PDB Short entry for 4WVL HEADER TRANSFERASE/TRANSFERASE INHIBITOR 06-NOV-14 4WVL TITLE STRUCTURE-GUIDED DOT1L PROBE OPTIMIZATION BY LABEL-FREE LIGAND TITLE 2 DISPLACEMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-79 SPECIFIC; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DOT1-LIKE PROTEIN,HISTONE H3-K79 METHYLTRANSFERASE,H3-K79- COMPND 5 HMTASE,LYSINE N-METHYLTRANSFERASE 4; COMPND 6 EC: 2.1.1.43; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DOT1L, KIAA1814, KMT4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DOT1L, METHYLTRANSFERASE, INHIBITOR, LEUKEMIA, TRANSFERASE- KEYWDS 2 TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR X.XU,S.DHE-PAGANON,S.BLACKLOW REVDAT 5 27-SEP-23 4WVL 1 REMARK REVDAT 4 26-AUG-15 4WVL 1 REMARK REVDAT 3 01-APR-15 4WVL 1 JRNL REVDAT 2 28-JAN-15 4WVL 1 JRNL REVDAT 1 03-DEC-14 4WVL 0 JRNL AUTH J.S.YI,A.J.FEDERATION,J.QI,S.DHE-PAGANON,M.HADLER,X.XU, JRNL AUTH 2 R.ST PIERRE,A.C.VARCA,L.WU,J.J.MARINEAU,W.B.SMITH,A.SOUZA, JRNL AUTH 3 E.J.CHORY,S.A.ARMSTRONG,J.E.BRADNER JRNL TITL STRUCTURE-GUIDED DOT1L PROBE OPTIMIZATION BY LABEL-FREE JRNL TITL 2 LIGAND DISPLACEMENT. JRNL REF ACS CHEM.BIOL. V. 10 667 2015 JRNL REFN ESSN 1554-8937 JRNL PMID 25397901 JRNL DOI 10.1021/CB500796D REMARK 2 REMARK 2 RESOLUTION. 2.41 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.41 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.62 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 27344 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1371 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.6271 - 5.1806 1.00 2697 141 0.1595 0.1888 REMARK 3 2 5.1806 - 4.1130 1.00 2594 145 0.1361 0.1470 REMARK 3 3 4.1130 - 3.5933 1.00 2603 150 0.1527 0.1891 REMARK 3 4 3.5933 - 3.2649 1.00 2602 141 0.1712 0.1968 REMARK 3 5 3.2649 - 3.0310 1.00 2576 138 0.1916 0.2533 REMARK 3 6 3.0310 - 2.8523 1.00 2591 116 0.1963 0.2087 REMARK 3 7 2.8523 - 2.7095 1.00 2605 128 0.2008 0.2528 REMARK 3 8 2.7095 - 2.5916 1.00 2578 132 0.1943 0.2261 REMARK 3 9 2.5916 - 2.4918 1.00 2566 134 0.1965 0.2399 REMARK 3 10 2.4918 - 2.4058 1.00 2561 146 0.2044 0.2683 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.430 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 2769 REMARK 3 ANGLE : 0.824 3751 REMARK 3 CHIRALITY : 0.033 407 REMARK 3 PLANARITY : 0.003 475 REMARK 3 DIHEDRAL : 13.381 1017 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): 69.0888 -19.5020 0.9176 REMARK 3 T TENSOR REMARK 3 T11: 0.4905 T22: 0.2902 REMARK 3 T33: 0.5162 T12: -0.0141 REMARK 3 T13: 0.0787 T23: 0.0032 REMARK 3 L TENSOR REMARK 3 L11: 2.3345 L22: 2.8758 REMARK 3 L33: 4.0575 L12: 1.1745 REMARK 3 L13: -1.7673 L23: -1.7312 REMARK 3 S TENSOR REMARK 3 S11: -0.0569 S12: -0.1206 S13: -0.5350 REMARK 3 S21: -0.1647 S22: -0.2661 S23: -0.4231 REMARK 3 S31: 0.3392 S32: 0.3259 S33: 0.2163 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 91 THROUGH 225 ) REMARK 3 ORIGIN FOR THE GROUP (A): 60.9656 2.1158 -1.6104 REMARK 3 T TENSOR REMARK 3 T11: 0.4313 T22: 0.2592 REMARK 3 T33: 0.2792 T12: -0.0128 REMARK 3 T13: 0.0343 T23: -0.0445 REMARK 3 L TENSOR REMARK 3 L11: 1.7705 L22: 6.6621 REMARK 3 L33: 0.7498 L12: -0.1098 REMARK 3 L13: 0.4671 L23: -0.7174 REMARK 3 S TENSOR REMARK 3 S11: -0.0686 S12: 0.1408 S13: -0.1621 REMARK 3 S21: -0.2728 S22: 0.0212 S23: 0.1105 REMARK 3 S31: 0.1209 S32: -0.0631 S33: 0.0405 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 226 THROUGH 347 ) REMARK 3 ORIGIN FOR THE GROUP (A): 63.5977 29.7079 3.2794 REMARK 3 T TENSOR REMARK 3 T11: 0.3656 T22: 0.2198 REMARK 3 T33: 0.3153 T12: 0.0470 REMARK 3 T13: 0.0014 T23: 0.0460 REMARK 3 L TENSOR REMARK 3 L11: 0.7152 L22: 4.5557 REMARK 3 L33: 1.7360 L12: -0.7774 REMARK 3 L13: -0.4205 L23: 2.0337 REMARK 3 S TENSOR REMARK 3 S11: -0.0331 S12: -0.0434 S13: 0.1213 REMARK 3 S21: -0.1216 S22: 0.1229 S23: -0.0271 REMARK 3 S31: -0.1222 S32: 0.0175 S33: -0.0552 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4WVL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-NOV-14. REMARK 100 THE DEPOSITION ID IS D_1000204577. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27365 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 26.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.60 REMARK 200 R MERGE FOR SHELL (I) : 0.57200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1NW3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: A 5-FOLD EXCESS OF 50 MM 5 REMARK 280 -IODOTUBERCIDIN (IN DMSO) WAS MIXED WITH PROTEIN AND REMARK 280 CRYSTALLIZED BY USING THE HANGING-DROP VAPOR DIFFUSION METHOD AT REMARK 280 20 DEGREE IN CONDITIONS CONTAINING 1.8 M (NH4)2SO4, 0.1 M NAAC- REMARK 280 PH4.9. CRYSTALS WERE TRANSFERRED INTO STABILIZATION BUFFER (2.5 REMARK 280 M (NH4)2SO4, 0.1 M NAAC-PH4.9, 0.5 M NACL), INCUBATED WITH 100 REMARK 280 UM INHIBITOR., VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 35.59133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 17.79567 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 26.69350 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 8.89783 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 44.48917 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 GLU A 3 REMARK 465 ASN A 57 REMARK 465 TYR A 58 REMARK 465 VAL A 59 REMARK 465 LEU A 60 REMARK 465 ILE A 61 REMARK 465 GLU A 129 REMARK 465 PRO A 130 REMARK 465 PHE A 131 REMARK 465 SER A 132 REMARK 465 PRO A 133 REMARK 465 GLU A 134 REMARK 465 VAL A 135 REMARK 465 TYR A 136 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 4 