PDB Short entry for 4XEF HEADER CELL ADHESION 23-DEC-14 4XEF TITLE PYK2-FAT COMPLEXED WITH LEUPAXIN LD MOTIF LD1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN-TYROSINE KINASE 2-BETA; COMPND 3 CHAIN: A, D; COMPND 4 FRAGMENT: FAT DOMAIN (UNP RESIDUES 871-1005); COMPND 5 SYNONYM: CALCIUM-DEPENDENT TYROSINE KINASE,CADTK,CALCIUM-REGULATED COMPND 6 NON-RECEPTOR PROLINE-RICH TYROSINE KINASE,CELL ADHESION KINASE BETA, COMPND 7 CAKB,FOCAL ADHESION KINASE 2,FADK 2,PROLINE-RICH TYROSINE KINASE 2, COMPND 8 RELATED ADHESION FOCAL TYROSINE KINASE,RAFTK; COMPND 9 EC: 2.7.10.2; COMPND 10 ENGINEERED: YES; COMPND 11 MUTATION: YES; COMPND 12 MOL_ID: 2; COMPND 13 MOLECULE: 20-MER PEPTIDE CONTAINING LD1 MOTIF OF LEUPAXIN; COMPND 14 CHAIN: B, C, E, F; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PTK2B, FAK2, PYK2, RAFTK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS 4-HELIX BUNDLE, FOCAL ADHESION, TYROSINE KINASE, LEUPAXIN, CELL KEYWDS 2 ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR D.J.MILLER REVDAT 6 27-SEP-23 4XEF 1 REMARK REVDAT 5 25-DEC-19 4XEF 1 REMARK REVDAT 4 27-SEP-17 4XEF 1 JRNL REMARK REVDAT 3 16-MAR-16 4XEF 1 JRNL REVDAT 2 24-FEB-16 4XEF 1 JRNL REVDAT 1 23-DEC-15 4XEF 0 JRNL AUTH M.S.VANAROTTI,D.B.FINKELSTEIN,C.D.GUIBAO,A.NOURSE, JRNL AUTH 2 D.J.MILLER,J.J.ZHENG JRNL TITL STRUCTURAL BASIS FOR THE INTERACTION BETWEEN PYK2-FAT DOMAIN JRNL TITL 2 AND LEUPAXIN LD REPEATS. JRNL REF BIOCHEMISTRY V. 55 1332 2016 JRNL REFN ISSN 0006-2960 JRNL PMID 26866573 JRNL DOI 10.1021/ACS.BIOCHEM.5B01274 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.83 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 12885 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.360 REMARK 3 FREE R VALUE TEST SET COUNT : 690 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.8318 - 4.2610 1.00 2649 142 0.2068 0.2372 REMARK 3 2 4.2610 - 3.3848 1.00 2475 144 0.2146 0.2881 REMARK 3 3 3.3848 - 2.9578 1.00 2451 150 0.2475 0.2675 REMARK 3 4 2.9578 - 2.6877 1.00 2439 129 0.2512 0.2856 REMARK 3 5 2.6877 - 2.5000 0.91 2181 125 0.2566 0.2960 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.330 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2438 REMARK 3 ANGLE : 1.138 3302 REMARK 3 CHIRALITY : 0.044 431 REMARK 3 PLANARITY : 0.004 421 REMARK 3 DIHEDRAL : 15.632 916 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 870 THROUGH 928 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.4210 16.6275 18.0353 REMARK 3 T TENSOR REMARK 3 T11: 0.2649 T22: 0.2760 REMARK 3 T33: 0.3328 T12: -0.0571 REMARK 3 T13: 0.0261 T23: -0.0033 REMARK 3 L TENSOR REMARK 3 L11: 1.7317 L22: 2.0501 REMARK 3 L33: 2.8096 L12: -0.1052 REMARK 3 L13: 0.0975 L23: -0.2978 REMARK 3 S TENSOR REMARK 3 S11: -0.0110 S12: 0.0128 S13: 0.0196 REMARK 3 S21: 0.0735 S22: 0.0668 S23: -0.2027 