PDB Short entry for 4XBR HEADER PEPTIDE,TRANSFERASE 17-DEC-14 4XBR TITLE IN CELLULO CRYSTAL STRUCTURE OF PAK4 IN COMPLEX WITH INKA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN FAM212A,SERINE/THREONINE-PROTEIN KINASE PAK 4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 166-203,UNP RESIDUES 278-591; COMPND 5 SYNONYM: P21-ACTIVATED KINASE 4,PAK-4; COMPND 6 EC: 2.7.11.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FAM212A, C3ORF54, PAK4, KIAA1142; SOURCE 6 EXPRESSION_SYSTEM: CHLOROCEBUS AETHIOPS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: AFRICAN GREEN MONKEY; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9534; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: COS-7; SOURCE 10 EXPRESSION_SYSTEM_CELL: KIDNEY CELL CRL-1651 KEYWDS PAK4, INKA, CRYSTALLIZATION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.BASKARAN,K.C.ANG,P.V.ANEKAL,W.L.CHAN,J.M.GRIMES,E.MANSER, AUTHOR 2 R.C.ROBINSON REVDAT 3 04-OCT-17 4XBR 1 REMARK REVDAT 2 09-DEC-15 4XBR 1 JRNL REVDAT 1 02-DEC-15 4XBR 0 JRNL AUTH Y.BASKARAN,K.C.ANG,P.V.ANEKAL,W.L.CHAN,J.M.GRIMES,E.MANSER, JRNL AUTH 2 R.C.ROBINSON JRNL TITL AN IN CELLULO-DERIVED STRUCTURE OF PAK4 IN COMPLEX WITH ITS JRNL TITL 2 INHIBITOR INKA1 JRNL REF NAT COMMUN V. 6 8681 2015 JRNL REFN ESSN 2041-1723 JRNL PMID 26607847 JRNL DOI 10.1038/NCOMMS9681 REMARK 2 REMARK 2 RESOLUTION. 2.94 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.94 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 14702 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 776 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.94 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.02 REMARK 3 REFLECTION IN BIN (WORKING SET) : 906 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 82.54 REMARK 3 BIN R VALUE (WORKING SET) : 0.3210 REMARK 3 BIN FREE R VALUE SET COUNT : 44 REMARK 3 BIN FREE R VALUE : 0.3930 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2503 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 71.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.07000 REMARK 3 B22 (A**2) : 0.07000 REMARK 3 B33 (A**2) : -0.10000 REMARK 3 B12 (A**2) : 0.03000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.426 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.288 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.221 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.215 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2586 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3509 ; 1.498 ; 1.997 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 314 ; 6.393 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 114 ;33.621 ;23.246 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 458 ;19.327 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;18.551 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 394 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1921 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4XBR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-DEC-14. REMARK 100 THE DEPOSITION ID IS D_1000205325. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9686 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 0.3.6.0 REMARK 200 DATA SCALING SOFTWARE : XIA2 0.3.6.0 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15517 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.940 REMARK 200 RESOLUTION RANGE LOW (A) : 44.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 7.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 4FIE REMARK 200 REMARK 200 REMARK: HEXAGONAL ROD REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: IN CELLULO GROWTH, TEMPERATURE 310.