PDB Short entry for 4Y7A HEADER HYDROLASE 13-FEB-15 4Y7A TITLE FACTOR XA COMPLEX WITH GTC000422 COMPND MOL_ID: 1; COMPND 2 MOLECULE: COAGULATION FACTOR X; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: STUART FACTOR,STUART-PROWER FACTOR, ACTIVATED FACTOR XA COMPND 5 HEAVY CHAIN; COMPND 6 EC: 3.4.21.6; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: COAGULATION FACTOR X; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: UNP RESIDUES 46-179; COMPND 11 SYNONYM: STUART FACTOR,STUART-PROWER FACTOR, FACTOR X LIGHT CHAIN; COMPND 12 EC: 3.4.21.6 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606 KEYWDS HYDROLASE, INHIBITOR EXPDTA X-RAY DIFFRACTION AUTHOR M.A.CONVERY,R.J.YOUNG,S.SENGER,J.N.HAMBLIN,C.CHAN,J.R.TOOMEY, AUTHOR 2 N.S.WATSON REVDAT 2 10-JAN-24 4Y7A 1 COMPND HETNAM LINK REVDAT 1 30-SEP-15 4Y7A 0 JRNL AUTH M.A.CONVERY,R.J.YOUNG,S.SENGER,J.N.HAMBLIN,C.CHAN, JRNL AUTH 2 J.R.TOOMEY,N.S.WATSON JRNL TITL FACTOR XA COMPLEX WITH GTC000422 JRNL REF TO BE PUBLISHED REF NOW ASSIGNED AS JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.CHAN,A.D.BORTHWICK,D.BROWN,C.L.BURNS-KURTIS,M.CAMPBELL, REMARK 1 AUTH 2 L.CHAUDRY,C.W.CHUNG,M.A.CONVERY,J.N.HAMBLIN,L.JOHNSTONE, REMARK 1 AUTH 3 H.A.KELLY,S.KLEANTHOUS,A.PATIKIS,C.PATEL,A.J.PATEMAN, REMARK 1 AUTH 4 S.SENGER,G.P.SHAH,J.R.TOOMEY,N.S.WATSON,H.E.WESTON, REMARK 1 AUTH 5 C.WHITWORTH,R.J.YOUNG,P.ZHOU REMARK 1 TITL FACTOR XA INHIBITORS: S1 BINDING INTERACTIONS OF A SERIES OF REMARK 1 TITL 2 N-{(3S)-1-[(1S) REMARK 1 TITL 3 -1-METHYL-2-MORPHOLIN-4-YL-2-OXOETHYL]-2-OXOPYRROLIDIN-3-YL} REMARK 1 TITL 4 SULFONAMIDES. REMARK 1 REF J. MED. CHEM. V. 50 1546 2007 REMARK 1 REFN ISSN 0022-2623 REMARK 1 PMID 17338508 REMARK 1 DOI 10.1021/JM060870C REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 22389 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1215 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.99 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.04 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1359 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.26 REMARK 3 BIN R VALUE (WORKING SET) : 0.2480 REMARK 3 BIN FREE R VALUE SET COUNT : 68 REMARK 3 BIN FREE R VALUE : 0.2780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2235 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 34 REMARK 3 SOLVENT ATOMS : 215 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : -0.84000 REMARK 3 B33 (A**2) : 0.82000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.173 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.161 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.120 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.340 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2366 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3198 ; 1.349 ; 1.936 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 295 ; 3.509 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 108 ;27.051 ;24.167 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 402 ;10.267 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;15.769 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 341 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1794 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4Y7A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1000206987. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-MAR-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX9.6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23605 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.990 REMARK 200 RESOLUTION RANGE LOW (A) : 26.630 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 1EZQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% PEG 6000, 100 MM MES PH 5.75, 10 REMARK 280 MM CALCIUM CHLORIDE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.58000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.18850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.73850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.18850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.58000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.73850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 245 REMARK 465 GLY A 246 REMARK 465 LEU A 247 REMARK 465 PRO A 248 REMARK 465 LYS A 249 REMARK 465 ALA A 250 REMARK 465 LYS A 251 REMARK 465 SER A 252 REMARK 465 HIS A 253 REMARK 465 ALA A 254 REMARK 465 PRO A 255 REMARK 465 GLU A 256 REMARK 465 VAL A 257 REMARK 465 ILE A 258 REMARK 465 THR A 259 REMARK 465 SER A 260 REMARK 465 SER A 261 REMARK 465 PRO A 262 REMARK 465 LEU A 263 REMARK 465 LYS A 264 REMARK 465 GLU B -82 REMARK 465 GLU B -81 REMARK 465 MET B -80 REMARK 465 LYS B -79 REMARK 465 LYS B -78 REMARK 465 GLY B -77 REMARK 465 HIS B -76 REMARK 465 LEU B -75 REMARK 465 GLU B -74 REMARK 465 ARG B -73 REMARK 465 GLU B -72 REMARK 465 CYS B -71 REMARK 465 MET B -70 REMARK 465 GLU B -69 REMARK 465 GLU B -68 REMARK 465 THR B -67 REMARK 465 CYS B -66 REMARK 465 SER B -65 REMARK 465 TYR B -64 REMARK 465 GLU B -63 REMARK 465 GLU B -62 REMARK 465 ALA B -61 REMARK 465 ARG B -60 REMARK 465 GLU B -59 REMARK 465 VAL B -58 REMARK 465 PHE B -57 REMARK 465 GLU B -56 REMARK 465 ASP B -55 REMARK 465 SER B -54 REMARK 465 ASP B -53 REMARK 465 LYS B -52 REMARK 465 THR B -51 REMARK 465 ASN B -50 REMARK 465 GLU B -49 REMARK 465 PHE B -48 REMARK 465 TRP B -47 REMARK 465 ASN B -46 REMARK 465 LYS B -45 REMARK 465 TYR B -44 REMARK 465 LYS B -43 REMARK 465 ASP B -42 REMARK 465 GLY B -41 REMARK 465 ASP B -40 REMARK 465 GLN B -39 REMARK 465 CYS B -38 REMARK 465 GLU B -37 REMARK 465 THR B -36 REMARK 465 SER B -35 REMARK 465 PRO B -34 REMARK 465 CYS B -33 REMARK 465 GLN B -32 REMARK 465 ASN B -31 REMARK 465 GLN B -30 REMARK 465 GLY B -29 REMARK 465 LYS B -28 REMARK 465 CYS B -27 REMARK 465 LYS B -26 REMARK 465 ASP B -25 REMARK 465 GLY B -24 REMARK 465 LEU B -23 REMARK 465 GLY B -22 REMARK 465 GLU B -21 REMARK 465 TYR B -20 REMARK 465 THR B -19 REMARK 465 CYS B -18 REMARK 465 THR B -17 REMARK 465 CYS B -16 REMARK 465 LEU B -15 REMARK 465 GLU B -14 REMARK 465 GLY B -13 REMARK 465 PHE B -12 REMARK 465 GLU B -11 REMARK 465 GLY B -10 REMARK 465 LYS B -9 REMARK 465 ASN B -8 REMARK 465 CYS B -7 REMARK 