PDB Short entry for 4Y2H HEADER TRANSFERASE 09-FEB-15 4Y2H TITLE CRYSTAL STRUCTURE OF HUMAN PROTEIN ARGININE METHYLTRANSFERASE PRMT6 TITLE 2 BOUND TO SAH AND AN ARYL PYRAZOLE INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN ARGININE N-METHYLTRANSFERASE 6; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 27-375; COMPND 5 SYNONYM: HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN METHYLTRANSFERASE- COMPND 6 LIKE PROTEIN 6,HISTONE-ARGININE N-METHYLTRANSFERASE PRMT6; COMPND 7 EC: 2.1.1.-,2.1.1.125; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PRMT6, HRMT1L6; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.K.SWINGER,P.A.BORIACK-SJODIN REVDAT 4 28-FEB-24 4Y2H 1 REMARK REVDAT 3 22-NOV-17 4Y2H 1 SOURCE REMARK REVDAT 2 08-JUL-15 4Y2H 1 JRNL REVDAT 1 22-APR-15 4Y2H 0 JRNL AUTH L.H.MITCHELL,A.E.DREW,S.A.RIBICH,N.RIOUX,K.K.SWINGER, JRNL AUTH 2 S.L.JACQUES,T.LINGARAJ,P.A.BORIACK-SJODIN,N.J.WATERS, JRNL AUTH 3 T.J.WIGLE,O.MORADEI,L.JIN,T.RIERA,M.PORTER-SCOTT,M.P.MOYER, JRNL AUTH 4 J.J.SMITH,R.CHESWORTH,R.A.COPELAND JRNL TITL ARYL PYRAZOLES AS POTENT INHIBITORS OF ARGININE JRNL TITL 2 METHYLTRANSFERASES: IDENTIFICATION OF THE FIRST PRMT6 TOOL JRNL TITL 3 COMPOUND. JRNL REF ACS MED.CHEM.LETT. V. 6 655 2015 JRNL REFN ISSN 1948-5875 JRNL PMID 26101569 JRNL DOI 10.1021/ACSMEDCHEMLETT.5B00071 REMARK 2 REMARK 2 RESOLUTION. 2.37 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.37 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.74 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 34050 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1794 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.37 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.43 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2489 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.81 REMARK 3 BIN R VALUE (WORKING SET) : 0.2470 REMARK 3 BIN FREE R VALUE SET COUNT : 137 REMARK 3 BIN FREE R VALUE : 0.2940 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5452 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 94 REMARK 3 SOLVENT ATOMS : 262 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.45000 REMARK 3 B22 (A**2) : 0.45000 REMARK 3 B33 (A**2) : -0.89000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.322 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.231 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.159 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.754 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.903 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5688 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7711 ; 1.444 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 691 ; 6.014 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 269 ;37.058 ;23.086 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 945 ;16.577 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 54 ;16.104 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 832 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4362 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2770 ; 1.277 ; 2.218 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3459 ; 2.202 ; 3.321 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2918 ; 1.871 ; 2.425 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4Y2H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1000206749. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.1.28, XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35874 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.370 REMARK 200 RESOLUTION RANGE LOW (A) : 27.740 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.14400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.37 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.59400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MGCL, MES BUFFER PH 6.5, ISOPROPANOL, REMARK 280 PEG 4000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.74500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 67.11750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 22.37250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 24 REMARK 465 ILE A 25 REMARK 465 ALA A 26 REMARK 465 ALA A 27 REMARK 465 GLU A 28 REMARK 465 ARG A 29 REMARK 465 GLU A 30 REMARK 465 ALA A 31 REMARK 465 ALA A 32 REMARK 465 LEU A 33 REMARK 465 GLU A 34 REMARK 465 ARG A 35 REMARK 465 PRO A 36 REMARK 465 ARG A 37 REMARK 465 ARG A 38 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG B 29 O HOH B 501 1.83 REMARK 500 O HOH B 516 O HOH B 523 1.96 REMARK 500 NH1 ARG A 71 O HOH A 628 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 545 O HOH B 521 2654 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 344 CA - CB - CG ANGL. DEV. = 22.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 161 -55.80 67.77 REMARK 500 GLU A 164 -18.54 83.45 REMARK 500 LYS A 319 -133.97 55.67 REMARK 500 GLN A 364 150.97 -49.14 REMARK 500 GLU A 374 141.97 -38.96 REMARK 500 LEU B 161 -46.25 68.42 REMARK 500 GLU B 164 -26.12 85.67 REMARK 500 GLU B 300 11.41 -65.54 REMARK 500 GLU B 302 -29.03 64.93 REMARK 500 LYS B 303 -169.61 91.78 REMARK 500 LYS B 319 -129.95 49.19 REMARK 500 GLU B 374 134.92 -36.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 49K A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 49K B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4Y30 RELATED DB: PDB DBREF 4Y2H A 27 375 UNP Q96LA8 ANM6_HUMAN 27 375 DBREF 4Y2H B 27 375 UNP Q96LA8 ANM6_HUMAN 27 375 SEQADV 4Y2H SER A 24 UNP Q96LA8 EXPRESSION TAG SEQADV 4Y2H ILE A 25 UNP Q96LA8 EXPRESSION TAG SEQADV 4Y2H ALA A 26 UNP Q96LA8 EXPRESSION TAG SEQADV 4Y2H SER B 24 UNP Q96LA8 EXPRESSION TAG SEQADV 4Y2H ILE B 25 