PDB Short entry for 4YCM HEADER HYDROLASE 20-FEB-15 4YCM TITLE CRYSTAL STRUCTURE OF THE CALCIUM PUMP WITH BOUND MARINE MACROLIDE BLS COMPND MOL_ID: 1; COMPND 2 MOLECULE: SARCOPLASMIC/ENDOPLASMIC RETICULUM CALCIUM ATPASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SR CA(2+)-ATPASE 1,CALCIUM PUMP 1,CALCIUM-TRANSPORTING COMPND 5 ATPASE SARCOPLASMIC RETICULUM TYPE,FAST TWITCH SKELETAL MUSCLE COMPND 6 ISOFORM,ENDOPLASMIC RETICULUM CLASS 1/2 CA(2+) ATPASE; COMPND 7 EC: 3.6.3.8 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 3 ORGANISM_COMMON: RABBIT; SOURCE 4 ORGANISM_TAXID: 9986 KEYWDS MEMBRANE PROTEIN, P-TYPE ATPASE, HAD FOLD, CA2+, ION PUMP, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.MORITA,H.OGAWA,O.OHNO,T.YAMORI,K.SUENAGA,C.TOYOSHIMA REVDAT 2 05-FEB-20 4YCM 1 JRNL REMARK REVDAT 1 13-JAN-16 4YCM 0 JRNL AUTH M.MORITA,H.OGAWA,O.OHNO,T.YAMORI,K.SUENAGA,C.TOYOSHIMA JRNL TITL BISELYNGBYASIDES, CYTOTOXIC MARINE MACROLIDES, ARE NOVEL AND JRNL TITL 2 POTENT INHIBITORS OF THE CA(2+) PUMPS WITH A UNIQUE MODE OF JRNL TITL 3 BINDING JRNL REF FEBS LETT. V. 589 1406 2015 JRNL REFN ISSN 0014-5793 JRNL PMID 25957767 JRNL DOI 10.1016/J.FEBSLET.2015.04.056 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.97 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 3.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 3 NUMBER OF REFLECTIONS : 24969 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.180 REMARK 3 FREE R VALUE TEST SET COUNT : 795 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 15.9714 - 5.7389 0.99 4516 152 0.1805 0.2401 REMARK 3 2 5.7389 - 4.5908 0.99 4272 135 0.2068 0.2481 REMARK 3 3 4.5908 - 4.0211 0.99 4183 146 0.2107 0.2527 REMARK 3 4 4.0211 - 3.6582 0.96 4067 129 0.2414 0.2616 REMARK 3 5 3.6582 - 3.3987 0.92 3769 139 0.2654 0.3362 REMARK 3 6 3.3987 - 3.2000 0.80 3367 94 0.2715 0.2695 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.400 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.001 7904 REMARK 3 ANGLE : 0.433 10713 REMARK 3 CHIRALITY : 0.017 1248 REMARK 3 PLANARITY : 0.002 1361 REMARK 3 DIHEDRAL : 9.917 2925 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 77 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.1956 -14.7653 39.2321 REMARK 3 T TENSOR REMARK 3 T11: 0.2348 T22: 0.5541 REMARK 3 T33: 0.3451 T12: 0.1175 REMARK 3 T13: -0.0293 T23: 0.0449 REMARK 3 L TENSOR REMARK 3 L11: 0.3462 L22: 0.5652 REMARK 3 L33: 0.2991 L12: 0.1296 REMARK 3 L13: -0.0370 L23: -0.2748 REMARK 3 S TENSOR REMARK 3 S11: -0.0179 S12: -0.1107 S13: 0.0665 REMARK 3 S21: -0.1444 S22: -0.0832 S23: 