465 GLU B -6 REMARK 465 LEU B -5 REMARK 465 PHE B -4 REMARK 465 THR B -3 REMARK 465 ARG B 51 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 244 OG1 CG2 REMARK 470 ARG B -2 CG CD NE CZ NH1 NH2 REMARK 470 LYS B -1 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 514 O HOH A 550 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 214 -66.74 -120.59 REMARK 500 LEU B 0 -130.35 53.04 REMARK 500 GLN B 10 -116.95 -129.09 REMARK 500 LYS B 34 -46.19 -132.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 70 OD1 REMARK 620 2 ASN A 72 O 88.2 REMARK 620 3 GLN A 75 O 156.2 82.0 REMARK 620 4 GLU A 80 OE1 94.9 176.3 95.8 REMARK 620 5 HOH A 459 O 74.1 98.7 128.8 80.3 REMARK 620 6 HOH A 485 O 75.7 95.9 83.7 86.9 145.8 REMARK 620 7 HOH A 518 O 132.4 81.3 67.5 95.1 62.1 151.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 185 O REMARK 620 2 ASP A 185A O 85.8 REMARK 620 3 ARG A 222 O 173.9 88.8 REMARK 620 4 LYS A 224 O 89.5 121.8 95.7 REMARK 620 5 HOH A 526 O 93.8 89.8 83.3 148.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 987 A 303 DBREF 4Y7A A 16 264 UNP P00742 FA10_HUMAN 235 488 DBREF 4Y7A B -82 51 UNP P00742 FA10_HUMAN 46 179 SEQRES 1 A 254 ILE VAL GLY GLY GLN GLU CYS LYS ASP GLY GLU CYS PRO SEQRES 2 A 254 TRP GLN ALA LEU LEU ILE ASN GLU GLU ASN GLU GLY PHE SEQRES 3 A 254 CYS GLY GLY THR ILE LEU SER GLU PHE TYR ILE LEU THR SEQRES 4 A 254 ALA ALA HIS CYS LEU TYR GLN ALA LYS ARG PHE LYS VAL SEQRES 5 A 254 ARG VAL GLY ASP ARG ASN THR GLU GLN GLU GLU GLY GLY SEQRES 6 A 254 GLU ALA VAL HIS GLU VAL GLU VAL VAL ILE LYS HIS ASN SEQRES 7 A 254 ARG PHE THR LYS GLU THR TYR ASP PHE ASP ILE ALA VAL SEQRES 8 A 254 LEU ARG LEU LYS THR PRO ILE THR PHE ARG MET ASN VAL SEQRES 9 A 254 ALA PRO ALA CYS LEU PRO GLU ARG ASP TRP ALA GLU SER SEQRES 10 A 254 THR LEU MET THR GLN LYS THR GLY ILE VAL SER GLY PHE SEQRES 11 A 254 GLY ARG THR HIS GLU LYS GLY ARG GLN SER THR ARG LEU SEQRES 12 A 254 LYS MET LEU GLU VAL PRO TYR VAL ASP ARG ASN SER CYS SEQRES 13 A 254 LYS LEU SER SER SER PHE ILE ILE THR GLN ASN MET PHE SEQRES 14 A 254 CYS ALA GLY TYR ASP THR LYS GLN GLU ASP ALA CYS GLN SEQRES 15 A 254 GLY ASP SER GLY GLY PRO HIS VAL THR ARG PHE LYS ASP SEQRES 16 A 254 THR TYR PHE VAL THR GLY ILE VAL SER TRP GLY GLU GLY SEQRES 17 A 254 CYS ALA ARG LYS GLY LYS TYR GLY ILE TYR THR LYS VAL SEQRES 18 A 254 THR ALA PHE LEU LYS TRP ILE ASP ARG SER MET LYS THR SEQRES 19 A 254 ARG GLY LEU PRO LYS ALA LYS SER HIS ALA PRO GLU VAL SEQRES 20 A 254 ILE THR SER SER PRO LEU LYS SEQRES 1 B 134 GLU GLU MET LYS LYS GLY HIS LEU GLU ARG GLU CYS MET SEQRES 2 B 134 GLU GLU THR CYS SER TYR GLU GLU ALA ARG GLU VAL PHE SEQRES 3 B 134 GLU ASP SER ASP LYS THR ASN GLU PHE TRP ASN LYS TYR SEQRES 4 B 134 LYS ASP GLY ASP GLN CYS GLU THR SER PRO CYS GLN ASN SEQRES 5 B 134 GLN GLY LYS CYS LYS ASP GLY LEU GLY GLU TYR THR CYS SEQRES 6 B 134 THR CYS LEU GLU GLY PHE GLU GLY LYS ASN CYS GLU LEU SEQRES 7 B 134 PHE THR ARG LYS LEU CYS SER LEU ASP ASN GLY ASP CYS SEQRES 8 B 134 ASP GLN PHE CYS HIS GLU GLU GLN ASN SER VAL VAL CYS SEQRES 9 B 134 SER CYS ALA ARG GLY TYR THR LEU ALA ASP ASN