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 31.25500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 31.25500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 31.25500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 154 REMARK 465 ASP A 155 REMARK 465 TYR A 156 REMARK 465 LYS A 157 REMARK 465 ASP A 158 REMARK 465 ASP A 159 REMARK 465 ASP A 160 REMARK 465 ASP A 161 REMARK 465 LYS A 162 REMARK 465 SER A 163 REMARK 465 GLY A 164 REMARK 465 SER A 165 REMARK 465 GLU A 166 REMARK 465 ALA A 167 REMARK 465 GLU A 168 REMARK 465 ASP A 169 REMARK 465 TRP A 170 REMARK 465 THR A 171 REMARK 465 ALA A 172 REMARK 465 ALA A 173 REMARK 465 LEU A 174 REMARK 465 TRP A 270 REMARK 465 MET A 271 REMARK 465 GLU A 272 REMARK 465 LEU A 273 REMARK 465 PRO A 274 REMARK 465 GLU A 275 REMARK 465 GLU A 276 REMARK 465 PHE A 277 REMARK 465 PRO A 278 REMARK 465 ALA A 279 REMARK 465 ALA A 280 REMARK 465 PRO A 281 REMARK 465 ALA A 282 REMARK 465 VAL A 283 REMARK 465 PRO A 284 REMARK 465 GLY A 285 REMARK 465 PRO A 286 REMARK 465 PRO A 287 REMARK 465 GLY A 288 REMARK 465 PRO A 289 REMARK 465 ARG A 290 REMARK 465 SER A 291 REMARK 465 PRO A 292 REMARK 465 GLN A 293 REMARK 465 ARG A 294 REMARK 465 GLU A 295 REMARK 465 PRO A 296 REMARK 465 THR A 590 REMARK 465 ARG A 591 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O1B ATP A 601 MG MG A 602 1.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 177 -40.05 -132.79 REMARK 500 LEU A 186 -129.82 -143.94 REMARK 500 LEU A 194 -34.56 -32.13 REMARK 500 VAL A 195 52.65 -95.48 REMARK 500 ARG A 298 -50.90 -29.91 REMARK 500 HIS A 375 146.00 -177.96 REMARK 500 ARG A 439 -1.88 58.48 REMARK 500 SER A 457 -22.23 -142.04 REMARK 500 ASP A 458 72.59 -111.42 REMARK 500 SER A 488 22.48 -77.47 REMARK 500 TYR A 515 28.69 47.13 REMARK 500 LEU A 552 -60.54 -92.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 603 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 458 OD2 REMARK 620 2 ATP A 601 O1A 81.7 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ATP A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 603 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4XBU RELATED DB: PDB DBREF 4XBR A 166 275 UNP Q96EL1 F212A_HUMAN 166 203 DBREF 4XBR A 278 591 UNP O96013 PAK4_HUMAN 278 591 SEQADV 4XBR MET A 154 UNP Q96EL1 EXPRESSION TAG SEQADV 4XBR ASP A 155 UNP Q96EL1 EXPRESSION TAG SEQADV 4XBR TYR A 156 UNP Q96EL1 EXPRESSION TAG SEQADV 4XBR LYS A 157 UNP Q96EL1 EXPRESSION TAG SEQADV 4XBR ASP A 158 UNP Q96EL1 EXPRESSION TAG SEQADV 4XBR ASP A 159 UNP Q96EL1 EXPRESSION TAG SEQADV 4XBR ASP A 160 UNP Q96EL1 EXPRESSION TAG SEQADV 4XBR ASP A 161 UNP Q96EL1 EXPRESSION TAG SEQADV 4XBR LYS A 162 UNP Q96EL1 EXPRESSION TAG SEQADV 4XBR SER A 163 UNP Q96EL1 EXPRESSION TAG SEQADV 4XBR GLY A 164 UNP Q96EL1 EXPRESSION TAG SEQADV 4XBR SER A 165 UNP Q96EL1 EXPRESSION TAG SEQADV 4XBR GLU A 276 UNP Q96EL1 LINKER SEQADV 4XBR PHE A 277 UNP Q96EL1 LINKER SEQRES 1 A 366 MET ASP TYR LYS ASP ASP ASP ASP LYS SER GLY SER GLU SEQRES 2 A 366 ALA GLU ASP TRP THR ALA ALA LEU LEU ASN ARG GLY ARG SEQRES 3 A 366 SER ARG GLN PRO LEU VAL LEU GLY ASP ASN CYS PHE ALA SEQRES 4 A 366 ASP LEU VAL HIS ASN TRP MET GLU LEU PRO GLU GLU PHE SEQRES 5 A 366 PRO ALA ALA PRO ALA VAL PRO GLY PRO PRO GLY PRO ARG SEQRES 6 A 366 SER PRO GLN ARG GLU PRO GLN ARG VAL SER HIS GLU GLN SEQRES 7 A 366 PHE ARG ALA ALA LEU GLN LEU VAL VAL ASP PRO GLY ASP SEQRES 8 A 366 PRO ARG SER TYR LEU ASP ASN PHE ILE LYS ILE GLY GLU SEQRES 9 A 366 GLY SER THR GLY ILE VAL CYS ILE ALA THR VAL ARG SER SEQRES 10 A 366 SER GLY LYS