0.2058 REMARK 3 S31: 0.3377 S32: -0.1150 S33: -0.1898 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 78 THROUGH 130 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.4115 -8.1450 57.7025 REMARK 3 T TENSOR REMARK 3 T11: 0.2562 T22: 0.7021 REMARK 3 T33: 0.2601 T12: 0.1615 REMARK 3 T13: -0.0563 T23: 0.0483 REMARK 3 L TENSOR REMARK 3 L11: 0.1361 L22: 0.1576 REMARK 3 L33: 0.0572 L12: 0.0818 REMARK 3 L13: -0.0579 L23: 0.0906 REMARK 3 S TENSOR REMARK 3 S11: 0.1260 S12: -0.2435 S13: 0.2210 REMARK 3 S21: 0.1498 S22: -0.0456 S23: 0.0382 REMARK 3 S31: -0.1822 S32: -0.3468 S33: 0.0502 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 131 THROUGH 306 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.9914 -13.7691 38.3598 REMARK 3 T TENSOR REMARK 3 T11: 0.1780 T22: 0.2135 REMARK 3 T33: 0.3394 T12: 0.0384 REMARK 3 T13: -0.0245 T23: 0.1037 REMARK 3 L TENSOR REMARK 3 L11: 0.3753 L22: 0.3124 REMARK 3 L33: 0.4518 L12: 0.0998 REMARK 3 L13: 0.1545 L23: 0.3112 REMARK 3 S TENSOR REMARK 3 S11: -0.0002 S12: -0.1407 S13: 0.1097 REMARK 3 S21: -0.0885 S22: -0.0414 S23: 0.1403 REMARK 3 S31: 0.0948 S32: -0.0356 S33: -0.0521 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 307 THROUGH 439 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.0495 3.1648 19.5240 REMARK 3 T TENSOR REMARK 3 T11: 0.3232 T22: 0.4369 REMARK 3 T33: 0.3877 T12: -0.0615 REMARK 3 T13: -0.0794 T23: 0.0957 REMARK 3 L TENSOR REMARK 3 L11: 0.4932 L22: 0.2115 REMARK 3 L33: 0.4025 L12: 0.0285 REMARK 3 L13: 0.3026 L23: -0.3076 REMARK 3 S TENSOR REMARK 3 S11: -0.0326 S12: 0.0774 S13: 0.1781 REMARK 3 S21: 0.1512 S22: 0.0259 S23: 0.0229 REMARK 3 S31: -0.3526 S32: 0.0096 S33: 0.0016 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 440 THROUGH 509 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.6026 14.0421 1.5937 REMARK 3 T TENSOR REMARK 3 T11: 0.3847 T22: 0.3419 REMARK 3 T33: 0.6464 T12: -0.0304 REMARK 3 T13: -0.0820 T23: 0.1738 REMARK 3 L TENSOR REMARK 3 L11: 0.1602 L22: 0.0402 REMARK 3 L33: 0.1234 L12: -0.0777 REMARK 3 L13: 0.0080 L23: -0.0320 REMARK 3 S TENSOR REMARK 3 S11: 0.0419 S12: -0.1093 S13: 0.4182 REMARK 3 S21: 0.1399 S22: -0.0685 S23: 0.2457 REMARK 3 S31: -0.2175 S32: -0.2047 S33: -0.0001 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 510 THROUGH 831 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.9712 -11.1826 26.4546 REMARK 3 T TENSOR REMARK 3 T11: 0.2429 T22: 0.3438 REMARK 3 T33: 0.3323 T12: 0.0150 REMARK 3 T13: -0.1376 T23: 0.1003 REMARK 3 L TENSOR REMARK 3 L11: 0.5177 L22: 0.1239 REMARK 3 L33: 1.0136 L12: 0.1695 REMARK 3 L13: -0.4434 