PDB Short entry for 4Y88 HEADER CELL ADHESION 16-FEB-15 4Y88 TITLE CRYSTAL STRUCTURE OF THE N-TERMINAL DOMAIN OF CEACAM8 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CARCINOEMBRYONIC ANTIGEN-RELATED CELL ADHESION MOLECULE 8; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: IGV DOMAIN (UNP RESIDUES 34-141); COMPND 5 SYNONYM: CD67 ANTIGEN,CARCINOEMBRYONIC ANTIGEN CGM6,NON-SPECIFIC COMPND 6 CROSS-REACTING ANTIGEN NCA-95; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CEACAM8, CGM6; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR D.A.BONSOR,E.J.SUNDBERG REVDAT 4 27-SEP-23 4Y88 1 JRNL REMARK REVDAT 3 11-NOV-15 4Y88 1 JRNL REVDAT 2 04-NOV-15 4Y88 1 JRNL REVDAT 1 07-OCT-15 4Y88 0 JRNL AUTH D.A.BONSOR,S.GUNTHER,R.BEADENKOPF,D.BECKETT,E.J.SUNDBERG JRNL TITL DIVERSE OLIGOMERIC STATES OF CEACAM IGV DOMAINS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 112 13561 2015 JRNL REFN ESSN 1091-6490 JRNL PMID 26483485 JRNL DOI 10.1073/PNAS.1509511112 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 66.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 24772 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.147 REMARK 3 R VALUE (WORKING SET) : 0.145 REMARK 3 FREE R VALUE : 0.180 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1250 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.49 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1778 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.73 REMARK 3 BIN R VALUE (WORKING SET) : 0.2550 REMARK 3 BIN FREE R VALUE SET COUNT : 95 REMARK 3 BIN FREE R VALUE : 0.2910 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 850 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 111 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.055 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.054 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.038 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.255 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.976 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.970 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 925 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 877 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1262 ; 1.505 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2014 ; 0.773 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 116 ; 7.005 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 45 ;33.697 ;24.889 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 152 ;12.252 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;18.828 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 144 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1058 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 214 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 444 ; 1.580 ; 1.747 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 443 ; 1.565 ; 1.743 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 556 ; 1.988 ; 2.625 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 1799 ; 2.652 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 39 ;35.083 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 1859 ;11.810 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4Y88 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1000206984. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-DEC-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 3.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03317 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26074 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 66.710 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 48.90 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.13500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 27.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.47 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 49.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2QSQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.2M AMMMONIUM SULPHATE, 0.1M CITRIC REMARK 280 ACID, PH 3.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+3/4,X+1/4,-Z+1/4 REMARK 290 14555 -Y+3/4,-X+3/4,-Z+3/4 REMARK 290 15555 Y+1/4,-X+1/4,Z+3/4 REMARK 290 16555 -Y+1/4,X+3/4,Z+1/4 REMARK 290 17555 X+3/4,Z+1/4,-Y+1/4 REMARK 290 18555 -X+1/4,Z+3/4,Y+1/4 REMARK 290 19555 -X+3/4,-Z+3/4,-Y+3/4 REMARK 290 20555 X+1/4,-Z+1/4,Y+3/4 REMARK 290 21555 Z+3/4,Y+1/4,-X+1/4 REMARK 290 22555 Z+1/4,-Y+1/4,X+3/4 REMARK 290 23555 -Z+1/4,Y+3/4,X+1/4 REMARK 290 24555 -Z+3/4,-Y+3/4,-X+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 47.16800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.16800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.16800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.16800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 47.16800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.16800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 47.16800 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 47.16800 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 47.16800 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 47.16800 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 47.16800 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 47.16800 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 47.16800 