REMARK 3 S31: -0.2998 S32: 0.6989 S33: 0.0376 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 929 THROUGH 968 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.9388 21.1956 23.8892 REMARK 3 T TENSOR REMARK 3 T11: 0.3900 T22: 0.3855 REMARK 3 T33: 0.3987 T12: 0.0078 REMARK 3 T13: 0.0205 T23: -0.0306 REMARK 3 L TENSOR REMARK 3 L11: 0.9987 L22: 0.9990 REMARK 3 L33: 2.8883 L12: -0.4759 REMARK 3 L13: 0.5756 L23: -0.5077 REMARK 3 S TENSOR REMARK 3 S11: -0.0247 S12: -0.2140 S13: 0.1028 REMARK 3 S21: 0.2364 S22: -0.0018 S23: 0.0964 REMARK 3 S31: -0.5723 S32: -0.6820 S33: 0.0217 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 969 THROUGH 1005 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.5010 11.9460 19.7552 REMARK 3 T TENSOR REMARK 3 T11: 0.2568 T22: 0.2844 REMARK 3 T33: 0.3439 T12: -0.0797 REMARK 3 T13: 0.0474 T23: 0.0177 REMARK 3 L TENSOR REMARK 3 L11: 1.8071 L22: 1.6005 REMARK 3 L33: 3.1988 L12: -0.5920 REMARK 3 L13: -0.0779 L23: 0.1862 REMARK 3 S TENSOR REMARK 3 S11: 0.1826 S12: 0.0082 S13: -0.1914 REMARK 3 S21: 0.1499 S22: -0.0541 S23: -0.0582 REMARK 3 S31: 0.6290 S32: -0.3545 S33: -0.0260 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 871 THROUGH 932 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.0619 52.5270 11.4863 REMARK 3 T TENSOR REMARK 3 T11: 0.1827 T22: 0.3215 REMARK 3 T33: 0.2981 T12: -0.0509 REMARK 3 T13: -0.0013 T23: 0.0002 REMARK 3 L TENSOR REMARK 3 L11: 1.9392 L22: 2.5443 REMARK 3 L33: 2.0718 L12: -0.0113 REMARK 3 L13: -0.1616 L23: -0.5485 REMARK 3 S TENSOR REMARK 3 S11: 0.1044 S12: -0.1283 S13: -0.1615 REMARK 3 S21: 0.0697 S22: -0.0788 S23: -0.2927 REMARK 3 S31: -0.1284 S32: 0.6476 S33: -0.0262 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 933 THROUGH 966 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.8773 57.8690 18.2989 REMARK 3 T TENSOR REMARK 3 T11: 0.3830 T22: 0.3505 REMARK 3 T33: 0.2910 T12: -0.0392 REMARK 3 T13: 0.0070 T23: -0.0129 REMARK 3 L TENSOR REMARK 3 L11: 1.9136 L22: 1.6327 REMARK 3 L33: 4.3989 L12: 0.0800 REMARK 3 L13: 1.1875 L23: 0.3949 REMARK 3 S TENSOR REMARK 3 S11: 0.0172 S12: -0.4885 S13: 0.0557 REMARK 3 S21: 0.1053 S22: -0.2005 S23: 0.1623 REMARK 3 S31: -0.6838 S32: -0.5603 S33: -0.0871 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 967 THROUGH 1004 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.2435 48.4467 16.3146 REMARK 3 T TENSOR REMARK 3 T11: 0.2841 T22: 0.3616 REMARK 3 T33: 0.3526 T12: -0.1007 REMARK 3 T13: -0.0074 T23: 0.0316 REMARK 3 L TENSOR REMARK 3 L11: 0.8294 L22: 2.1293 REMARK 3 L33: 4.4531 L12: 0.1433 REMARK 3 L13: 0.4495 L23: 0.7297 REMARK 3 S TENSOR REMARK 3 S11: 0.5156 S12: -0.3585 S13: -0.5327 REMARK 3 S21: 0.2197 S22: -0.0471 S23: -0.2579 REMARK 3 S31: 0.6133 S32: -0.3191 S33: -0.1090 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 