L23: -0.2905 REMARK 3 S TENSOR REMARK 3 S11: 0.0262 S12: -0.0300 S13: -0.0227 REMARK 3 S21: 0.0196 S22: 0.0200 S23: 0.0328 REMARK 3 S31: 0.0556 S32: 0.2414 S33: 0.0069 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 832 THROUGH 994 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.7395 -17.4166 79.1502 REMARK 3 T TENSOR REMARK 3 T11: 0.7080 T22: 1.3150 REMARK 3 T33: 0.1902 T12: -0.0917 REMARK 3 T13: -0.1804 T23: 0.1701 REMARK 3 L TENSOR REMARK 3 L11: 0.0049 L22: 0.1672 REMARK 3 L33: 0.5013 L12: -0.1260 REMARK 3 L13: -0.0134 L23: 0.0265 REMARK 3 S TENSOR REMARK 3 S11: 0.0809 S12: -0.5604 S13: -0.1269 REMARK 3 S21: 0.2688 S22: -0.1081 S23: -0.0963 REMARK 3 S31: -0.0819 S32: 0.7976 S33: 0.1036 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4YCM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1000207215. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : DENZO, SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26767 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.17% C12E8, 0.7 MG ML-1 REMARK 280 PHOSPHATIDYLCHOLINE (PC), 1 MM MGCL2, 16% GLYCEROL, 0.2 MM BLS, REMARK 280 AND 3 MM O,O'-BIS(2-AMINOETHYL)ETHYLENEGLYCOL-N,N,N',N'- REMARK 280 TETRAACETIC ACID (EGTA) WAS DIALYZED AGAINST A BUFFER CON- REMARK 280 SISTING OF 25% GLYCEROL, 9% PEG2000, 1 MM MGCL2, 25 MM MGSO4, REMARK 280 2.5 MM NAN3, 2 MG ML-1 BUTYLHY-DROXYTOLUENE (BHT), 0.2 MM REMARK 280 DITHIOTHREITOL (DTT), 1 MM EGTA, AND 20 MM MES, MICRODIALYSIS, REMARK 280 TEMPERATURE 283K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 292.61750 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 35.83300 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 35.83300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 146.30875 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 35.83300 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 35.83300 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 438.92625 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 35.83300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 35.83300 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 146.30875 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 35.83300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 35.83300 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 438.92625 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 292.61750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 45130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 3 42.61 -106.74 REMARK 500 GLU A 44 75.52 -61.65 REMARK 500 LEU A 49 -142.04 -148.51 