELIX 26 AC8 SER B 283 LEU B 294 1 12 HELIX 27 AC9 ASP B 303 LEU B 315 1 13 SHEET 1 AA1 6 VAL A 38 ILE A 41 0 SHEET 2 AA1 6 GLN A 44 ALA A 53 -1 O GLN A 44 N ILE A 41 SHEET 3 AA1 6 ILE A 59 THR A 65 -1 O LEU A 62 N ASP A 49 SHEET 4 AA1 6 LYS A 70 VAL A 78 -1 O LEU A 73 N PHE A 61 SHEET 5 AA1 6 TRP A 120 ASP A 127 -1 O VAL A 122 N MET A 76 SHEET 6 AA1 6 TYR A 106 ASN A 113 -1 N ASN A 112 O GLU A 121 SHEET 1 AA2 2 ILE A 182 ASP A 186 0 SHEET 2 AA2 2 HIS A 189 LEU A 192 -1 O HIS A 189 N ASP A 186 SHEET 1 AA3 6 VAL B 38 PHE B 39 0 SHEET 2 AA3 6 VAL B 46 ALA B 53 -1 O VAL B 46 N PHE B 39 SHEET 3 AA3 6 ILE B 59 ARG B 64 -1 O LEU B 62 N ASP B 49 SHEET 4 AA3 6 LYS B 70 VAL B 78 -1 O LEU B 73 N PHE B 61 SHEET 5 AA3 6 TRP B 120 MET B 126 -1 O VAL B 122 N MET B 76 SHEET 6 AA3 6 TYR B 106 ASN B 113 -1 N ASN B 112 O GLU B 121 SHEET 1 AA4 2 ILE B 182 ASP B 186 0 SHEET 2 AA4 2 HIS B 189 LEU B 192 -1 O VAL B 191 N LEU B 183 LINK OD1 ASP A 127 ZN ZN A 402 1555 1555 2.64 LINK OD2 ASP A 127 ZN ZN A 402 1555 1555 2.09 LINK OD2 ASP A 176 ZN ZN A 403 1555 1555 2.19 LINK ND1 HIS A 185 ZN ZN A 401 1555 1555 2.05 LINK NE2 HIS A 185 ZN ZN A 402 1555 1555 2.10 LINK OD1 ASP A 186 ZN ZN A 401 1555 1555 2.01 LINK ND1 HIS A 189 ZN ZN A 401 1555 1555 2.04 LINK OD2 ASP A 194 ZN ZN A 403 1555 1555 2.32 LINK OE1 GLU A 214 ZN ZN A 402 1555 3544 2.15 LINK OE2 GLU A 214 ZN ZN A 402 1555 3544 2.56 LINK OD2 ASP A 215 ZN ZN A 401 1555 3544 2.24 LINK ZN ZN A 402 O HOH A 511 1555 1555 2.08 LINK ZN ZN A 403 O HOH A 571 1555 1555 2.11 LINK OD1 ASP B 127 ZN ZN B 402 1555 4544 2.24 LINK OD2 ASP B 127 ZN ZN B 402 1555 4544 2.28 LINK OD2 ASP B 176 ZN ZN B 403 1555 1555 2.19 LINK ND1 HIS B 185 ZN ZN B 401 1555 4544 2.10 LINK NE2 HIS B 185 ZN ZN B 402 1555 4544 2.29 LINK OD1 ASP B 186 ZN ZN B 401 1555 4544 2.20 LINK ND1 HIS B 189 ZN ZN B 401 1555 4544 2.11 LINK OD2 ASP B 194 ZN ZN B 403 1555 1555 2.23 LINK OE1 GLU B 214 ZN ZN B 402 1555 1555 2.18 LINK OE2 GLU B 214 ZN ZN B 402 1555 1555 1.87 LINK OD2 ASP B 215 ZN ZN B 401 1555 1555 1.97 LINK ZN ZN B 403 O HOH B 571 1555 1555 2.26 CISPEP 1 GLY A 55 GLY A 56 0 -8.79 SITE 1 AC1 4 HIS A 185 ASP A 186 HIS A 189 ASP A 215 SITE 1 AC2 4 ASP A 127 HIS A 185 GLU A 214 HOH A 511 SITE 1 AC3 3 ASP A 176 ASP A 194 HOH A 571 SITE 1 AC4 7 TYR A 309 LYS A 313 LYS A 317 GLU A 318 SITE 2 AC4 7 CYS A 319 ILE B 35 GLY B 36 SITE 1 AC5 14 ALA A 53 ALA A 72 LYS A 74 ASP A 127 SITE 2 AC5 14 PHE A 128 CYS A 129 GLY A 132 GLN A 133 SITE 3 AC5 14 GLU A 180 ASN A 181 LEU A 183 CYS A 193 SITE 4 AC5 14 ASP A 194 HOH A 557 SITE 1 AC6 4 HIS B 185 ASP B 186 HIS B 189 ASP B 215 SITE 1 AC7 3 ASP B 127 HIS B 185 GLU B 214 SITE 1 AC8 3 ASP B 176 ASP B 194 HOH B 571 SITE 1 AC9 13 ALA B 53 ALA B 72 LYS B 74 ASP B 127 SITE 2 AC9 13 PHE B 128 CYS B 129 GLN B 133 GLU B 180 SITE 3 AC9 13 ASN B 181 LEU B 183 CYS B 193 ASP B 194 SITE 4 AC9 13 HOH B 555 CRYST1 68.660 71.320 183.640 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014565 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014021 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005445 0.00000