13 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.3597 30.7371 21.3524 REMARK 3 T TENSOR REMARK 3 T11: 0.8983 T22: 0.4438 REMARK 3 T33: 0.7212 T12: 0.0749 REMARK 3 T13: 0.0292 T23: -0.0106 REMARK 3 L TENSOR REMARK 3 L11: 1.2657 L22: 0.2775 REMARK 3 L33: 0.3970 L12: -0.3496 REMARK 3 L13: -0.7555 L23: 0.1670 REMARK 3 S TENSOR REMARK 3 S11: 0.0757 S12: 0.4750 S13: 0.6231 REMARK 3 S21: 0.9670 S22: 0.0861 S23: -0.3842 REMARK 3 S31: -1.1060 S32: 0.0857 S33: 0.1487 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.5328 4.1786 20.6665 REMARK 3 T TENSOR REMARK 3 T11: 0.5992 T22: 0.3678 REMARK 3 T33: 0.7235 T12: 0.0078 REMARK 3 T13: 0.0587 T23: 0.1362 REMARK 3 L TENSOR REMARK 3 L11: 3.2783 L22: 1.7592 REMARK 3 L33: 4.0684 L12: -0.0575 REMARK 3 L13: -0.1493 L23: 0.0683 REMARK 3 S TENSOR REMARK 3 S11: 0.2616 S12: -0.2764 S13: -0.7281 REMARK 3 S21: 0.0630 S22: -0.1380 S23: -0.3251 REMARK 3 S31: 0.7744 S32: 0.3722 S33: -0.0246 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 2 THROUGH 13 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.3125 67.0878 14.3634 REMARK 3 T TENSOR REMARK 3 T11: 0.5391 T22: 0.3096 REMARK 3 T33: 0.3572 T12: -0.0328 REMARK 3 T13: 0.0682 T23: 0.0014 REMARK 3 L TENSOR REMARK 3 L11: 4.3525 L22: 7.6629 REMARK 3 L33: 5.2003 L12: 1.7681 REMARK 3 L13: -0.7526 L23: 2.6539 REMARK 3 S TENSOR REMARK 3 S11: 0.1465 S12: -0.3242 S13: 0.5342 REMARK 3 S21: 0.2232 S22: -0.5639 S23: 0.4886 REMARK 3 S31: -0.6844 S32: 0.2818 S33: 0.5652 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 1 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.7540 40.2879 17.4850 REMARK 3 T TENSOR REMARK 3 T11: 0.5979 T22: 0.6635 REMARK 3 T33: 0.9478 T12: -0.0728 REMARK 3 T13: -0.0549 T23: 0.1866 REMARK 3 L TENSOR REMARK 3 L11: 1.6512 L22: 2.1647 REMARK 3 L33: 1.2259 L12: 0.3882 REMARK 3 L13: 1.1053 L23: 0.9490 REMARK 3 S TENSOR REMARK 3 S11: 0.0056 S12: -0.6555 S13: -0.3116 REMARK 3 S21: -0.0035 S22: 0.2261 S23: -0.0619 REMARK 3 S31: 0.7734 S32: 0.3961 S33: -0.0372 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4XEF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-DEC-14. REMARK 100 THE DEPOSITION ID IS D_1000205523. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97120 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12937 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.55600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3GM3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 400 NL DROP CONTAINED 200 NL REMARK 280 PROTEIN/LD1 PEPTIDE MIXTURE (20 MM MES, PH 6.2, 1 MM PROTEIN, REMARK 280 AND 2 MM PEPTIDE) AND 200 NL WELL SOLUTION (100 MM TRIS, PH 8.5, REMARK 280 0.2 M MGCL2, AND 30% PEG 4000)., VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 13.74100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 