REMARK 500 GLU A 82 35.10 -92.65 REMARK 500 THR A 84 -84.19 -94.33 REMARK 500 ALA A 112 112.09 -163.54 REMARK 500 GLN A 177 46.20 -90.76 REMARK 500 THR A 181 -63.76 -142.50 REMARK 500 ASN A 275 32.53 -91.04 REMARK 500 ASN A 280 54.24 -90.21 REMARK 500 ASN A 330 63.42 60.53 REMARK 500 ALA A 331 89.52 -158.34 REMARK 500 ARG A 334 -75.58 -70.98 REMARK 500 GLN A 360 76.43 -100.81 REMARK 500 LYS A 371 149.74 -170.94 REMARK 500 ASP A 373 93.20 -162.05 REMARK 500 CYS A 420 66.66 -68.18 REMARK 500 ASN A 421 118.26 -162.50 REMARK 500 ASN A 456 73.70 56.55 REMARK 500 ASN A 469 61.99 -118.79 REMARK 500 ALA A 470 -60.38 -91.16 REMARK 500 SER A 503 -4.65 -160.79 REMARK 500 SER A 504 80.31 56.65 REMARK 500 MET A 537 96.58 -67.90 REMARK 500 GLU A 588 50.36 -96.45 REMARK 500 VAL A 648 37.89 -141.14 REMARK 500 ASP A 703 -31.57 -154.79 REMARK 500 VAL A 798 -64.52 -104.67 REMARK 500 LYS A 825 47.53 -105.15 REMARK 500 MET A 857 -81.47 -109.88 REMARK 500 HIS A 872 48.19 -109.23 REMARK 500 LEU A 886 -154.96 -143.58 REMARK 500 GLU A 892 42.47 -101.33 REMARK 500 ASN A 990 -66.81 -90.94 REMARK 500 TYR A 991 51.60 -96.85 REMARK 500 LEU A 992 -50.23 -165.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PTY A 1005 REMARK 610 PTY A 1006 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1001 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 711 O REMARK 620 2 LYS A 712 O 80.9 REMARK 620 3 ALA A 714 O 66.5 80.8 REMARK 620 4 GLU A 732 OE1 78.4 157.9 83.9 REMARK 620 5 GLU A 732 OE2 122.2 156.6 103.9 43.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 7BS A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PTY A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PTY A 1006 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4YCN RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS SEQUENCE IS ISOFORM SERCA1A (IDENTIFIER: P04191-2). DBREF 4YCM A 1 994 UNP P04191 AT2A1_RABIT 1 994 SEQRES 1 A 994 AME GLU ALA ALA HIS SER LYS SER THR GLU GLU CYS LEU SEQRES 2 A 994 ALA TYR PHE GLY VAL SER GLU THR THR GLY LEU THR PRO SEQRES 3 A 994 ASP GLN VAL LYS ARG HIS LEU GLU LYS TYR GLY HIS ASN SEQRES 4 A 994 GLU LEU PRO ALA GLU GLU GLY LYS SER LEU TRP GLU LEU SEQRES 5 A 994 VAL ILE GLU GLN PHE GLU ASP LEU LEU VAL ARG ILE LEU SEQRES 6 A 994 LEU LEU ALA ALA CYS ILE SER PHE VAL LEU ALA TRP PHE SEQRES 7 A 994 GLU GLU GLY GLU GLU THR ILE THR ALA PHE VAL GLU PRO SEQRES 8 A 994 PHE VAL ILE LEU LEU ILE LEU ILE ALA ASN ALA ILE VAL SEQRES 9 A 994 GLY VAL TRP GLN GLU ARG ASN ALA GLU ASN ALA ILE GLU SEQRES 10 A 994 ALA LEU LYS GLU TYR GLU PRO GLU MET GLY LYS VAL TYR