PDB Short entry for 4Z0R HEADER PROTEIN BINDING/STRUCTURAL PROTEIN 26-MAR-15 4Z0R TITLE CRYSTAL STRUCTURE OF THE CW DOMAIN OF ZCWPW2 MUTANT F78R IN COMPLEX TITLE 2 WITH HISTONE H3 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ZINC FINGER CW-TYPE PWWP DOMAIN PROTEIN 2; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: CW DOMAIN (UNP RESIDUES 21-78); COMPND 5 SYNONYM: ZCWPW2; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: HISTONE H3.1; COMPND 10 CHAIN: D; COMPND 11 FRAGMENT: N-TERMINAL TAIL (UNP RESIDUES 2-16); COMPND 12 SYNONYM: HISTONE H3; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ZCWPW2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-V2R-PRARE2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28-MHL; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606 KEYWDS STRUCTURAL GENOMICS, CW DOMAIN, STRUCTURAL GENOMICS CONSORTIUM, SGC, KEYWDS 2 PROTEIN BINDING-STRUCTURAL PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.LIU,W.TEMPEL,C.BOUNTRA,C.H.ARROWSMITH,A.M.EDWARDS,J.MIN,STRUCTURAL AUTHOR 2 GENOMICS CONSORTIUM (SGC) REVDAT 3 27-SEP-23 4Z0R 1 REMARK REVDAT 2 22-NOV-17 4Z0R 1 SOURCE REMARK REVDAT 1 08-APR-15 4Z0R 0 JRNL AUTH Y.LIU,W.TEMPEL,C.BOUNTRA,C.H.ARROWSMITH,A.M.EDWARDS,J.MIN JRNL TITL CRYSTAL STRUCTURE OF THE CW DOMAIN OF ZCWPW2 MUTANT F78R IN JRNL TITL 2 COMPLEX WITH HISTONE H3 PEPTIDE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.44 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : THIN SHELLS (SFTOOLS) REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1580 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1483 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 130 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.56000 REMARK 3 B22 (A**2) : -0.56000 REMARK 3 B33 (A**2) : 1.80000 REMARK 3 B12 (A**2) : -0.28000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.076 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.074 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.058 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.336 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: MODEL GEOMETRY WAS EVALUATED WITH REMARK 3 MOLPROBITY. REMARK 4 REMARK 4 4Z0R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000208413. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9786 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.2, XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37974 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 41.442 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 1.03900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4O62 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2 M AMMONIUM SULFATE, 2% PEG400, 0.1 M REMARK 280 HEPES SODIUM, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 63.32950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 36.56330 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 21.09033 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 63.32950 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 36.56330 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 21.09033 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 63.32950 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 36.56330 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 21.09033 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 73.12661 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 42.18067 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 73.12661 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 42.18067 