PDB Short entry for 4YMU HEADER PROTEIN BINDING/TRANSPORT PROTEIN 07-MAR-15 4YMU TITLE CRYSTAL STRUCTURE OF AN AMINO ACID ABC TRANSPORTER COMPLEX WITH TITLE 2 ARGININES AND ATPS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ABC-TYPE POLAR AMINO ACID TRANSPORT SYSTEM, ATPASE COMPND 3 COMPONENT; COMPND 4 CHAIN: J, A; COMPND 5 SYNONYM: NBD; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: ABC-TYPE AMINO ACID TRANSPORT SYSTEM, PERMEASE COMPONENT; COMPND 9 CHAIN: D, C; COMPND 10 SYNONYM: TMD; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CALDANAEROBACTER SUBTERRANEUS SUBSP. SOURCE 3 TENGCONGENSIS MB4; SOURCE 4 ORGANISM_TAXID: 273068; SOURCE 5 STRAIN: MB4; SOURCE 6 GENE: GLNQ, TTE0514; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: CALDANAEROBACTER SUBTERRANEUS SUBSP. SOURCE 11 TENGCONGENSIS MB4; SOURCE 12 ORGANISM_TAXID: 273068; SOURCE 13 STRAIN: MB4; SOURCE 14 GENE: ARTM, TTE0513; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ABC TRANSPORTER, TWO BINDING SITES, SUBSTRATE SPECIFICITY, MEMBRANE KEYWDS 2 PROTEIN COMPLEX, PROTEIN BINDING-TRANSPORT PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.GE,J.YU,M.YANG REVDAT 2 06-MAY-15 4YMU 1 JRNL REVDAT 1 22-APR-15 4YMU 0 JRNL AUTH J.YU,J.GE,J.HEUVELING,E.SCHNEIDER,M.YANG JRNL TITL STRUCTURAL BASIS FOR SUBSTRATE SPECIFICITY OF AN AMINO ACID JRNL TITL 2 ABC TRANSPORTER JRNL REF PROC.NATL.ACAD.SCI.USA V. 112 5243 2015 JRNL REFN ESSN 1091-6490 JRNL PMID 25848002 JRNL DOI 10.1073/PNAS.1415037112 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.50 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 3 NUMBER OF REFLECTIONS : 54117 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 2766 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.5065 - 6.7887 0.98 2811 162 0.2164 0.2402 REMARK 3 2 6.7887 - 5.3905 1.00 2796 131 0.2622 0.2467 REMARK 3 3 5.3905 - 4.7097 1.00 2754 160 0.1908 0.2305 REMARK 3 4 4.7097 - 4.2794 1.00 2737 164 0.1668 0.2073 REMARK 3 5 4.2794 - 3.9728 1.00 2713 144 0.1755 0.2141 REMARK 3 6 3.9728 - 3.7386 1.00 2691 140 0.1987 0.2097 REMARK 3 7 3.7386 - 3.5515 1.00 2724 142 0.2105 0.2700 REMARK 3 8 3.5515 - 3.3969 1.00 2718 135 0.2291 0.2493 REMARK 3 9 3.3969 - 3.2662 1.00 2711 154 0.2354 0.3029 REMARK 3 10 3.2662 - 3.1535 1.00 2711 163 0.2411 0.3205 REMARK 3 11 3.1535 - 3.0549 1.00 2698 136 0.2569 0.3087 REMARK 3 12 3.0549 - 2.9676 1.00 2705 132 0.2728 0.3722 REMARK 3 13 2.9676 - 2.8895 1.00 2674 154 0.2900 0.3655 REMARK 3 14 2.8895 - 2.8190 1.00 2706 153 0.2820 0.3451 REMARK 3 15 2.8190 - 2.7549 0.98 2601 130 0.2922 0.3551 REMARK 3 16 2.7549 - 2.6963 0.94 2516 145 0.2977 0.3179 REMARK 3 17 2.6963 - 2.6423 0.87 2356 132 0.3036 0.3445 REMARK 3 18 2.6423 - 2.5925 0.79 2121 111 0.3020 0.4262 REMARK 3 19 2.5925 - 2.5462 0.71 1923 97 0.3176 0.3604 REMARK 3 20 2.5462 - 2.5030 0.63 1685 81 0.3298 0.3858 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.190 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 7242 REMARK 3 ANGLE : 1.277 9791 REMARK 3 CHIRALITY : 0.086 1179 REMARK 3 PLANARITY : 0.006 1212 REMARK 3 DIHEDRAL : 17.263 2725 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -22.4012 22.4181 32.4543 REMARK 3 T TENSOR REMARK 3 T11: 0.6053 T22: 0.7314 REMARK 3 T33: 0.6040 T12: 0.0205 REMARK 3 T13: 0.0173 T23: 0.0087 REMARK 3 L TENSOR REMARK 3 L11: 0.1201 L22: 0.2879 REMARK 3 L33: 0.7930 L12: 0.0028 REMARK 3 L13: -0.4978 L23: 0.0324 REMARK 3 S TENSOR REMARK 3 S11: -0.0444 S12: -0.1168 S13: -0.0026 REMARK 3 S21: 0.1381 S22: 0.0716 S23: 0.0213 REMARK 3 S31: -0.0046 S32: 0.0798 S33: -0.0259 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4YMU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000207722. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-DEC-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0-6.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54117 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 49.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.82400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.710 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3DHW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG4000, 0.1M NACL, 0.1M MGCL, REMARK 280 0.1M NA CITRATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 149.31800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 149.31800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 48.38250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 57.04900 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 48.38250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 57.04900 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 149.31800 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 48.38250 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 57.04900 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 149.31800 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 48.38250 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 57.04900 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -77.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: J, A, D, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA D 216 REMARK 465 GLY D 217 REMARK 465 ASP D 218 REMARK 465 ILE D 219 REMARK 465 ARG D 220 REMARK 465 ARG C 215 REMARK 465 ALA C 216 REMARK 465 GLY C 217 REMARK 465 ASP C 218 REMARK 465 ILE C 219 REMARK 465 ARG C 220 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS J 69 CG CD CE NZ REMARK 470 LYS A 69 CG CD CE NZ REMARK 470 LYS A 74 CG CD CE NZ REMARK 470 LYS D 52 CG