SEQRES 11 A 994 ARG ALA ASP ARG LYS SER VAL GLN ARG ILE LYS ALA ARG SEQRES 12 A 994 ASP ILE VAL PRO GLY ASP ILE VAL GLU VAL ALA VAL GLY SEQRES 13 A 994 ASP LYS VAL PRO ALA ASP ILE ARG ILE LEU SER ILE LYS SEQRES 14 A 994 SER THR THR LEU ARG VAL ASP GLN SER ILE LEU THR GLY SEQRES 15 A 994 GLU SER VAL SER VAL ILE LYS HIS THR GLU PRO VAL PRO SEQRES 16 A 994 ASP PRO ARG ALA VAL ASN GLN ASP LYS LYS ASN MET LEU SEQRES 17 A 994 PHE SER GLY THR ASN ILE ALA ALA GLY LYS ALA LEU GLY SEQRES 18 A 994 ILE VAL ALA THR THR GLY VAL SER THR GLU ILE GLY LYS SEQRES 19 A 994 ILE ARG ASP GLN MET ALA ALA THR GLU GLN ASP LYS THR SEQRES 20 A 994 PRO LEU GLN GLN LYS LEU ASP GLU PHE GLY GLU GLN LEU SEQRES 21 A 994 SER LYS VAL ILE SER LEU ILE CYS VAL ALA VAL TRP LEU SEQRES 22 A 994 ILE ASN ILE GLY HIS PHE ASN ASP PRO VAL HIS GLY GLY SEQRES 23 A 994 SER TRP ILE ARG GLY ALA ILE TYR TYR PHE LYS ILE ALA SEQRES 24 A 994 VAL ALA LEU ALA VAL ALA ALA ILE PRO GLU GLY LEU PRO SEQRES 25 A 994 ALA VAL ILE THR THR CYS LEU ALA LEU GLY THR ARG ARG SEQRES 26 A 994 MET ALA LYS LYS ASN ALA ILE VAL ARG SER LEU PRO SER SEQRES 27 A 994 VAL GLU THR LEU GLY CYS THR SER VAL ILE CYS SER ASP SEQRES 28 A 994 LYS THR GLY THR LEU THR THR ASN GLN MET SER VAL CYS SEQRES 29 A 994 LYS MET PHE ILE ILE ASP LYS VAL ASP GLY ASP PHE CYS SEQRES 30 A 994 SER LEU ASN GLU PHE SER ILE THR GLY SER THR TYR ALA SEQRES 31 A 994 PRO GLU GLY GLU VAL LEU LYS ASN ASP LYS PRO ILE ARG SEQRES 32 A 994 SER GLY GLN PHE ASP GLY LEU VAL GLU LEU ALA THR ILE SEQRES 33 A 994 CYS ALA LEU CYS ASN ASP SER SER LEU ASP PHE ASN GLU SEQRES 34 A 994 THR LYS GLY VAL TYR GLU LYS VAL GLY GLU ALA THR GLU SEQRES 35 A 994 THR ALA LEU THR THR LEU VAL GLU LYS MET ASN VAL PHE SEQRES 36 A 994 ASN THR GLU VAL ARG ASN LEU SER LYS VAL GLU ARG ALA SEQRES 37 A 994 ASN ALA CYS ASN SER VAL ILE ARG GLN LEU MET LYS LYS SEQRES 38 A 994 GLU PHE THR LEU GLU PHE SER ARG ASP ARG LYS SER MET SEQRES 39 A 994 SER VAL TYR CYS SER PRO ALA LYS SER SER ARG ALA ALA SEQRES 40 A 994 VAL GLY ASN LYS MET PHE VAL LYS GLY ALA PRO GLU GLY SEQRES 41 A 994 VAL ILE ASP ARG CYS ASN TYR VAL ARG VAL GLY THR THR SEQRES 42 A 994 ARG VAL PRO MET THR GLY PRO VAL LYS GLU LYS ILE LEU SEQRES 43 A 994 SER VAL ILE LYS GLU TRP GLY THR GLY ARG ASP THR LEU SEQRES 44 A 994 ARG CYS LEU ALA LEU ALA THR ARG ASP THR PRO PRO LYS SEQRES 45 A 994 ARG GLU GLU MET VAL LEU ASP ASP SER SER ARG PHE MET SEQRES 46 A 994 GLU TYR GLU THR ASP LEU THR PHE VAL GLY VAL VAL GLY SEQRES 47 A 994 MET LEU ASP PRO PRO ARG LYS GLU VAL MET GLY SER ILE SEQRES 48 A 994 GLN LEU CYS ARG ASP ALA GLY ILE ARG VAL ILE