82.70900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.04700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 82.70900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 13.74100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.04700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 867 REMARK 465 SER A 868 REMARK 465 HIS A 869 REMARK 465 LEU B 16 REMARK 465 GLN B 17 REMARK 465 ASP B 18 REMARK 465 SER B 19 REMARK 465 ASP B 20 REMARK 465 SER C 14 REMARK 465 THR C 15 REMARK 465 LEU C 16 REMARK 465 GLN C 17 REMARK 465 ASP C 18 REMARK 465 SER C 19 REMARK 465 ASP C 20 REMARK 465 GLY D 867 REMARK 465 SER D 868 REMARK 465 HIS D 869 REMARK 465 MET D 870 REMARK 465 HIS D 1005 REMARK 465 LEU E 16 REMARK 465 GLN E 17 REMARK 465 ASP E 18 REMARK 465 SER E 19 REMARK 465 ASP E 20 REMARK 465 MET F 1 REMARK 465 SER F 14 REMARK 465 THR F 15 REMARK 465 LEU F 16 REMARK 465 GLN F 17 REMARK 465 ASP F 18 REMARK 465 SER F 19 REMARK 465 ASP F 20 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 870 CG SD CE REMARK 470 GLN A 900 CG CD OE1 NE2 REMARK 470 GLU A 904 CG CD OE1 OE2 REMARK 470 HIS A1005 CG ND1 CD2 CE1 NE2 REMARK 470 GLU B 9 CG CD OE1 OE2 REMARK 470 GLU B 12 CG CD OE1 OE2 REMARK 470 THR B 15 OG1 CG2 REMARK 470 GLU C 2 CG CD OE1 OE2 REMARK 470 GLU C 3 CG CD OE1 OE2 REMARK 470 GLU C 9 CG CD OE1 OE2 REMARK 470 GLU C 10 CG CD OE1 OE2 REMARK 470 GLU C 12 CB CG CD OE1 OE2 REMARK 470 ARG C 13 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 904 CG CD OE1 OE2 REMARK 470 VAL D 965 CG1 CG2 REMARK 470 ASN D1002 CG OD1 ND2 REMARK 470 MET E 1 CG SD CE REMARK 470 GLU E 2 CG CD OE1 OE2 REMARK 470 GLU E 9 CG CD OE1 OE2 REMARK 470 SER E 14 OG REMARK 470 THR E 15 OG1 CG2 REMARK 470 GLU F 3 CG CD OE1 OE2 REMARK 470 GLU F 9 CG CD OE1 OE2 REMARK 470 GLU F 12 CG CD OE1 OE2 REMARK 470 ARG F 13 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU D1003 CB - CG - CD1 ANGL. DEV. = -12.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 900 37.26 -89.05 REMARK 500 GLU F 12 10.24 -68.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4XEK RELATED DB: PDB REMARK 900 RELATED ID: 4XEV RELATED DB: PDB DBREF 4XEF A 871 1005 UNP Q14289 FAK2_HUMAN 871 1005 DBREF 4XEF D 871 1005 UNP Q14289 FAK2_HUMAN 871 1005 DBREF 4XEF C 1 20 PDB 4XEF 4XEF 1 20 DBREF 4XEF B 1 20 PDB 4XEF 4XEF 1 20 DBREF 4XEF F 1 20 PDB 4XEF 4XEF 1 20 DBREF 4XEF E 1 20 PDB 4XEF 4XEF 1 20 SEQADV 4XEF GLY A 867 UNP Q14289 EXPRESSION TAG SEQADV 4XEF SER A 868 UNP Q14289 EXPRESSION TAG SEQADV 4XEF HIS A 869 UNP Q14289 EXPRESSION TAG SEQADV 4XEF MET A 870 UNP Q14289 EXPRESSION TAG SEQADV 4XEF SER A 899 UNP Q14289 CYS 899 ENGINEERED MUTATION SEQADV 4XEF ALA A 972 UNP Q14289 CYS 972 ENGINEERED MUTATION SEQADV 4XEF GLY D 867 UNP Q14289 EXPRESSION TAG SEQADV 4XEF SER D 868 UNP Q14289 EXPRESSION TAG SEQADV 4XEF