CD CE NZ REMARK 470 LYS C 52 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE J 86 -53.99 73.53 REMARK 500 GLN J 154 65.30 39.58 REMARK 500 ASP J 211 53.12 39.69 REMARK 500 ARG J 226 30.20 -141.73 REMARK 500 PHE A 86 -54.74 74.52 REMARK 500 GLU A 170 2.61 -65.88 REMARK 500 ASP A 211 51.75 38.67 REMARK 500 ARG A 226 32.44 -142.49 REMARK 500 VAL D 136 -56.68 -121.33 REMARK 500 ASP D 170 -166.42 -77.68 REMARK 500 GLN C 80 -3.96 -59.17 REMARK 500 VAL C 136 -56.60 -121.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG J 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER J 41 OG REMARK 620 2 ATP J 301 O3G 136.5 REMARK 620 3 ATP J 301 O2B 84.7 79.5 REMARK 620 4 ATP J 301 O2A 107.5 106.4 73.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 41 OG REMARK 620 2 ATP A 301 O3G 111.1 REMARK 620 3 ATP A 301 O2B 66.6 59.9 REMARK 620 4 ATP A 301 O1A 93.4 91.8 57.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ATP J 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG J 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ATP A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ARG D 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ARG C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Ligand LEU C 206 bound to THR C REMARK 800 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4YMS RELATED DB: PDB REMARK 900 RELATED ID: 4YMT RELATED DB: PDB REMARK 900 RELATED ID: 4YMV RELATED DB: PDB REMARK 900 RELATED ID: 4YMW RELATED DB: PDB REMARK 900 RELATED ID: 4YMX RELATED DB: PDB DBREF 4YMU J 1 240 UNP Q8RCC2 Q8RCC2_CALS4 1 240 DBREF 4YMU A 1 240 UNP Q8RCC2 Q8RCC2_CALS4 1 240 DBREF 4YMU D 1 220 UNP Q8RCC3 Q8RCC3_CALS4 1 220 DBREF 4YMU C 1 220 UNP Q8RCC3 Q8RCC3_CALS4 1 220 SEQRES 1 J 240 MET ILE PHE VAL ASN ASP VAL TYR LYS ASN PHE GLY SER SEQRES 2 J 240 LEU GLU VAL LEU LYS GLY VAL THR LEU LYS VAL ASN LYS SEQRES 3 J 240 GLY GLU VAL VAL VAL ILE ILE GLY PRO SER GLY SER GLY SEQRES 4 J 240 LYS SER THR LEU LEU ARG CYS ILE ASN LEU LEU GLU GLU SEQRES 5 J 240 PRO THR LYS GLY GLU VAL PHE ILE ASP GLY VAL LYS ILE SEQRES 6 J 240 ASN ASN GLY LYS VAL ASN ILE ASN LYS VAL ARG GLN LYS SEQRES 7 J 240 VAL GLY MET VAL PHE GLN HIS PHE ASN LEU PHE PRO HIS SEQRES 8 J 240 LEU THR ALA ILE GLU ASN ILE THR LEU ALA PRO VAL LYS SEQRES 9 J 240 VAL LYS LYS MET ASN LYS LYS GLU ALA GLU GLU LEU ALA SEQRES 10 J 240 VAL ASP LEU LEU ALA LYS VAL GLY LEU LEU ASP LYS LYS SEQRES 11 J 240 ASP GLN TYR PRO ILE LYS LEU SER GLY GLY GLN LYS GLN SEQRES 12 J 240 ARG LEU ALA ILE ALA ARG ALA LEU ALA MET GLN PRO GLU SEQRES 13 J 240 VAL MET LEU PHE ASP GLU PRO THR SER ALA LEU ASP PRO SEQRES 14 J 240 GLU MET VAL LYS GLU VAL LEU ASN VAL MET LYS GLN LEU SEQRES 15 J 240 ALA ASN GLU GLY MET THR MET VAL VAL VAL THR HIS GLU SEQRES 16 J 240 MET GLY