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 47.16800 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 47.16800 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 47.16800 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 47.16800 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 47.16800 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 70.75200 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 23.58400 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 23.58400 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 70.75200 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 70.75200 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 70.75200 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 23.58400 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 23.58400 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 70.75200 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 23.58400 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 70.75200 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 23.58400 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 70.75200 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 23.58400 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 23.58400 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 23.58400 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 70.75200 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 23.58400 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 70.75200 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 70.75200 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 70.75200 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 23.58400 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 23.58400 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 70.75200 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 70.75200 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 23.58400 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 23.58400 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 23.58400 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 23.58400 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 70.75200 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 23.58400 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 70.75200 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 23.58400 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 70.75200 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 70.75200 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 70.75200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 307 O HOH A 342 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O1 GOL A 202 O1 GOL A 202 18545 1.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 72 -7.95 83.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PDO A 207 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4Y89 RELATED DB: PDB REMARK 900 RELATED ID: 4Y8A RELATED DB: PDB REMARK 900 RELATED ID: 4Y8B RELATED DB: PDB DBREF 4Y88 A 1 108 UNP P31997 CEAM8_HUMAN 34 141 SEQRES 1 A 108 ALA GLN LEU THR ILE GLU ALA VAL PRO SER ASN ALA ALA SEQRES 2 A 108 GLU GLY LYS GLU VAL LEU LEU LEU VAL HIS ASN LEU PRO SEQRES 3 A 108 GLN ASP PRO ARG GLY TYR ASN TRP TYR LYS GLY GLU THR SEQRES 4 A 108 VAL ASP ALA ASN ARG ARG ILE ILE GLY TYR VAL ILE SER SEQRES 5 A 108 ASN GLN GLN ILE THR PRO GLY PRO ALA TYR SER ASN ARG SEQRES 6 A 108 GLU THR ILE TYR PRO ASN ALA SER LEU LEU MET ARG ASN SEQRES 7 A 108 VAL THR ARG ASN ASP THR GLY SER TYR THR LEU GLN VAL SEQRES 8 A 108 ILE LYS LEU ASN LEU MET SER GLU GLU VAL THR GLY GLN SEQRES 9 A 108 PHE SER VAL HIS HET SO4 A 201 5 HET GOL A 202 6 HET GOL A 203 6 HET CL A 204 1 HET CL A 205 1 HET SO4 A 206 5 HET PDO A 207 5 HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETNAM PDO 1,3-PROPANDIOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 SO4 2(O4 S 2-) FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 CL 2(CL 1-) FORMUL 8 PDO C3 H8 O2 FORMUL 9 HOH *111(H2 O) HELIX 1 AA1 ASP A 41 ASN A 43 5 3 HELIX 2 AA2 THR A 80 THR A 84 5 5 SHEET 1 AA1 4 THR A 4 VAL A 8 0 SHEET 2 AA1 4 VAL A 18 HIS A 23 -1 O LEU A 19 N VAL A 8 SHEET 3 AA1 4 LEU A 74 MET A 76 -1 O LEU A 74 N LEU A 20 SHEET 4 AA1 4 GLU A 66 ILE A 68 -1 N THR A 67 O LEU A 75 SHEET 1 AA2 6 ASN A 11 ALA A 13 0 SHEET 2 AA2 6 SER A 98 HIS A 108 1 O SER A 106 N ALA A 12 SHEET 3 AA2 6 GLY A 85 ILE A 92 -1 N VAL A 91 O GLU A 99 SHEET 4 AA2 6 GLY A 31 LYS A 36 -1 N ASN A 33 O GLN A 90 SHEET 5 AA2 6 ARG A 45 VAL A 50 -1 O ILE A 47 N TRP A 34 SHEET 6 AA2 6 GLN A 55 PRO A 58 -1 O GLN A 55 N VAL A 50 CISPEP 1 VAL A 8 PRO A 9 0 -10.81 SITE 1 AC1 7 HIS A 23 ASN A 24 HOH A 309 HOH A 331 SITE 2 AC1 7 HOH A 335 HOH A 350 HOH A 364 SITE 1 AC2 6 GLU A 17 ARG A 30 ARG A 77 GOL A 203 SITE 2 AC2 6 HOH A 301 HOH A 303 SITE 1 AC3 4 THR A 67 PRO A 70 GOL A 202 HOH A 359 SITE 1 AC4 1 LYS A 36 SITE 1 AC5 4 GLY A 103 GLN A 104 HOH A 326 HOH A 381 SITE 1 AC6 6 SER A 10 ARG A 45 PRO A 60 HOH A 305 SITE 2 AC6 6 HOH A 334 HOH A 363 SITE 1 AC7 3 SER A 63 ASN A 64 ARG A 65 CRYST1 94.336 94.336 94.336 90.00 90.00 90.00 P 41 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010600 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010600 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010600 0.00000