HIS D 869 UNP Q14289 EXPRESSION TAG SEQADV 4XEF MET D 870 UNP Q14289 EXPRESSION TAG SEQADV 4XEF SER D 899 UNP Q14289 CYS 899 ENGINEERED MUTATION SEQADV 4XEF ALA D 972 UNP Q14289 CYS 972 ENGINEERED MUTATION SEQRES 1 A 139 GLY SER HIS MET ALA ASN LEU ASP ARG THR ASP ASP LEU SEQRES 2 A 139 VAL TYR LEU ASN VAL MET GLU LEU VAL ARG ALA VAL LEU SEQRES 3 A 139 GLU LEU LYS ASN GLU LEU SER GLN LEU PRO PRO GLU GLY SEQRES 4 A 139 TYR VAL VAL VAL VAL LYS ASN VAL GLY LEU THR LEU ARG SEQRES 5 A 139 LYS LEU ILE GLY SER VAL ASP ASP LEU LEU PRO SER LEU SEQRES 6 A 139 PRO SER SER SER ARG THR GLU ILE GLU GLY THR GLN LYS SEQRES 7 A 139 LEU LEU ASN LYS ASP LEU ALA GLU LEU ILE ASN LYS MET SEQRES 8 A 139 ARG LEU ALA GLN GLN ASN ALA VAL THR SER LEU SER GLU SEQRES 9 A 139 GLU ALA LYS ARG GLN MET LEU THR ALA SER HIS THR LEU SEQRES 10 A 139 ALA VAL ASP ALA LYS ASN LEU LEU ASP ALA VAL ASP GLN SEQRES 11 A 139 ALA LYS VAL LEU ALA ASN LEU ALA HIS SEQRES 1 B 20 MET GLU GLU LEU ASP ALA LEU LEU GLU GLU LEU GLU ARG SEQRES 2 B 20 SER THR LEU GLN ASP SER ASP SEQRES 1 C 20 MET GLU GLU LEU ASP ALA LEU LEU GLU GLU LEU GLU ARG SEQRES 2 C 20 SER THR LEU GLN ASP SER ASP SEQRES 1 D 139 GLY SER HIS MET ALA ASN LEU ASP ARG THR ASP ASP LEU SEQRES 2 D 139 VAL TYR LEU ASN VAL MET GLU LEU VAL ARG ALA VAL LEU SEQRES 3 D 139 GLU LEU LYS ASN GLU LEU SER GLN LEU PRO PRO GLU GLY SEQRES 4 D 139 TYR VAL VAL VAL VAL LYS ASN VAL GLY LEU THR LEU ARG SEQRES 5 D 139 LYS LEU ILE GLY SER VAL ASP ASP LEU LEU PRO SER LEU SEQRES 6 D 139 PRO SER SER SER ARG THR GLU ILE GLU GLY THR GLN LYS SEQRES 7 D 139 LEU LEU ASN LYS ASP LEU ALA GLU LEU ILE ASN LYS MET SEQRES 8 D 139 ARG LEU ALA GLN GLN ASN ALA VAL THR SER LEU SER GLU SEQRES 9 D 139 GLU ALA LYS ARG GLN MET LEU THR ALA SER HIS THR LEU SEQRES 10 D 139 ALA VAL ASP ALA LYS ASN LEU LEU ASP ALA VAL ASP GLN SEQRES 11 D 139 ALA LYS VAL LEU ALA ASN LEU ALA HIS SEQRES 1 E 20 MET GLU GLU LEU ASP ALA LEU LEU GLU GLU LEU GLU ARG SEQRES 2 E 20 SER THR LEU GLN ASP SER ASP SEQRES 1 F 20 MET GLU GLU LEU ASP ALA LEU LEU GLU GLU LEU GLU ARG SEQRES 2 F 20 SER THR LEU GLN ASP SER ASP FORMUL 7 HOH *12(H2 O) HELIX 1 AA1 ASP A 878 LEU A 898 1 21 HELIX 2 AA2 GLU A 904 LEU A 928 1 25 HELIX 3 AA3 SER A 935 ASN A 963 1 29 HELIX 4 AA4 LEU A 968 LEU A 1003 1 36 HELIX 5 AA5 GLU B 2 THR B 15 1 14 HELIX 6 AA6 GLU C 2 LEU C 11 1 10 HELIX 7 AA7 ASP D 878 SER D 899 1 22 HELIX 8 AA8 GLU D 904 LEU D 928 1 25 HELIX 9 AA9 PRO D 929 LEU D 931 5 3 HELIX 10 AB1 PRO D 932 ASN D 963 1 32 HELIX 11 AB2 LEU D 968 LEU D 1003 1 36 HELIX 12 AB3 GLU E 2 SER E 14 1 13 HELIX 13 AB4 GLU F 3 GLU F 12 1 10 CRYST1 27.482 78.094 165.418 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.036387 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012805 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006045 0.00000