MET ILE SEQRES 49 A 994 THR GLY ASP ASN LYS GLY THR ALA ILE ALA ILE CYS ARG SEQRES 50 A 994 ARG ILE GLY ILE PHE GLY GLU ASN GLU GLU VAL ALA ASP SEQRES 51 A 994 ARG ALA TYR THR GLY ARG GLU PHE ASP ASP LEU PRO LEU SEQRES 52 A 994 ALA GLU GLN ARG GLU ALA CYS ARG ARG ALA CYS CYS PHE SEQRES 53 A 994 ALA ARG VAL GLU PRO SER HIS LYS SER LYS ILE VAL GLU SEQRES 54 A 994 TYR LEU GLN SER TYR ASP GLU ILE THR ALA MET THR GLY SEQRES 55 A 994 ASP GLY VAL ASN ASP ALA PRO ALA LEU LYS LYS ALA GLU SEQRES 56 A 994 ILE GLY ILE ALA MET GLY SER GLY THR ALA VAL ALA LYS SEQRES 57 A 994 THR ALA SER GLU MET VAL LEU ALA ASP ASP ASN PHE SER SEQRES 58 A 994 THR ILE VAL ALA ALA VAL GLU GLU GLY ARG ALA ILE TYR SEQRES 59 A 994 ASN ASN MET LYS GLN PHE ILE ARG TYR LEU ILE SER SER SEQRES 60 A 994 ASN VAL GLY GLU VAL VAL CYS ILE PHE LEU THR ALA ALA SEQRES 61 A 994 LEU GLY LEU PRO GLU ALA LEU ILE PRO VAL GLN LEU LEU SEQRES 62 A 994 TRP VAL ASN LEU VAL THR ASP GLY LEU PRO ALA THR ALA SEQRES 63 A 994 LEU GLY PHE ASN PRO PRO ASP LEU ASP ILE MET ASP ARG SEQRES 64 A 994 PRO PRO ARG SER PRO LYS GLU PRO LEU ILE SER GLY TRP SEQRES 65 A 994 LEU PHE PHE ARG TYR MET ALA ILE GLY GLY TYR VAL GLY SEQRES 66 A 994 ALA ALA THR VAL GLY ALA ALA ALA TRP TRP PHE MET TYR SEQRES 67 A 994 ALA GLU ASP GLY PRO GLY VAL THR TYR HIS GLN LEU THR SEQRES 68 A 994 HIS PHE MET GLN CYS THR GLU ASP HIS PRO HIS PHE GLU SEQRES 69 A 994 GLY LEU ASP CYS GLU ILE PHE GLU ALA PRO GLU PRO MET SEQRES 70 A 994 THR MET ALA LEU SER VAL LEU VAL THR ILE GLU MET CYS SEQRES 71 A 994 ASN ALA LEU ASN SER LEU SER GLU ASN GLN SER LEU MET SEQRES 72 A 994 ARG MET PRO PRO TRP VAL ASN ILE TRP LEU LEU GLY SER SEQRES 73 A 994 ILE CYS LEU SER MET SER LEU HIS PHE LEU ILE LEU TYR SEQRES 74 A 994 VAL ASP PRO LEU PRO MET ILE PHE LYS LEU LYS ALA LEU SEQRES 75 A 994 ASP LEU THR GLN TRP LEU MET VAL LEU LYS ILE SER LEU SEQRES 76 A 994 PRO VAL ILE GLY LEU ASP GLU ILE LEU LYS PHE ILE ALA SEQRES 77 A 994 ARG ASN TYR LEU GLU GLY MODRES 4YCM AME A 1 MET MODIFIED RESIDUE HET AME A 1 11 HET NA A1001 1 HET SO4 A1002 5 HET SO4 A1003 5 HET 7BS A1004 95 HET PTY A1005 19 HET PTY A1006 19 HETNAM AME N-ACETYLMETHIONINE HETNAM NA SODIUM ION HETNAM SO4 SULFATE ION HETNAM 7BS (4S,5E,8S,9E,11S,13E,15E,18R)-8-METHOXY-9,11-DIMETHYL- HETNAM 2 7BS 18-[(1Z,4E)-2-METHYLHEXA-1,4-DIEN-1-YL]-2- HETNAM 3 7BS OXOOXACYCLOOCTADECA-5,9,13,15-TETRAEN-4-YL 3-O-METHYL- HETNAM 4 7BS BETA-D-GLUCOPYRANOSIDE HETNAM PTY PHOSPHATIDYLETHANOLAMINE HETSYN 7BS BISELYNGBYASIDE FORMUL 1 AME C7 H13 N O3 S FORMUL 2 NA NA 1+ FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 7BS