PDB Short entry for 4Y7R HEADER DNA BINDING PROTEIN 16-FEB-15 4Y7R TITLE CRYSTAL STRUCTURE OF WDR5 IN COMPLEX WITH MYC MBIIIB PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: WD REPEAT-CONTAINING PROTEIN 5; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BMP2-INDUCED 3-KB GENE PROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: MYC MBIIIB PEPTIDE; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: WDR5, BIG3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-RIL; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 12 ORGANISM_TAXID: 32630 KEYWDS MYC WDR5 CANCER, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Q.SUN,J.PHAN,E.T.OLEJNICZAK,L.R.THOMAS,S.W.FESIK,W.P.TANSEY REVDAT 4 27-SEP-23 4Y7R 1 REMARK REVDAT 3 20-SEP-17 4Y7R 1 SOURCE JRNL REMARK REVDAT 2 20-MAY-15 4Y7R 1 JRNL REVDAT 1 15-APR-15 4Y7R 0 JRNL AUTH L.R.THOMAS,Q.WANG,B.C.GRIEB,J.PHAN,A.M.FOSHAGE,Q.SUN, JRNL AUTH 2 E.T.OLEJNICZAK,T.CLARK,S.DEY,S.LOREY,B.ALICIE,G.C.HOWARD, JRNL AUTH 3 B.CAWTHON,K.C.ESS,C.M.EISCHEN,Z.ZHAO,S.W.FESIK,W.P.TANSEY JRNL TITL INTERACTION WITH WDR5 PROMOTES TARGET GENE RECOGNITION AND JRNL TITL 2 TUMORIGENESIS BY MYC. JRNL REF MOL.CELL V. 58 440 2015 JRNL REFN ISSN 1097-2765 JRNL PMID 25818646 JRNL DOI 10.1016/J.MOLCEL.2015.02.028 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_1951) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.59 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 25709 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 1275 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.6000 - 3.9480 0.99 2886 152 0.1451 0.1640 REMARK 3 2 3.9480 - 3.1339 1.00 2751 145 0.1490 0.1887 REMARK 3 3 3.1339 - 2.7378 1.00 2731 142 0.1671 0.1855 REMARK 3 4 2.7378 - 2.4875 1.00 2687 141 0.1645 0.1858 REMARK 3 5 2.4875 - 2.3092 1.00 2690 145 0.1670 0.2032 REMARK 3 6 2.3092 - 2.1731 1.00 2696 134 0.1647 0.1995 REMARK 3 7 2.1731 - 2.0643 1.00 2673 148 0.1771 0.2176 REMARK 3 8 2.0643 - 1.9744 1.00 2675 138 0.1901 0.2582 REMARK 3 9 1.9744 - 1.8984 0.99 2645 130 0.2212 0.2847 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.170 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 2539 REMARK 3 ANGLE : 0.958 3452 REMARK 3 CHIRALITY : 0.048 390 REMARK 3 PLANARITY : 0.004 430 REMARK 3 DIHEDRAL : 11.803 904 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 31 THROUGH 53 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.0398 20.1871 9.2030 REMARK 3 T TENSOR REMARK 3 T11: 0.2879 T22: 0.2571 REMARK 3 T33: 0.3623 T12: 0.0092 REMARK 3 T13: 0.0184 T23: 0.0234 REMARK 3 L TENSOR REMARK 3 L11: 2.7443 L22: 1.3692 REMARK 3 L33: 1.5301 L12: -0.7100 REMARK 3 L13: -0.4575 L23: 0.5394 REMARK 3 S TENSOR REMARK 3 S11: -0.1534 S12: -0.0561 S13: -0.4539 REMARK 3 S21: 0.1932 S22: -0.1574 S23: 0.1622 REMARK 3 S31: 0.1585 S32: -0.1185 S33: 0.1883 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 54 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.0749 31.0301 12.6891 REMARK 3 T TENSOR REMARK 3 T11: 0.2313 T22: 0.2155 REMARK 3 T33: 0.2227 T12: 0.0266 REMARK 3 T13: 0.0148 T23: 0.0104 REMARK 3 L TENSOR REMARK 3 L11: 2.4305 L22: 1.6592 REMARK 3 L33: 1.8048 L12: -0.2613 REMARK 3 L13: 0.4082 L23: 0.2458 REMARK 3 S TENSOR REMARK 3 S11: 0.0134 S12: -0.1744 S13: 0.1236 REMARK 3 S21: 0.0968 S22: 0.0255 S23: 0.2418 REMARK 3 S31: 0.1385 S32: -0.0462 S33: -0.0382 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 84 THROUGH 106 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.6336 35.2811 9.6752 REMARK 3 T TENSOR REMARK 3 T11: 0.2139 T22: 0.2360 REMARK 3 T33: 0.2835 T12: 0.0493 REMARK 3 T13: -0.0029 T23: 0.0251 REMARK 3 L TENSOR REMARK 3 L11: 1.5817 L22: 1.2606 REMARK 3 L33: 2.2208 L12: 0.3716 REMARK 3 L13: 0.0477 L23: 0.4077 REMARK 3 S TENSOR REMARK 3 S11: 0.0118 S12: -0.0943 S13: 0.3494 REMARK 3 S21: -0.1021 S22: 0.0456 S23: 0.1044 REMARK 3 S31: -0.1644 S32: 0.0077 S33: -0.0421 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 107 THROUGH 148 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.3050 37.3425 8.1262 REMARK 3 T TENSOR REMARK 3 T11: 0.2271 T22: 0.2101 REMARK 3 T33: 0.2771 T12: 0.0082 REMARK 3 T13: -0.0009 T23: -0.0009 REMARK 3 L TENSOR REMARK 3 L11: 2.7880 L22: 2.1048 REMARK 3 L33: 1.3581 L12: -0.4977 REMARK 3 L13: -0.6358 L23: 0.7718 REMARK 3 S TENSOR REMARK 3 S11: -0.0059 S12: -0.1302 S13: 0.4086 REMARK 3 S21: -0.0607 S22: 0.0676 S23: -0.0290 REMARK 3 S31: -0.1760 S32: 0.1164 S33: -0.0591 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 149 THROUGH 167 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.2347 37.3280 6.2489 REMARK 3 T TENSOR REMARK 3 T11: 0.2567 T22: 0.3018 REMARK 3 T33: 0.3707 T12: -0.0313 REMARK 3 T13: -0.0019 T23: -0.0419 REMARK 3 L TENSOR REMARK 3 L11: 2.9070 L22: 2.8747 REMARK 3 L33: 2.8951 L12: -0.7572 REMARK 3 L13: -1.1116 L23: 0.4313 REMARK 3 S TENSOR REMARK 3 S11: 0.1513 S12: -0.2174 S13: 0.7213 REMARK 3 S21: 0.1730 S22: 0.1453 S23: -0.2810 REMARK 3 S31: -0.0829 S32: 0.1759 S33: -0.2970 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 168 THROUGH 209 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.3978 24.8884 7.3087 REMARK 3 T TENSOR REMARK 3 T11: 0.2328 T22: 0.3557 REMARK 3 T33: 0.2645 T12: 0.0369 REMARK 3 T13: -0.0263 T23: -0.0037 REMARK 3 L TENSOR REMARK 3 L11: 2.5746 L22: 2.1254 REMARK 3 L33: 1.8221 L12: -0.5488 REMARK 3 L13: -0.5097 L23: 0.4782 REMARK 3 S TENSOR REMARK 3 S11: -0.1385 S12: -0.3469 S13: -0.1335 REMARK 3 S21: 0.2129 S22: 0.2170 S23: -0.2593 REMARK 3 S31: 0.0641 S32: 0.3028 S33: -0.0991 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 210 THROUGH 233 