LEU VAL ALA VAL LYS LYS MET ASP LEU ARG SEQRES 11 A 366 LYS GLN GLN ARG ARG GLU LEU LEU PHE ASN GLU VAL VAL SEQRES 12 A 366 ILE MET ARG ASP TYR GLN HIS GLU ASN VAL VAL GLU MET SEQRES 13 A 366 TYR ASN SER TYR LEU VAL GLY ASP GLU LEU TRP VAL VAL SEQRES 14 A 366 MET GLU PHE LEU GLU GLY GLY ALA LEU THR ASP ILE VAL SEQRES 15 A 366 THR HIS THR ARG MET ASN GLU GLU GLN ILE ALA ALA VAL SEQRES 16 A 366 CYS LEU ALA VAL LEU GLN ALA LEU SER VAL LEU HIS ALA SEQRES 17 A 366 GLN GLY VAL ILE HIS ARG ASP ILE LYS SER ASP SER ILE SEQRES 18 A 366 LEU LEU THR HIS ASP GLY ARG VAL LYS LEU SER ASP PHE SEQRES 19 A 366 GLY PHE CYS ALA GLN VAL SER LYS GLU VAL PRO ARG ARG SEQRES 20 A 366 LYS SEP LEU VAL GLY THR PRO TYR TRP MET ALA PRO GLU SEQRES 21 A 366 LEU ILE SER ARG LEU PRO TYR GLY PRO GLU VAL ASP ILE SEQRES 22 A 366 TRP SER LEU GLY ILE MET VAL ILE GLU MET VAL ASP GLY SEQRES 23 A 366 GLU PRO PRO TYR PHE ASN GLU PRO PRO LEU LYS ALA MET SEQRES 24 A 366 LYS MET ILE ARG ASP ASN LEU PRO PRO ARG LEU LYS ASN SEQRES 25 A 366 LEU HIS LYS VAL SER PRO SER LEU LYS GLY PHE LEU ASP SEQRES 26 A 366 ARG LEU LEU VAL ARG ASP PRO ALA GLN ARG ALA THR ALA SEQRES 27 A 366 ALA GLU LEU LEU LYS HIS PRO PHE LEU ALA LYS ALA GLY SEQRES 28 A 366 PRO PRO ALA SER ILE VAL PRO LEU MET ARG GLN ASN ARG SEQRES 29 A 366 THR ARG MODRES 4XBR SEP A 474 SER MODIFIED RESIDUE HET SEP A 474 10 HET ATP A 601 31 HET MG A 602 1 HET MG A 603 1 HETNAM SEP PHOSPHOSERINE HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION HETSYN SEP PHOSPHONOSERINE FORMUL 1 SEP C3 H8 N O6 P FORMUL 2 ATP C10 H16 N5 O13 P3 FORMUL 3 MG 2(MG 2+) HELIX 1 AA1 CYS A 190 VAL A 195 1 6 HELIX 2 AA2 ARG A 298 VAL A 312 1 15 HELIX 3 AA3 ASP A 316 SER A 319 5 4 HELIX 4 AA4 ARG A 359 GLU A 361 5 3 HELIX 5 AA5 LEU A 362 TYR A 373 1 12 HELIX 6 AA6 LEU A 403 HIS A 409 1 7 HELIX 7 AA7 ASN A 413 GLN A 434 1 22 HELIX 8 AA8 LYS A 442 ASP A 444 5 3 HELIX 9 AA9 ASP A 458 CYS A 462 5 5 HELIX 10 AB1 THR A 478 MET A 482 5 5 HELIX 11 AB2 ALA A 483 SER A 488 1 6 HELIX 12 AB3 PRO A 494 GLY A 511 1 18 HELIX 13 AB4 PRO A 519 ASN A 530 1 12 HELIX 14 AB5 SER A 542 LEU A 553 1 12 HELIX 15 AB6 THR A 562 LEU A 567 1 6 HELIX 16 AB7 LYS A 568 ALA A 575 5 8 HELIX 17 AB8 PRO A 577 ARG A 589 5 13 SHEET 1 AA1 2 LEU A 184 VAL A 185 0 SHEET 2 AA1 2 VAL A 476 GLY A 477 -1 O GLY A 477 N LEU A 184 SHEET 1 AA2 5 LEU A 321 GLU A 329 0 SHEET 2 AA2 5 ILE A 334 VAL A 340 -1 O VAL A 335 N ILE A 327 SHEET 3 AA2 5 LEU A 346 ASP A 353 -1 O VAL A 349 N CYS A 336 SHEET 4 AA2 5 GLU A 390 MET A 395 -1 O LEU A 391 N MET A 352 SHEET 5 AA2 5 MET A 381 VAL A 387 -1 N VAL A 387 O GLU A 390 SHEET 1 AA3 3 GLY A 401 ALA A 402 0 SHEET 2 AA3 3 ILE A 446 LEU A 448 -1 O LEU A 448 N GLY A 401 SHEET 3 AA3 3 VAL A 454 LEU A 456 -1 O LYS A 455 N LEU A 447 SHEET 1 AA4 2 VAL A 436 ILE A 437 0 SHEET 2 AA4 2 ALA A 463 GLN A 464 -1 O ALA A 463 N ILE A 437 LINK OG SER A 331 MG MG A 602 1555 1555 2.32 LINK OD2 ASP A 458 MG MG A 603 1555 1555 2.00 LINK C LYS A 473 N SEP A 474 1555 1555 1.32 LINK C SEP A 474 N LEU A 475 1555 1555 1.33 LINK O1A ATP A 601 MG MG A 603 1555 1555 2.11 SITE 1 AC1 15 GLY A 330 SER A 331 THR A 332 VAL A 335 SITE 2 AC1 15 LYS A 350 MET A 395 GLU A 396 PHE A 397 SITE 3 AC1 15 LEU A 398 ASP A 440 ASP A 458 GLY A 460 SITE 4 AC1 15 PHE A 461 MG A 602 MG A 603 SITE 1 AC2 3 SER A 331 ATP A 601 MG A 603 SITE 1 AC3 3 ASP A 458 ATP A 601 MG A 602 CRYST1 144.040 144.040 62.510 90.00 90.00 120.00 P 63 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006943 0.004008 0.000000 0.00000 SCALE2 0.000000 0.008017 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015997 0.00000