PHE ALA ARG GLU VAL GLY ASP ARG VAL ILE PHE SEQRES 17 J 240 MET ASP ASP GLY VAL ILE VAL GLU GLU GLY THR PRO GLU SEQRES 18 J 240 GLU ILE PHE TYR ARG ALA LYS ASN GLU ARG THR ARG GLU SEQRES 19 J 240 PHE LEU SER LYS ILE LEU SEQRES 1 A 240 MET ILE PHE VAL ASN ASP VAL TYR LYS ASN PHE GLY SER SEQRES 2 A 240 LEU GLU VAL LEU LYS GLY VAL THR LEU LYS VAL ASN LYS SEQRES 3 A 240 GLY GLU VAL VAL VAL ILE ILE GLY PRO SER GLY SER GLY SEQRES 4 A 240 LYS SER THR LEU LEU ARG CYS ILE ASN LEU LEU GLU GLU SEQRES 5 A 240 PRO THR LYS GLY GLU VAL PHE ILE ASP GLY VAL LYS ILE SEQRES 6 A 240 ASN ASN GLY LYS VAL ASN ILE ASN LYS VAL ARG GLN LYS SEQRES 7 A 240 VAL GLY MET VAL PHE GLN HIS PHE ASN LEU PHE PRO HIS SEQRES 8 A 240 LEU THR ALA ILE GLU ASN ILE THR LEU ALA PRO VAL LYS SEQRES 9 A 240 VAL LYS LYS MET ASN LYS LYS GLU ALA GLU GLU LEU ALA SEQRES 10 A 240 VAL ASP LEU LEU ALA LYS VAL GLY LEU LEU ASP LYS LYS SEQRES 11 A 240 ASP GLN TYR PRO ILE LYS LEU SER GLY GLY GLN LYS GLN SEQRES 12 A 240 ARG LEU ALA ILE ALA ARG ALA LEU ALA MET GLN PRO GLU SEQRES 13 A 240 VAL MET LEU PHE ASP GLU PRO THR SER ALA LEU ASP PRO SEQRES 14 A 240 GLU MET VAL LYS GLU VAL LEU ASN VAL MET LYS GLN LEU SEQRES 15 A 240 ALA ASN GLU GLY MET THR MET VAL VAL VAL THR HIS GLU SEQRES 16 A 240 MET GLY PHE ALA ARG GLU VAL GLY ASP ARG VAL ILE PHE SEQRES 17 A 240 MET ASP ASP GLY VAL ILE VAL GLU GLU GLY THR PRO GLU SEQRES 18 A 240 GLU ILE PHE TYR ARG ALA LYS ASN GLU ARG THR ARG GLU SEQRES 19 A 240 PHE LEU SER LYS ILE LEU SEQRES 1 D 220 MET THR VAL ASP PHE LEU SER MET VAL LYS TYR THR PRO SEQRES 2 D 220 LEU PHE ILE SER GLY LEU ILE MET THR LEU LYS LEU THR SEQRES 3 D 220 PHE LEU ALA VAL THR ILE GLY VAL LEU MET GLY LEU PHE SEQRES 4 D 220 ILE ALA LEU MET LYS MET SER SER ILE LYS PRO ILE LYS SEQRES 5 D 220 LEU VAL ALA SER SER TYR ILE GLU VAL ILE ARG GLY THR SEQRES 6 D 220 PRO LEU LEU VAL GLN LEU LEU LEU ILE TYR ASN GLY LEU SEQRES 7 D 220 MET GLN PHE GLY MET ASN ILE PRO ALA PHE THR ALA GLY SEQRES 8 D 220 VAL SER ALA LEU ALA ILE ASN SER SER ALA TYR VAL ALA SEQRES 9 D 220 GLU ILE ILE ARG ALA GLY ILE GLN ALA VAL ASP PRO GLY SEQRES 10 D 220 GLN ASN GLU ALA ALA ARG SER LEU GLY MET THR HIS ALA SEQRES 11 D 220 MET ALA MET ARG TYR VAL ILE ILE PRO GLN ALA ILE LYS SEQRES 12 D 220 ASN ILE LEU PRO ALA LEU GLY ASN GLU PHE ILE VAL MET SEQRES 13 D 220 LEU LYS GLU SER ALA ILE VAL SER VAL ILE GLY PHE ALA SEQRES 14 D 220 ASP LEU THR ARG GLN ALA ASP ILE ILE GLN SER VAL THR SEQRES 15 D 220 TYR ARG TYR PHE GLU PRO TYR ILE ILE ILE ALA ALA ILE SEQRES 16 D 220 TYR PHE VAL MET THR LEU THR PHE SER LYS LEU LEU SER SEQRES 17 D 220 LEU PHE GLU ARG ARG LEU ARG ALA GLY ASP ILE ARG SEQRES 1 C 220 MET THR VAL ASP PHE LEU SER MET VAL LYS TYR THR PRO SEQRES 2 C 220 LEU PHE ILE SER GLY LEU ILE MET THR LEU LYS LEU