UNP Q96LA8 EXPRESSION TAG SEQADV 4Y2H ALA B 26 UNP Q96LA8 EXPRESSION TAG SEQRES 1 A 352 SER ILE ALA ALA GLU ARG GLU ALA ALA LEU GLU ARG PRO SEQRES 2 A 352 ARG ARG THR LYS ARG GLU ARG ASP GLN LEU TYR TYR GLU SEQRES 3 A 352 CYS TYR SER ASP VAL SER VAL HIS GLU GLU MET ILE ALA SEQRES 4 A 352 ASP ARG VAL ARG THR ASP ALA TYR ARG LEU GLY ILE LEU SEQRES 5 A 352 ARG ASN TRP ALA ALA LEU ARG GLY LYS THR VAL LEU ASP SEQRES 6 A 352 VAL GLY ALA GLY THR GLY ILE LEU SER ILE PHE CYS ALA SEQRES 7 A 352 GLN ALA GLY ALA ARG ARG VAL TYR ALA VAL GLU ALA SER SEQRES 8 A 352 ALA ILE TRP GLN GLN ALA ARG GLU VAL VAL ARG PHE ASN SEQRES 9 A 352 GLY LEU GLU ASP ARG VAL HIS VAL LEU PRO GLY PRO VAL SEQRES 10 A 352 GLU THR VAL GLU LEU PRO GLU GLN VAL ASP ALA ILE VAL SEQRES 11 A 352 SER GLU TRP MET GLY TYR GLY LEU LEU HIS GLU SER MET SEQRES 12 A 352 LEU SER SER VAL LEU HIS ALA ARG THR LYS TRP LEU LYS SEQRES 13 A 352 GLU GLY GLY LEU LEU LEU PRO ALA SER ALA GLU LEU PHE SEQRES 14 A 352 ILE ALA PRO ILE SER ASP GLN MET LEU GLU TRP ARG LEU SEQRES 15 A 352 GLY PHE TRP SER GLN VAL LYS GLN HIS TYR GLY VAL ASP SEQRES 16 A 352 MET SER CYS LEU GLU GLY PHE ALA THR ARG CYS LEU MET SEQRES 17 A 352 GLY HIS SER GLU ILE VAL VAL GLN GLY LEU SER GLY GLU SEQRES 18 A 352 ASP VAL LEU ALA ARG PRO GLN ARG PHE ALA GLN LEU GLU SEQRES 19 A 352 LEU SER ARG ALA GLY LEU GLU GLN GLU LEU GLU ALA GLY SEQRES 20 A 352 VAL GLY GLY ARG PHE ARG CYS SER CYS TYR GLY SER ALA SEQRES 21 A 352 PRO MET HIS GLY PHE ALA ILE TRP PHE GLN VAL THR PHE SEQRES 22 A 352 PRO GLY GLY GLU SER GLU LYS PRO LEU VAL LEU SER THR SEQRES 23 A 352 SER PRO PHE HIS PRO ALA THR HIS TRP LYS GLN ALA LEU SEQRES 24 A 352 LEU TYR LEU ASN GLU PRO VAL GLN VAL GLU GLN ASP THR SEQRES 25 A 352 ASP VAL SER GLY GLU ILE THR LEU LEU PRO SER ARG ASP SEQRES 26 A 352 ASN PRO ARG ARG LEU ARG VAL LEU LEU ARG TYR LYS VAL SEQRES 27 A 352 GLY ASP GLN GLU GLU LYS THR LYS ASP PHE ALA MET GLU SEQRES 28 A 352 ASP SEQRES 1 B 352 SER ILE ALA ALA GLU ARG GLU ALA ALA LEU GLU ARG PRO SEQRES 2 B 352 ARG ARG THR LYS ARG GLU ARG ASP GLN LEU TYR TYR GLU SEQRES 3 B 352 CYS TYR SER ASP VAL SER VAL HIS GLU GLU MET ILE ALA SEQRES 4 B 352 ASP ARG VAL ARG THR ASP ALA TYR ARG LEU GLY ILE LEU SEQRES 5 B 352 ARG ASN TRP ALA ALA LEU ARG GLY LYS THR VAL LEU ASP SEQRES 6 B 352 VAL GLY ALA GLY THR GLY ILE LEU SER ILE PHE CYS ALA SEQRES 7 B 352 GLN ALA GLY ALA ARG ARG VAL TYR ALA VAL GLU ALA SER SEQRES 8 B 352 ALA ILE TRP GLN GLN ALA ARG GLU VAL VAL ARG PHE ASN SEQRES 9 B 352 GLY LEU GLU ASP ARG VAL HIS VAL LEU PRO GLY PRO VAL SEQRES 10 B 352 GLU THR VAL GLU LEU PRO GLU GLN VAL ASP ALA ILE VAL SEQRES 11 B 352 SER GLU TRP MET GLY TYR GLY LEU LEU HIS GLU SER MET SEQRES 12 B 352 LEU SER SER VAL LEU HIS ALA ARG THR LYS TRP LEU LYS SEQRES 13 B 352 GLU GLY GLY LEU LEU LEU PRO ALA SER ALA GLU LEU PHE SEQRES 14 B 352 ILE ALA