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.6970 15.5270 6.8323 REMARK 3 T TENSOR REMARK 3 T11: 0.3062 T22: 0.3463 REMARK 3 T33: 0.3730 T12: 0.0523 REMARK 3 T13: 0.0394 T23: 0.0302 REMARK 3 L TENSOR REMARK 3 L11: 2.3051 L22: 2.2237 REMARK 3 L33: 2.7623 L12: -0.0501 REMARK 3 L13: 0.3848 L23: -0.8454 REMARK 3 S TENSOR REMARK 3 S11: -0.1630 S12: -0.1416 S13: -0.5889 REMARK 3 S21: 0.1156 S22: 0.1180 S23: -0.2806 REMARK 3 S31: 0.2929 S32: 0.0970 S33: 0.0422 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 234 THROUGH 252 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.4957 10.1625 7.1088 REMARK 3 T TENSOR REMARK 3 T11: 0.3822 T22: 0.4232 REMARK 3 T33: 0.6503 T12: 0.1459 REMARK 3 T13: 0.0453 T23: 0.0292 REMARK 3 L TENSOR REMARK 3 L11: 1.9852 L22: 1.9014 REMARK 3 L33: 1.5248 L12: 0.8482 REMARK 3 L13: 0.6127 L23: 0.0855 REMARK 3 S TENSOR REMARK 3 S11: -0.1408 S12: -0.1551 S13: -0.9947 REMARK 3 S21: 0.2183 S22: 0.0804 S23: -0.4934 REMARK 3 S31: 0.2791 S32: 0.3528 S33: 0.0272 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 253 THROUGH 282 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.0989 13.3378 5.2362 REMARK 3 T TENSOR REMARK 3 T11: 0.2979 T22: 0.2492 REMARK 3 T33: 0.3450 T12: 0.0223 REMARK 3 T13: 0.0418 T23: 0.0033 REMARK 3 L TENSOR REMARK 3 L11: 3.0679 L22: 2.1329 REMARK 3 L33: 1.5501 L12: -0.2688 REMARK 3 L13: -0.4573 L23: 0.4252 REMARK 3 S TENSOR REMARK 3 S11: -0.1858 S12: 0.0905 S13: -0.5899 REMARK 3 S21: 0.1276 S22: 0.0830 S23: 0.0386 REMARK 3 S31: 0.3347 S32: 0.3105 S33: 0.1409 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 283 THROUGH 303 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.2812 8.1614 6.8553 REMARK 3 T TENSOR REMARK 3 T11: 0.3661 T22: 0.2276 REMARK 3 T33: 0.5435 T12: 0.0164 REMARK 3 T13: 0.0692 T23: 0.0081 REMARK 3 L TENSOR REMARK 3 L11: 1.8543 L22: 0.7127 REMARK 3 L33: 1.4813 L12: -0.7509 REMARK 3 L13: -0.1202 L23: -0.0567 REMARK 3 S TENSOR REMARK 3 S11: -0.1922 S12: 0.0199 S13: -0.7033 REMARK 3 S21: 0.1439 S22: -0.0929 S23: -0.1330 REMARK 3 S31: 0.5796 S32: 0.0530 S33: 0.2891 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 304 THROUGH 334 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.5110 18.6744 10.1847 REMARK 3 T TENSOR REMARK 3 T11: 0.2285 T22: 0.1845 REMARK 3 T33: 0.2575 T12: 0.0055 REMARK 3 T13: 0.0564 T23: 0.0322 REMARK 3 L TENSOR REMARK 3 L11: 2.8202 L22: 1.9071 REMARK 3 L33: 1.2511 L12: 0.2681 REMARK 3 L13: -0.1444 L23: 1.2622 REMARK 3 S TENSOR REMARK 3 S11: -0.1749 S12: -0.1094 S13: -0.3961 REMARK 3 S21: 0.2849 S22: 0.0699 S23: 0.1575 REMARK 3 S31: 0.2964 S32: -0.1041 S33: 0.0529 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 260 THROUGH 267 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.0471 8.5109 21.0210 REMARK 3 T TENSOR REMARK 3 T11: 0.6242 T22: 