C34 H52 O9 FORMUL 6 PTY 2(C40 H80 N O8 P) HELIX 1 AA1 SER A 8 GLY A 17 1 10 HELIX 2 AA2 THR A 25 GLY A 37 1 13 HELIX 3 AA3 LEU A 49 GLU A 55 1 7 HELIX 4 AA4 GLN A 56 GLU A 58 5 3 HELIX 5 AA5 ASP A 59 PHE A 78 1 20 HELIX 6 AA6 VAL A 89 VAL A 106 1 18 HELIX 7 AA7 ASN A 114 LYS A 120 1 7 HELIX 8 AA8 ARG A 143 ILE A 145 5 3 HELIX 9 AA9 THR A 226 SER A 229 5 4 HELIX 10 AB1 THR A 230 THR A 242 1 13 HELIX 11 AB2 THR A 247 ASN A 275 1 29 HELIX 12 AB3 ILE A 276 ASP A 281 5 6 HELIX 13 AB4 PRO A 282 GLY A 286 5 5 HELIX 14 AB5 SER A 287 ILE A 307 1 21 HELIX 15 AB6 GLY A 310 LYS A 329 1 20 HELIX 16 AB7 PRO A 337 LEU A 342 1 6 HELIX 17 AB8 GLY A 343 THR A 345 5 3 HELIX 18 AB9 ARG A 403 GLN A 406 5 4 HELIX 19 AC1 PHE A 407 CYS A 420 1 14 HELIX 20 AC2 GLU A 439 ASN A 453 1 15 HELIX 21 AC3 ALA A 470 LEU A 478 1 9 HELIX 22 AC4 ALA A 517 ARG A 524 1 8 HELIX 23 AC5 THR A 538 GLY A 555 1 18 HELIX 24 AC6 ARG A 583 GLU A 588 1 6 HELIX 25 AC7 GLU A 606 GLY A 618 1 13 HELIX 26 AC8 ASN A 628 GLY A 640 1 13 HELIX 27 AC9 GLY A 655 LEU A 661 1 7 HELIX 28 AD1 PRO A 662 ARG A 671 1 10 HELIX 29 AD2 SER A 682 SER A 693 1 12 HELIX 30 AD3 GLY A 704 ASN A 706 5 3 HELIX 31 AD4 ASP A 707 ALA A 714 1 8 HELIX 32 AD5 THR A 724 SER A 731 1 8 HELIX 33 AD6 PHE A 740 LEU A 781 1 42 HELIX 34 AD7 ILE A 788 VAL A 798 1 11 HELIX 35 AD8 ASP A 800 LEU A 807 1 8 HELIX 36 AD9 GLY A 808 ASN A 810 5 3 HELIX 37 AE1 GLY A 831 MET A 857 1 27 HELIX 38 AE2 THR A 866 THR A 871 1 6 HELIX 39 AE3 HIS A 872 CYS A 876 5 5 HELIX 40 AE4 ASP A 887 GLU A 892 5 6 HELIX 41 AE5 ALA A 893 SER A 915 1 23 HELIX 42 AE6 ASN A 930 VAL A 950 1 21 HELIX 43 AE7 LEU A 953 LYS A 958 1 6 HELIX 44 AE8 ASP A 963 LEU A 975 1 13 HELIX 45 AE9 LEU A 975 TYR A 991 1 17 SHEET 1 AA1 6 GLN A 138 LYS A 141 0 SHEET 2 AA1 6 MET A 126 TYR A 130 -1 N GLY A 127 O ILE A 140 SHEET 3 AA1 6 ILE A 150 VAL A 153 -1 O ILE A 150 N TYR A 130 SHEET 4 AA1 6 ALA A 219 THR A 225 -1 O ALA A 219 N VAL A 153 SHEET 5 AA1 6 ASP A 162 ILE A 168 -1 N ARG A 164 O ILE A 222 SHEET 6 AA1 6 MET A 207 LEU A 208 -1 O LEU A 208 N ILE A 163 SHEET 1 AA2 3 VAL A 187 ILE A 188 0 SHEET 2 AA2 3 ARG A 174 ASP A 176 -1 N VAL A 175 O VAL A 187 SHEET 3 AA2 3 ASN A 213 ALA A 216 -1 O ALA A 216 N ARG A 174 SHEET 1 AA3 8 ILE A 332 VAL A 333 0 SHEET 2 AA3 8 MET A 733 LEU A 735 -1 O VAL A 734 N ILE A 332 SHEET 3 AA3 8 ILE A 718 MET A 720 1 N ALA A 719 O LEU A 735 SHEET 4 AA3 8 THR A 698 GLY A 702 1 N MET A 700 O ILE A 718 SHEET 5 AA3 8 VAL A 347 ASP A 351 1 N VAL A 347 O ALA A 699 SHEET 6 AA3 8 ARG A 620 THR A 625 1 O ILE A 624 N SER A 350 SHEET 7 AA3 8 CYS A 675 ALA A 