PRO ILE SER ASP GLN MET LEU GLU TRP ARG LEU SEQRES 15 B 352 GLY PHE TRP SER GLN VAL LYS GLN HIS TYR GLY VAL ASP SEQRES 16 B 352 MET SER CYS LEU GLU GLY PHE ALA THR ARG CYS LEU MET SEQRES 17 B 352 GLY HIS SER GLU ILE VAL VAL GLN GLY LEU SER GLY GLU SEQRES 18 B 352 ASP VAL LEU ALA ARG PRO GLN ARG PHE ALA GLN LEU GLU SEQRES 19 B 352 LEU SER ARG ALA GLY LEU GLU GLN GLU LEU GLU ALA GLY SEQRES 20 B 352 VAL GLY GLY ARG PHE ARG CYS SER CYS TYR GLY SER ALA SEQRES 21 B 352 PRO MET HIS GLY PHE ALA ILE TRP PHE GLN VAL THR PHE SEQRES 22 B 352 PRO GLY GLY GLU SER GLU LYS PRO LEU VAL LEU SER THR SEQRES 23 B 352 SER PRO PHE HIS PRO ALA THR HIS TRP LYS GLN ALA LEU SEQRES 24 B 352 LEU TYR LEU ASN GLU PRO VAL GLN VAL GLU GLN ASP THR SEQRES 25 B 352 ASP VAL SER GLY GLU ILE THR LEU LEU PRO SER ARG ASP SEQRES 26 B 352 ASN PRO ARG ARG LEU ARG VAL LEU LEU ARG TYR LYS VAL SEQRES 27 B 352 GLY ASP GLN GLU GLU LYS THR LYS ASP PHE ALA MET GLU SEQRES 28 B 352 ASP HET SAH A 401 26 HET 49K A 402 18 HET SAH B 401 26 HET 49K B 402 18 HET GOL B 403 6 HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETNAM 49K N-{[5-(4-FLUOROPHENYL)-1H-PYRAZOL-4-YL]METHYL}-N- HETNAM 2 49K METHYLETHANE-1,2-DIAMINE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 SAH 2(C14 H20 N6 O5 S) FORMUL 4 49K 2(C13 H17 F N4) FORMUL 7 GOL C3 H8 O3 FORMUL 8 HOH *262(H2 O) HELIX 1 AA1 LYS A 40 SER A 52 1 13 HELIX 2 AA2 ASP A 53 ASP A 63 1 11 HELIX 3 AA3 ASP A 63 ARG A 76 1 14 HELIX 4 AA4 ASN A 77 ARG A 82 1 6 HELIX 5 AA5 GLY A 94 ALA A 103 1 10 HELIX 6 AA6 ILE A 116 ASN A 127 1 12 HELIX 7 AA7 MET A 166 TRP A 177 1 12 HELIX 8 AA8 ASP A 198 GLY A 206 1 9 HELIX 9 AA9 PHE A 207 SER A 209 5 3 HELIX 10 AB1 GLN A 210 GLY A 216 1 7 HELIX 11 AB2 MET A 219 CYS A 221 5 3 HELIX 12 AB3 LEU A 222 MET A 231 1 10 HELIX 13 AB4 SER A 242 VAL A 246 5 5 HELIX 14 AB5 GLY A 262 GLY A 270 1 9 HELIX 15 AB6 ILE B 25 CYS B 50 1 26 HELIX 16 AB7 ASP B 53 ASP B 63 1 11 HELIX 17 AB8 ASP B 63 ARG B 76 1 14 HELIX 18 AB9 ASN B 77 ARG B 82 1 6 HELIX 19 AC1 GLY B 94 GLY B 104 1 11 HELIX 20 AC2 ILE B 116 ASN B 127 1 12 HELIX 21 AC3 MET B 166 TRP B 177 1 12 HELIX 22 AC4 ASP B 198 GLY B 216 1 19 HELIX 23 AC5 MET B 219 CYS B 221 5 3 HELIX 24 AC6 LEU B 222 GLY B 232 1 11 HELIX 25 AC7 SER B 242 VAL B 246 5 5 HELIX 26 AC8 GLY B 262 GLY B 270 1 9 SHEET 1 AA1 5 VAL A 133 PRO A 137 0 SHEET 2 AA1 5 ARG A 107 GLU A 112 1 N ALA A 110 O LEU A 136 SHEET 3 AA1 5 THR A 85 VAL A 89 1 N VAL A 86 O TYR A 109 SHEET 4 AA1 5 VAL A 149 VAL A 153 1 O ALA A 151 N LEU A 87 SHEET 5 AA1 5 LEU A 178 LEU A 185 1 O LEU A 183 N ILE A 152 SHEET 1 AA2 9 GLN A 251 GLU A 257 0 SHEET 2 AA2 9 SER A 188 ILE A 196 -1 N ALA A 189 O LEU A 256 SHEET 3 AA2 9 ALA A 283 PHE A 296 -1 O GLY A 287 N ILE A 196 SHEET 4 AA2 9 GLN A 320 VAL A 331 -1 O LEU A 323 N PHE A 288 SHEET 5 AA2 9 GLU A 235 GLN A 239 -1 N VAL A 