GLY LYS SEQRES 10 B 134 ALA CYS ILE PRO THR GLY PRO TYR PRO CYS GLY LYS GLN SEQRES 11 B 134 THR LEU GLU ARG HET CA A 301 1 HET MG A 302 1 HET 987 A 303 32 HETNAM CA CALCIUM ION HETNAM MG MAGNESIUM ION HETNAM 987 N-[(3S)-1-{(2S)-1-[(3S)-3-AMINOPIPERIDIN-1-YL]-1- HETNAM 2 987 OXOPROPAN-2-YL}-2-OXOPYRROLIDIN-3-YL]-6- HETNAM 3 987 CHLORONAPHTHALENE-2-SULFONAMID E HETSYN 987 GTC000422 FORMUL 3 CA CA 2+ FORMUL 4 MG MG 2+ FORMUL 5 987 C22 H27 CL N4 O4 S FORMUL 6 HOH *215(H2 O) HELIX 1 AA1 ALA A 55 GLN A 61 5 7 HELIX 2 AA2 GLU A 124 LEU A 131B 1 9 HELIX 3 AA3 ASP A 164 SER A 172 1 9 HELIX 4 AA4 PHE A 234 MET A 242 1 9 HELIX 5 AA5 LYS B -1 CYS B 8 5 10 SHEET 1 AA1 7 GLN A 20 GLU A 21 0 SHEET 2 AA1 7 LYS A 156 PRO A 161 -1 O MET A 157 N GLN A 20 SHEET 3 AA1 7 THR A 135 GLY A 140 -1 N GLY A 136 O VAL A 160 SHEET 4 AA1 7 PRO A 198 PHE A 203 -1 O VAL A 200 N ILE A 137 SHEET 5 AA1 7 THR A 206 TRP A 215 -1 O THR A 210 N HIS A 199 SHEET 6 AA1 7 GLY A 226 LYS A 230 -1 O ILE A 227 N TRP A 215 SHEET 7 AA1 7 MET A 180 ALA A 183 -1 N PHE A 181 O TYR A 228 SHEET 1 AA2 7 ALA A 81 HIS A 83 0 SHEET 2 AA2 7 LYS A 65 VAL A 68 -1 N VAL A 66 O HIS A 83 SHEET 3 AA2 7 GLN A 30 ILE A 34 -1 N LEU A 32 O ARG A 67 SHEET 4 AA2 7 GLY A 40 ILE A 46 -1 O CYS A 42 N LEU A 33 SHEET 5 AA2 7 TYR A 51 THR A 54 -1 O LEU A 53 N THR A 45 SHEET 6 AA2 7 ALA A 104 LEU A 108 -1 O ALA A 104 N THR A 54 SHEET 7 AA2 7 VAL A 85 LYS A 90 -1 N ILE A 89 O VAL A 105 SHEET 1 AA3 2 PHE B 11 GLU B 14 0 SHEET 2 AA3 2 VAL B 19 SER B 22 -1 O VAL B 20 N HIS B 13 SHEET 1 AA4 2 TYR B 27 LEU B 29 0 SHEET 2 AA4 2 CYS B 36 PRO B 38 -1 O ILE B 37 N THR B 28 SSBOND 1 CYS A 22 CYS A 27 1555 1555 2.04 SSBOND 2 CYS A 42 CYS A 58 1555 1555 2.04 SSBOND 3 CYS A 122 CYS B 44 1555 1555 2.05 SSBOND 4 CYS A 168 CYS A 182 1555 1555 2.00 SSBOND 5 CYS A 191 CYS A 220 1555 1555 2.04 SSBOND 6 CYS B 1 CYS B 12 1555 1555 2.07 SSBOND 7 CYS B 8 CYS B 21 1555 1555 2.03 SSBOND 8 CYS B 23 CYS B 36 1555 1555 2.04 LINK OD1 ASP A 70 CA CA A 301 1555 1555 2.33 LINK O ASN A 72 CA CA A 301 1555 1555 2.31 LINK O GLN A 75 CA CA A 301 1555 1555 2.32 LINK OE1 GLU A 80 CA CA A 301 1555 1555 2.32 LINK O TYR A 185 MG MG A 302 1555 1555 2.19 LINK O ASP A 185A MG MG A 302 1555 1555 2.21 LINK O ARG A 222 MG MG A 302 1555 1555 2.20 LINK O LYS A 224 MG MG A 302 1555 1555 2.19 LINK CA CA A 301 O HOH A 459 1555 1555 2.45 LINK CA CA A 301 O HOH A 485 1555 1555 2.23 LINK CA CA A 301 O HOH A 518 1555 1555 2.73 LINK MG MG A 302 O HOH A 526 1555 1555 2.39 SITE 1 AC1 7 ASP A 70 ASN A 72 GLN A 75 GLU A 80 SITE 2 AC1 7 HOH A 459 HOH A 485 HOH A 518 SITE 1 AC2 5 TYR A 185 ASP A 185A ARG A 222 LYS A 224 SITE 2 AC2 5 HOH A 526 SITE 1 AC3 16 LYS A 96 GLU A 97 PHE A 174 ASP A 189 SITE 2 AC3 16 ALA A 190 GLN A 192 SER A 195 VAL A 213 SITE 3 AC3 16 TRP A 215 GLY A 216 GLY A 219 GLY A 226 SITE 4 AC3 16 ILE A 227 TYR A 228 HOH A 515 HOH A 551 CRYST1 57.160 73.477 80.377 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017495 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013610 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012441 0.00000