0.7709 REMARK 3 T33: 0.4674 T12: 0.1431 REMARK 3 T13: -0.0265 T23: 0.2238 REMARK 3 L TENSOR REMARK 3 L11: 5.3837 L22: 5.3419 REMARK 3 L33: 5.4049 L12: -2.1214 REMARK 3 L13: -1.7105 L23: 0.8424 REMARK 3 S TENSOR REMARK 3 S11: -0.1882 S12: -0.3007 S13: -0.3119 REMARK 3 S21: 0.1964 S22: 0.0940 S23: -0.3816 REMARK 3 S31: 0.7069 S32: 0.1300 S33: 0.1076 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4Y7R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1000207018. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25709 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.898 REMARK 200 RESOLUTION RANGE LOW (A) : 43.589 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 9.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 24.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.40 REMARK 200 R MERGE FOR SHELL (I) : 0.67000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2XL2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS 7.0, 25% PEG 8K, PH 7, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 40.38100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.58850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.38100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.58850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 22 REMARK 465 ALA A 23 REMARK 465 THR A 24 REMARK 465 GLN A 25 REMARK 465 SER A 26 REMARK 465 LYS A 27 REMARK 465 PRO A 28 REMARK 465 THR A 29 REMARK 465 PRO A 30 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP B 263 OG SER B 266 1.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 234 36.71 -81.52 REMARK 500 LYS A 259 -43.79 -131.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 402 DBREF 4Y7R A 22 334 UNP P61964 WDR5_HUMAN 22 334 DBREF 4Y7R B 260 267 PDB 4Y7R 4Y7R 260 267 SEQRES 1 A 313 SER ALA THR GLN SER LYS PRO THR PRO VAL LYS PRO ASN SEQRES 2 A 313 TYR ALA LEU LYS PHE THR LEU ALA GLY HIS THR LYS ALA SEQRES 3 A 313 VAL SER SER VAL LYS PHE SER PRO ASN GLY GLU TRP LEU SEQRES 4 A 313 ALA SER SER SER ALA ASP LYS LEU ILE LYS ILE TRP GLY SEQRES 5 A 313 ALA TYR ASP GLY LYS PHE GLU LYS THR ILE SER GLY HIS SEQRES 6 A 313 LYS LEU GLY ILE SER ASP VAL ALA TRP SER SER ASP SER SEQRES 7 A 313 ASN LEU LEU VAL SER ALA SER ASP ASP LYS THR LEU LYS SEQRES 8 A 313 ILE TRP ASP VAL SER SER GLY LYS CYS LEU LYS THR LEU SEQRES 9 A 313 LYS GLY HIS SER ASN TYR VAL PHE CYS CYS ASN PHE ASN SEQRES 10 A 313 PRO GLN SER ASN LEU ILE VAL SER GLY SER PHE ASP GLU SEQRES 11 A 313 SER VAL ARG ILE TRP ASP VAL LYS THR GLY LYS CYS LEU SEQRES 12 A 313 LYS THR LEU PRO ALA HIS SER ASP PRO VAL SER ALA VAL SEQRES 13 A 313 HIS PHE ASN ARG ASP GLY SER LEU ILE VAL SER SER SER SEQRES 14 A 313 TYR ASP GLY LEU CYS ARG ILE TRP ASP THR ALA SER GLY SEQRES 15 A 313 GLN CYS LEU LYS THR LEU ILE ASP ASP ASP ASN PRO PRO SEQRES 16 