THR SEQRES 3 C 220 PHE LEU ALA VAL THR ILE GLY VAL LEU MET GLY LEU PHE SEQRES 4 C 220 ILE ALA LEU MET LYS MET SER SER ILE LYS PRO ILE LYS SEQRES 5 C 220 LEU VAL ALA SER SER TYR ILE GLU VAL ILE ARG GLY THR SEQRES 6 C 220 PRO LEU LEU VAL GLN LEU LEU LEU ILE TYR ASN GLY LEU SEQRES 7 C 220 MET GLN PHE GLY MET ASN ILE PRO ALA PHE THR ALA GLY SEQRES 8 C 220 VAL SER ALA LEU ALA ILE ASN SER SER ALA TYR VAL ALA SEQRES 9 C 220 GLU ILE ILE ARG ALA GLY ILE GLN ALA VAL ASP PRO GLY SEQRES 10 C 220 GLN ASN GLU ALA ALA ARG SER LEU GLY MET THR HIS ALA SEQRES 11 C 220 MET ALA MET ARG TYR VAL ILE ILE PRO GLN ALA ILE LYS SEQRES 12 C 220 ASN ILE LEU PRO ALA LEU GLY ASN GLU PHE ILE VAL MET SEQRES 13 C 220 LEU LYS GLU SER ALA ILE VAL SER VAL ILE GLY PHE ALA SEQRES 14 C 220 ASP LEU THR ARG GLN ALA ASP ILE ILE GLN SER VAL THR SEQRES 15 C 220 TYR ARG TYR PHE GLU PRO TYR ILE ILE ILE ALA ALA ILE SEQRES 16 C 220 TYR PHE VAL MET THR LEU THR PHE SER LYS LEU LEU SER SEQRES 17 C 220 LEU PHE GLU ARG ARG LEU ARG ALA GLY ASP ILE ARG HET ATP J 301 31 HET MG J 302 1 HET ATP A 301 31 HET MG A 302 1 HET ARG D 301 12 HET ARG C 301 12 HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM ARG ARGININE FORMUL 5 ATP 2(C10 H16 N5 O13 P3) FORMUL 6 MG 2(MG 2+) FORMUL 9 ARG 2(C6 H15 N4 O2 1+) HELIX 1 AA1 GLY J 39 ASN J 48 1 10 HELIX 2 AA2 ASN J 71 LYS J 78 1 8 HELIX 3 AA3 THR J 93 LYS J 106 1 14 HELIX 4 AA4 ASN J 109 VAL J 124 1 16 HELIX 5 AA5 LEU J 126 LYS J 130 5 5 HELIX 6 AA6 TYR J 133 LEU J 137 5 5 HELIX 7 AA7 SER J 138 MET J 153 1 16 HELIX 8 AA8 ASP J 168 GLU J 170 5 3 HELIX 9 AA9 MET J 171 GLU J 185 1 15 HELIX 10 AB1 GLU J 195 GLY J 203 1 9 HELIX 11 AB2 THR J 219 ALA J 227 1 9 HELIX 12 AB3 ASN J 229 LEU J 240 1 12 HELIX 13 AB4 GLY A 39 ASN A 48 1 10 HELIX 14 AB5 ASN A 71 LYS A 78 1 8 HELIX 15 AB6 THR A 93 LYS A 106 1 14 HELIX 16 AB7 ASN A 109 VAL A 124 1 16 HELIX 17 AB8 LEU A 126 LYS A 130 5 5 HELIX 18 AB9 TYR A 133 LEU A 137 5 5 HELIX 19 AC1 SER A 138 ALA A 152 1 15 HELIX 20 AC2 ASP A 168 GLU A 170 5 3 HELIX 21 AC3 MET A 171 GLU A 185 1 15 HELIX 22 AC4 GLU A 195 GLY A 203 1 9 HELIX 23 AC5 THR A 219 ALA A 227 1 9 HELIX 24 AC6 ASN A 229 LEU A 240 1 12 HELIX 25 AC7 PHE D 5 LYS D 10 1 6 HELIX 26 AC8 TYR D 11 MET D 45 1 35 HELIX 27 AC9 ILE D 48 GLY D 64 1 17 HELIX 28 AD1 PRO D 66 ASN D 76 1 11 HELIX 29 AD2 LEU D 78 GLY D 82 5 5 HELIX 30 AD3 PRO D 86 ALA D 113 1 28 HELIX 31 AD4 PRO D 116 LEU D 125 1 10 HELIX 32 AD5 THR D 128 VAL D 136 1 9 HELIX 33 AD6 VAL D 136 ALA D 161 1 26 HELIX 34 AD7 ILE D 162 VAL D 165 5 4 HELIX 35 AD8 ARG D 173 TYR D 183 1 11 HELIX 36 AD9 TYR D 185 ARG D 215 1 31 HELIX 37 AE1 PHE C 5 LYS C 10 5 6 HELIX 38 AE2 TYR C 11 MET C 45 1 35 HELIX 39 AE3 ILE C 48 GLY C 64 1 17 HELIX 40 AE4 PRO C 66 GLN C 80 1 15 HELIX 41 AE5 