237 O LEU A 322 SHEET 6 AA2 9 LYS A 367 MET A 373 1 O ALA A 372 N ILE A 236 SHEET 7 AA2 9 LEU A 353 VAL A 361 -1 N TYR A 359 O LYS A 367 SHEET 8 AA2 9 ASP A 336 PRO A 345 -1 N LEU A 344 O ARG A 354 SHEET 9 AA2 9 VAL A 271 SER A 278 -1 N VAL A 271 O LEU A 343 SHEET 1 AA3 4 GLN A 251 GLU A 257 0 SHEET 2 AA3 4 SER A 188 ILE A 196 -1 N ALA A 189 O LEU A 256 SHEET 3 AA3 4 ALA A 283 PHE A 296 -1 O GLY A 287 N ILE A 196 SHEET 4 AA3 4 LEU A 305 SER A 308 -1 O LEU A 305 N PHE A 296 SHEET 1 AA4 5 VAL B 133 PRO B 137 0 SHEET 2 AA4 5 ARG B 107 GLU B 112 1 N VAL B 108 O HIS B 134 SHEET 3 AA4 5 THR B 85 VAL B 89 1 N VAL B 86 O TYR B 109 SHEET 4 AA4 5 VAL B 149 VAL B 153 1 O VAL B 153 N LEU B 87 SHEET 5 AA4 5 LEU B 178 LEU B 185 1 O LYS B 179 N VAL B 149 SHEET 1 AA5 9 GLN B 251 GLU B 257 0 SHEET 2 AA5 9 SER B 188 ILE B 196 -1 N ALA B 189 O LEU B 256 SHEET 3 AA5 9 ALA B 283 PHE B 296 -1 O GLN B 293 N GLU B 190 SHEET 4 AA5 9 GLN B 320 VAL B 331 -1 O VAL B 329 N MET B 285 SHEET 5 AA5 9 GLU B 235 GLN B 239 -1 N VAL B 237 O LEU B 322 SHEET 6 AA5 9 LYS B 367 MET B 373 1 O ALA B 372 N ILE B 236 SHEET 7 AA5 9 LEU B 353 VAL B 361 -1 N LEU B 357 O LYS B 369 SHEET 8 AA5 9 ASP B 336 PRO B 345 -1 N LEU B 344 O ARG B 354 SHEET 9 AA5 9 VAL B 271 SER B 278 -1 N VAL B 271 O LEU B 343 SHEET 1 AA6 4 GLN B 251 GLU B 257 0 SHEET 2 AA6 4 SER B 188 ILE B 196 -1 N ALA B 189 O LEU B 256 SHEET 3 AA6 4 ALA B 283 PHE B 296 -1 O GLN B 293 N GLU B 190 SHEET 4 AA6 4 LEU B 305 SER B 308 -1 O LEU B 307 N VAL B 294 CISPEP 1 LEU A 185 PRO A 186 0 -8.09 CISPEP 2 LEU B 185 PRO B 186 0 -7.92 SITE 1 AC1 22 TYR A 47 TYR A 48 TYR A 51 MET A 60 SITE 2 AC1 22 ARG A 66 GLY A 90 ALA A 91 GLY A 92 SITE 3 AC1 22 ILE A 95 LEU A 96 GLU A 112 ALA A 113 SITE 4 AC1 22 PRO A 139 VAL A 140 GLU A 141 MET A 166 SITE 5 AC1 22 SER A 169 49K A 402 HOH A 554 HOH A 555 SITE 6 AC1 22 HOH A 561 HOH A 638 SITE 1 AC2 10 TYR A 51 VAL A 56 GLU A 59 GLU A 155 SITE 2 AC2 10 MET A 157 TYR A 159 GLU A 164 HIS A 317 SITE 3 AC2 10 SAH A 401 HOH A 564 SITE 1 AC3 23 TYR B 47 TYR B 51 MET B 60 ARG B 66 SITE 2 AC3 23 GLY B 90 ALA B 91 ILE B 95 LEU B 96 SITE 3 AC3 23 GLU B 112 ALA B 113 SER B 114 PRO B 139 SITE 4 AC3 23 VAL B 140 GLU B 141 GLU B 155 MET B 166 SITE 5 AC3 23 SER B 169 49K B 402 HOH B 524 HOH B 527 SITE 6 AC3 23 HOH B 530 HOH B 536 HOH B 553 SITE 1 AC4 11 TYR B 51 VAL B 56 GLU B 59 GLU B 155 SITE 2 AC4 11 MET B 157 TYR B 159 GLU B 164 HIS B 317 SITE 3 AC4 11 TRP B 318 SAH B 401 HOH B 575 SITE 1 AC5 9 LEU B 162 SER B 165 LEU B 344 PRO B 350 SITE 2 AC5 9 ARG B 351 ARG B 352 LEU B 353 HOH B 556 SITE 3 AC5 9 HOH B 577 CRYST1 99.970 99.970 89.490 90.00 90.00 90.00 P 43 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010003 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010003 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011174 0.00000