CG CD CE NZ REMARK 470 GLU A 16 CG CD OE1 OE2 REMARK 470 GLU A 69 CD OE1 OE2 REMARK 470 GLN A 94 CG CD OE1 NE2 REMARK 470 TYR A 128 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 138 CG CD OE1 OE2 REMARK 470 LYS A 152 CE NZ REMARK 470 ASP A 189 CG OD1 OD2 REMARK 470 LYS A 193 CD CE NZ REMARK 470 LYS A 212 CD CE NZ REMARK 470 GLU A 230 CG CD OE1 OE2 REMARK 470 ARG A 278 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 282 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 286 CG OD1 OD2 REMARK 470 LYS A 300 CG CD CE NZ REMARK 470 LYS A 308 CE NZ REMARK 470 GLU A 337 CG CD OE1 OE2 REMARK 470 ARG A 344 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 347 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 339 O HOH A 501 1.98 REMARK 500 O LEU A 296 O HOH A 550 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP A 250 O HOH A 501 2654 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 63 -88.65 -123.76 REMARK 500 LYS A 97 -82.17 -8.24 REMARK 500 LEU A 98 -12.64 75.53 REMARK 500 PRO A 122 0.80 -69.34 REMARK 500 ASN A 127 -139.85 -121.94 REMARK 500 THR A 139 32.31 -83.38 REMARK 500 SER A 302 -77.50 -119.49 REMARK 500 VAL A 303 137.11 67.02 REMARK 500 SER A 304 -168.65 -111.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 3US A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 408 DBREF 4WVL A 1 347 UNP Q8TEK3 DOT1L_HUMAN 1 347 SEQRES 1 A 347 MET GLY GLU LYS LEU GLU LEU ARG LEU LYS SER PRO VAL SEQRES 2 A 347 GLY ALA GLU PRO ALA VAL TYR PRO TRP PRO LEU PRO VAL SEQRES 3 A 347 TYR ASP LYS HIS HIS ASP ALA ALA HIS GLU ILE ILE GLU SEQRES 4 A 347 THR ILE ARG TRP VAL CYS GLU GLU ILE PRO ASP LEU LYS SEQRES 5 A 347 LEU ALA MET GLU ASN TYR VAL LEU ILE ASP TYR ASP THR SEQRES 6 A 347 LYS SER PHE GLU SER MET GLN ARG LEU CYS ASP LYS TYR SEQRES 7 A 347 ASN ARG ALA ILE ASP SER ILE HIS GLN LEU TRP LYS GLY SEQRES 8 A 347 THR THR GLN PRO MET LYS LEU ASN THR ARG PRO SER THR SEQRES 9 A 347 GLY LEU LEU ARG HIS ILE LEU GLN GLN VAL TYR ASN HIS SEQRES 10 A 347 SER VAL THR ASP PRO GLU LYS LEU ASN ASN TYR GLU PRO SEQRES 11 A 347 PHE SER PRO GLU VAL TYR GLY GLU THR SER PHE ASP LEU SEQRES 12 A 347 VAL ALA GLN MET ILE ASP GLU ILE LYS MET THR ASP ASP SEQRES 13 A 347 ASP LEU PHE VAL ASP LEU GLY SER GLY VAL GLY GLN VAL SEQRES 14 A 347 VAL LEU GLN VAL ALA ALA ALA THR ASN CYS LYS HIS HIS SEQRES 15 A 347 TYR GLY VAL GLU LYS ALA ASP ILE PRO ALA LYS TYR ALA SEQRES 16 A 347 GLU THR MET ASP ARG GLU PHE ARG LYS TRP MET LYS TRP SEQRES 17 A 347 TYR GLY LYS LYS HIS ALA GLU TYR THR LEU GLU ARG GLY SEQRES 18 A 347 ASP PHE LEU SER GLU GLU TRP ARG GLU ARG ILE ALA ASN SEQRES 19 A 347 THR SER VAL ILE PHE VAL ASN ASN PHE ALA PHE GLY PRO SEQRES 20 A 347 GLU VAL ASP HIS GLN LEU LYS GLU ARG PHE ALA ASN MET SEQRES 