PRO C 86 GLN C 112 1 27 HELIX 42 AE6 ASP C 115 LEU C 125 1 11 HELIX 43 AE7 THR C 128 VAL C 136 1 9 HELIX 44 AE8 VAL C 136 ALA C 161 1 26 HELIX 45 AE9 ILE C 162 GLY C 167 5 6 HELIX 46 AF1 ARG C 173 TYR C 183 1 11 HELIX 47 AF2 TYR C 185 ARG C 213 1 29 SHEET 1 AA1 4 LEU J 14 VAL J 24 0 SHEET 2 AA1 4 ILE J 2 PHE J 11 -1 N VAL J 4 O LEU J 22 SHEET 3 AA1 4 LYS J 55 ILE J 60 -1 O GLU J 57 N ASN J 5 SHEET 4 AA1 4 VAL J 63 LYS J 64 -1 O VAL J 63 N ILE J 60 SHEET 1 AA2 6 VAL J 79 VAL J 82 0 SHEET 2 AA2 6 VAL J 157 ASP J 161 1 O ASP J 161 N VAL J 82 SHEET 3 AA2 6 THR J 188 VAL J 192 1 O VAL J 192 N PHE J 160 SHEET 4 AA2 6 VAL J 29 ILE J 33 1 N VAL J 30 O MET J 189 SHEET 5 AA2 6 ARG J 205 ASP J 210 1 O ILE J 207 N VAL J 31 SHEET 6 AA2 6 VAL J 213 GLY J 218 -1 O GLY J 218 N VAL J 206 SHEET 1 AA3 4 LEU A 14 VAL A 24 0 SHEET 2 AA3 4 ILE A 2 PHE A 11 -1 N VAL A 4 O LEU A 22 SHEET 3 AA3 4 LYS A 55 ILE A 60 -1 O GLU A 57 N ASN A 5 SHEET 4 AA3 4 VAL A 63 LYS A 64 -1 O VAL A 63 N ILE A 60 SHEET 1 AA4 6 VAL A 79 VAL A 82 0 SHEET 2 AA4 6 VAL A 157 ASP A 161 1 O ASP A 161 N VAL A 82 SHEET 3 AA4 6 THR A 188 VAL A 192 1 O VAL A 190 N PHE A 160 SHEET 4 AA4 6 VAL A 29 ILE A 33 1 N ILE A 32 O VAL A 191 SHEET 5 AA4 6 ARG A 205 ASP A 210 1 O ARG A 205 N VAL A 31 SHEET 6 AA4 6 VAL A 213 GLY A 218 -1 O GLY A 218 N VAL A 206 LINK OG SER J 41 MG MG J 302 1555 1555 2.30 LINK OG SER A 41 MG MG A 302 1555 1555 2.76 LINK O THR C 202 CD1 LEU C 206 1555 1555 1.36 LINK O3G ATP J 301 MG MG J 302 1555 1555 2.26 LINK O2B ATP J 301 MG MG J 302 1555 1555 2.36 LINK O2A ATP J 301 MG MG J 302 1555 1555 2.42 LINK O3G ATP A 301 MG MG A 302 1555 1555 2.43 LINK O2B ATP A 301 MG MG A 302 1555 1555 2.91 LINK O1A ATP A 301 MG MG A 302 1555 1555 2.69 SITE 1 AC1 13 PHE J 11 VAL J 16 SER J 36 GLY J 37 SITE 2 AC1 13 SER J 38 GLY J 39 LYS J 40 SER J 41 SITE 3 AC1 13 THR J 42 GLU J 51 GLU J 162 HIS J 194 SITE 4 AC1 13 MG J 302 SITE 1 AC2 3 SER J 41 GLU J 162 ATP J 301 SITE 1 AC3 13 PHE A 11 VAL A 16 SER A 36 GLY A 37 SITE 2 AC3 13 SER A 38 GLY A 39 LYS A 40 SER A 41 SITE 3 AC3 13 THR A 42 GLU A 51 GLU A 162 HIS A 194 SITE 4 AC3 13 MG A 302 SITE 1 AC4 3 SER A 41 GLU A 162 ATP A 301 SITE 1 AC5 9 LYS C 158 GLU C 159 ARG C 301 LEU D 67 SITE 2 AC5 9 ASN D 98 TYR D 102 GLU D 152 MET D 156 SITE 3 AC5 9 GLU D 159 SITE 1 AC6 10 PRO C 66 LEU C 67 ASN C 98 TYR C 102 SITE 2 AC6 10 GLU C 152 MET C 156 GLU C 159 LYS D 158 SITE 3 AC6 10 GLU D 159 ARG D 301 SITE 1 AC7 8 THR C 202 PHE C 203 SER C 204 LYS C 205 SITE 2 AC7 8 LEU C 207 SER C 208 LEU C 209 PHE C 210 CRYST1 96.765 114.098 298.636 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010334 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008764 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003349 0.00000