A 313 VAL SER PHE VAL LYS PHE SER PRO ASN GLY LYS TYR ILE SEQRES 17 A 313 LEU ALA ALA THR LEU ASP ASN THR LEU LYS LEU TRP ASP SEQRES 18 A 313 TYR SER LYS GLY LYS CYS LEU LYS THR TYR THR GLY HIS SEQRES 19 A 313 LYS ASN GLU LYS TYR CYS ILE PHE ALA ASN PHE SER VAL SEQRES 20 A 313 THR GLY GLY LYS TRP ILE VAL SER GLY SER GLU ASP ASN SEQRES 21 A 313 LEU VAL TYR ILE TRP ASN LEU GLN THR LYS GLU ILE VAL SEQRES 22 A 313 GLN LYS LEU GLN GLY HIS THR ASP VAL VAL ILE SER THR SEQRES 23 A 313 ALA CYS HIS PRO THR GLU ASN ILE ILE ALA SER ALA ALA SEQRES 24 A 313 LEU GLU ASN ASP LYS THR ILE LYS LEU TRP LYS SER ASP SEQRES 25 A 313 CYS SEQRES 1 B 8 GLU GLU ILE ASP VAL VAL SER VAL HET TRS A 401 8 HET EDO A 402 4 HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM EDO 1,2-ETHANEDIOL HETSYN TRS TRIS BUFFER HETSYN EDO ETHYLENE GLYCOL FORMUL 3 TRS C4 H12 N O3 1+ FORMUL 4 EDO C2 H6 O2 FORMUL 5 HOH *179(H2 O) SHEET 1 AA1 4 ALA A 36 LEU A 41 0 SHEET 2 AA1 4 ILE A 327 LYS A 331 -1 O ILE A 327 N LEU A 41 SHEET 3 AA1 4 ILE A 315 ALA A 320 -1 N ILE A 316 O TRP A 330 SHEET 4 AA1 4 VAL A 304 CYS A 309 -1 N ALA A 308 O ALA A 317 SHEET 1 AA2 4 VAL A 48 PHE A 53 0 SHEET 2 AA2 4 TRP A 59 SER A 64 -1 O SER A 63 N SER A 49 SHEET 3 AA2 4 ILE A 69 GLY A 73 -1 O TRP A 72 N LEU A 60 SHEET 4 AA2 4 PHE A 79 ILE A 83 -1 O ILE A 83 N ILE A 69 SHEET 1 AA3 4 ILE A 90 TRP A 95 0 SHEET 2 AA3 4 LEU A 101 SER A 106 -1 O ALA A 105 N SER A 91 SHEET 3 AA3 4 LEU A 111 ASP A 115 -1 O TRP A 114 N LEU A 102 SHEET 4 AA3 4 CYS A 121 LEU A 125 -1 O LEU A 125 N LEU A 111 SHEET 1 AA4 4 VAL A 132 PHE A 137 0 SHEET 2 AA4 4 LEU A 143 SER A 148 -1 O VAL A 145 N ASN A 136 SHEET 3 AA4 4 VAL A 153 ASP A 157 -1 O TRP A 156 N ILE A 144 SHEET 4 AA4 4 CYS A 163 LEU A 167 -1 O LEU A 167 N VAL A 153 SHEET 1 AA5 4 VAL A 174 PHE A 179 0 SHEET 2 AA5 4 LEU A 185 SER A 190 -1 O VAL A 187 N HIS A 178 SHEET 3 AA5 4 CYS A 195 ASP A 199 -1 O TRP A 198 N ILE A 186 SHEET 4 AA5 4 CYS A 205 LEU A 209 -1 O LEU A 206 N ILE A 197 SHEET 1 AA6 4 VAL A 217 PHE A 222 0 SHEET 2 AA6 4 TYR A 228 THR A 233 -1 O LEU A 230 N LYS A 221 SHEET 3 AA6 4 THR A 237 ASP A 242 -1 O TRP A 241 N ILE A 229 SHEET 4 AA6 4 LYS A 247 TYR A 252 -1 O LYS A 247 N ASP A 242 SHEET 1 AA7 4 ALA A 264 SER A 267 0 SHEET 2 AA7 4 TRP A 273 SER A 276 -1 O TRP A 273 N SER A 267 SHEET 3 AA7 4 VAL A 283 ASN A 287 -1 O TYR A 284 N SER A 276 SHEET 4 AA7 4 ILE A 293 LEU A 297 -1 O VAL A 294 N ILE A 285 SITE 1 AC1 9 SER A 49 SER A 91 PHE A 133 CYS A 261 SITE 2 AC1 9 PHE A 263 ILE A 305 HOH A 545 HOH A 564 SITE 3 AC1 9 HOH A 599 SITE 1 AC2 2 TYR A 260 ASP A 302 CRYST1 80.762 87.177 44.914 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012382 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011471 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022265 0.00000