21 A 347 LYS GLU GLY GLY ARG ILE VAL SER SER LYS PRO PHE ALA SEQRES 22 A 347 PRO LEU ASN PHE ARG ILE ASN SER ARG ASN LEU SER ASP SEQRES 23 A 347 ILE GLY THR ILE MET ARG VAL VAL GLU LEU SER PRO LEU SEQRES 24 A 347 LYS GLY SER VAL SER TRP THR GLY LYS PRO VAL SER TYR SEQRES 25 A 347 TYR LEU HIS THR ILE ASP ARG THR ILE LEU GLU ASN TYR SEQRES 26 A 347 PHE SER SER LEU LYS ASN PRO LYS LEU ARG GLU GLU GLN SEQRES 27 A 347 GLU ALA ALA ARG ARG ARG GLN GLN ARG HET 3US A 401 47 HET SO4 A 402 5 HET SO4 A 403 5 HET SO4 A 404 5 HET GOL A 405 6 HET EDO A 406 4 HET EDO A 407 4 HET EDO A 408 4 HETNAM 3US N-[4-(ACETYLAMINO)BUTYL]-5'-[(3-{[(4-TERT-BUTYLPHENYL) HETNAM 2 3US CARBAMOYL]AMINO}PROPYL)(PROPAN-2-YL)AMINO]-5'- HETNAM 3 3US DEOXYADENOSINE HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM EDO 1,2-ETHANEDIOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 3US C33 H51 N9 O5 FORMUL 3 SO4 3(O4 S 2-) FORMUL 6 GOL C3 H8 O3 FORMUL 7 EDO 3(C2 H6 O2) FORMUL 10 HOH *72(H2 O) HELIX 1 AA1 ALA A 33 ILE A 48 1 16 HELIX 2 AA2 ILE A 48 GLU A 56 1 9 HELIX 3 AA3 SER A 67 GLY A 91 1 25 HELIX 4 AA4 SER A 103 VAL A 119 1 17 HELIX 5 AA5 SER A 140 ILE A 151 1 12 HELIX 6 AA6 GLY A 167 THR A 177 1 11 HELIX 7 AA7 ALA A 188 GLY A 210 1 23 HELIX 8 AA8 SER A 225 ASN A 234 1 10 HELIX 9 AA9 GLY A 246 ALA A 258 1 13 HELIX 10 AB1 ASP A 286 THR A 289 5 4 HELIX 11 AB2 ARG A 319 ASN A 331 1 13 HELIX 12 AB3 ASN A 331 GLN A 346 1 16 SHEET 1 AA1 2 GLU A 6 LEU A 9 0 SHEET 2 AA1 2 ALA A 18 PRO A 21 -1 O TYR A 20 N LEU A 7 SHEET 1 AA2 2 VAL A 26 ASP A 28 0 SHEET 2 AA2 2 HIS A 31 ASP A 32 -1 O HIS A 31 N TYR A 27 SHEET 1 AA3 7 TYR A 216 ARG A 220 0 SHEET 2 AA3 7 HIS A 181 GLU A 186 1 N GLY A 184 O GLU A 219 SHEET 3 AA3 7 LEU A 158 LEU A 162 1 N PHE A 159 O TYR A 183 SHEET 4 AA3 7 VAL A 237 VAL A 240 1 O PHE A 239 N VAL A 160 SHEET 5 AA3 7 ARG A 265 SER A 268 1 O VAL A 267 N ILE A 238 SHEET 6 AA3 7 TYR A 312 ILE A 317 -1 O HIS A 315 N ILE A 266 SHEET 7 AA3 7 MET A 291 LEU A 296 -1 N VAL A 294 O LEU A 314 CISPEP 1 TRP A 22 PRO A 23 0 1.01 SITE 1 AC1 14 ASP A 161 LEU A 162 GLY A 163 SER A 164 SITE 2 AC1 14 GLY A 165 VAL A 169 GLU A 186 LYS A 187 SITE 3 AC1 14 GLY A 221 ASP A 222 PHE A 223 ASN A 241 SITE 4 AC1 14 PHE A 245 HOH A 529 SITE 1 AC2 4 ARG A 203 LYS A 207 HIS A 213 HOH A 567 SITE 1 AC3 2 HIS A 117 GLU A 201 SITE 1 AC4 3 HIS A 251 LYS A 254 ARG A 343 SITE 1 AC5 4 VAL A 160 TYR A 183 ARG A 231 THR A 235 SITE 1 AC6 4 GLU A 46 LYS A 97 SER A 103 LYS A 211 SITE 1 AC7 3 ASN A 99 THR A 100 ARG A 101 SITE 1 AC8 2 ARG A 292 VAL A 294 CRYST1 151.104 151.104 53.387 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006618 0.003821 0.000000 0.00000 SCALE2 0.000000 0.007642 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018731 0.00000