677 1 O PHE A 676 N MET A 623 SHEET 8 AA3 8 ALA A 652 THR A 654 1 N TYR A 653 O ALA A 677 SHEET 1 AA4 8 VAL A 395 LEU A 396 0 SHEET 2 AA4 8 PHE A 376 ILE A 384 -1 N SER A 383 O LEU A 396 SHEET 3 AA4 8 SER A 362 ASP A 373 -1 N CYS A 364 O ILE A 384 SHEET 4 AA4 8 LEU A 591 LEU A 600 -1 O GLY A 598 N LYS A 365 SHEET 5 AA4 8 ARG A 560 ARG A 567 -1 N ARG A 560 O MET A 599 SHEET 6 AA4 8 LYS A 511 GLY A 516 -1 N MET A 512 O ARG A 567 SHEET 7 AA4 8 SER A 493 PRO A 500 -1 N CYS A 498 O LYS A 511 SHEET 8 AA4 8 MET A 479 SER A 488 -1 N LYS A 480 O SER A 499 SHEET 1 AA5 6 VAL A 395 LEU A 396 0 SHEET 2 AA5 6 PHE A 376 ILE A 384 -1 N SER A 383 O LEU A 396 SHEET 3 AA5 6 SER A 362 ASP A 373 -1 N CYS A 364 O ILE A 384 SHEET 4 AA5 6 LEU A 591 LEU A 600 -1 O GLY A 598 N LYS A 365 SHEET 5 AA5 6 CYS A 525 VAL A 530 1 N ARG A 529 O PHE A 593 SHEET 6 AA5 6 THR A 533 PRO A 536 -1 O VAL A 535 N VAL A 528 SHEET 1 AA6 2 SER A 424 ASN A 428 0 SHEET 2 AA6 2 VAL A 433 VAL A 437 -1 O GLU A 435 N ASP A 426 SSBOND 1 CYS A 876 CYS A 888 1555 1555 2.03 LINK C AME A 1 N GLU A 2 1555 1555 1.33 LINK O LEU A 711 NA NA A1001 1555 1555 2.91 LINK O LYS A 712 NA NA A1001 1555 1555 2.51 LINK O ALA A 714 NA NA A1001 1555 1555 3.16 LINK OE1 GLU A 732 NA NA A1001 1555 1555 3.15 LINK OE2 GLU A 732 NA NA A1001 1555 1555 2.48 SITE 1 AC1 5 GLN A 244 LEU A 711 LYS A 712 ALA A 714 SITE 2 AC1 5 GLU A 732 SITE 1 AC2 3 THR A 353 THR A 625 GLY A 626 SITE 1 AC3 4 ALA A 517 PRO A 518 ASN A 628 ARG A 678 SITE 1 AC4 14 GLN A 56 ASP A 59 ASN A 101 GLY A 105 SITE 2 AC4 14 LYS A 246 GLN A 250 LEU A 253 ASP A 254 SITE 3 AC4 14 ILE A 307 PRO A 308 LEU A 311 PRO A 312 SITE 4 AC4 14 ILE A 315 PRO A 337 SITE 1 AC5 4 MET A 923 GLU A 982 PHE A 986 ARG A 989 SITE 1 AC6 4 ILE A 274 ASN A 275 ALA A 780 MET A 923 CRYST1 71.666 71.666 585.235 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013954 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013954 0.000000 0.00000 SCALE3 0.000000 0.000000 0.001709 0.00000 HETATM 1 CT2 AME A 1 1.973 -17.408 16.960 1.00 85.45 C HETATM 2 CT1 AME A 1 1.902 -16.304 17.974 1.00 60.91 C HETATM 3 OT AME A 1 1.173 -16.400 18.963 1.00 53.97 O HETATM 4 CB AME A 1 2.929 -14.515 15.356 1.00 41.86 C HETATM 5 CG AME A 1 1.676 -14.967 14.631 1.00 41.86 C HETATM 6 SD AME A 1 1.512 -14.214 12.997 1.00 85.38 S HETATM 7 CE AME A 1 2.352 -15.416 11.969 1.00 28.54 C HETATM 8 C AME A 1 4.938 -15.171 16.635 1.00 47.61 C HETATM 9 O AME A 1 5.328 -14.007 16.617 1.00 55.58 O HETATM 10 N AME A 1 2.642 -15.343 17.704 1.00 36.17 N HETATM 11 CA AME A 1 3.448 -15.459 16.441 1.00 39.41 C