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 73.12661 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 42.18067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 20 REMARK 465 VAL A 21 REMARK 465 GLY B 20 REMARK 465 VAL B 21 REMARK 465 GLY C 20 REMARK 465 VAL C 21 REMARK 465 THR D 11 REMARK 465 GLY D 12 REMARK 465 GLY D 13 REMARK 465 LYS D 14 REMARK 465 ALA D 15 REMARK 465 NH2 D 16 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 22 CG CD OE1 OE2 REMARK 470 GLU A 36 CG CD OE1 OE2 REMARK 470 LYS A 51 NZ REMARK 470 ARG A 78 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 22 N CB CG CD OE1 OE2 REMARK 470 GLU B 36 CG CD OE1 OE2 REMARK 470 ARG B 78 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 22 CG CD OE1 OE2 REMARK 470 ARG C 78 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 9 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS B 38 -71.77 -115.56 REMARK 500 TYR B 68 41.07 -142.82 REMARK 500 LEU C 39 19.81 58.03 REMARK 500 TYR C 68 40.03 -140.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 33 SG REMARK 620 2 CYS A 38 SG 112.8 REMARK 620 3 CYS A 60 SG 106.2 108.2 REMARK 620 4 CYS A 71 SG 107.2 108.6 114.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 33 SG REMARK 620 2 CYS B 38 SG 112.7 REMARK 620 3 CYS B 60 SG 106.1 109.5 REMARK 620 4 CYS B 71 SG 106.9 109.4 112.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 33 SG REMARK 620 2 CYS C 38 SG 112.9 REMARK 620 3 CYS C 60 SG 106.2 107.5 REMARK 620 4 CYS C 71 SG 109.5 107.7 113.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 1009 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 1001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4Z0O RELATED DB: PDB DBREF 4Z0R A 21 78 UNP Q504Y3 ZCPW2_HUMAN 21 78 DBREF 4Z0R B 21 78 UNP Q504Y3 ZCPW2_HUMAN 21 78 DBREF 4Z0R C 21 78 UNP Q504Y3 ZCPW2_HUMAN 21 78 DBREF 4Z0R D 1 15 UNP P68431 H31_HUMAN 2 16 SEQADV 4Z0R GLY A 20 UNP Q504Y3 EXPRESSION TAG SEQADV 4Z0R ARG A 78 UNP Q504Y3 PHE 78 ENGINEERED MUTATION SEQADV 4Z0R GLY B 20 UNP Q504Y3 EXPRESSION TAG SEQADV 4Z0R ARG B 78 UNP Q504Y3 PHE 78 ENGINEERED MUTATION SEQADV 4Z0R GLY C 20 UNP Q504Y3 EXPRESSION TAG SEQADV 4Z0R ARG C 78 UNP Q504Y3 PHE 78 ENGINEERED MUTATION SEQADV 4Z0R NH2 D 16 UNP P68431 AMIDATION SEQRES 1 A 59 GLY VAL GLU ASN MET TYR VAL ASN LYS VAL TRP VAL GLN SEQRES 2 A 59 CYS GLU ASN GLU ASN CYS LEU LYS TRP ARG LEU LEU SER SEQRES 3 A 59 SER GLU ASP SER ALA LYS VAL ASP HIS ASP GLU PRO TRP SEQRES 4 A 59 TYR CYS PHE MET ASN THR ASP SER ARG TYR ASN ASN CYS SEQRES 5 A 59 SER ILE SER GLU GLU ASP ARG SEQRES 1 B 59 GLY VAL GLU ASN MET TYR VAL ASN LYS VAL TRP VAL GLN SEQRES 2 B 59 CYS GLU ASN GLU ASN CYS LEU LYS TRP ARG LEU LEU SER SEQRES 3 B 59 SER GLU ASP SER ALA LYS VAL ASP HIS ASP GLU PRO TRP SEQRES 4 B 59 TYR CYS PHE MET ASN THR ASP SER ARG TYR ASN ASN CYS SEQRES 5 B 59 SER ILE SER GLU GLU ASP ARG SEQRES 1 C 59 GLY VAL GLU ASN MET TYR VAL ASN LYS VAL TRP VAL GLN SEQRES 2 C 59 CYS GLU ASN GLU ASN CYS LEU LYS TRP ARG LEU LEU SER SEQRES 3 C 59 SER GLU ASP SER ALA LYS VAL ASP HIS ASP GLU PRO TRP SEQRES 4 C 59 TYR CYS PHE MET ASN THR ASP SER ARG TYR ASN ASN CYS SEQRES 5 C 59 SER ILE SER GLU GLU ASP ARG SEQRES 1 D 16 ALA ARG THR M3L GLN THR ALA ARG LYS SER THR GLY GLY SEQRES 2 D 16 LYS ALA NH2 MODRES 4Z0R M3L D 4 LYS MODIFIED RESIDUE HET M3L D 4 12 HET ZN A1001 1 HET SO4 A1002 5 HET UNX A1003 1 HET UNX A1004 1 HET UNX A1005 1 HET UNX A1006 1 HET UNX A1007 1 HET UNX A1008 1 HET UNX A1009 1 HET UNX A1010 1 HET UNX A1011 1 HET UNX A1012 1 HET UNX A1013 1 HET ZN B1001 1 HET UNX B1002 1 HET UNX B1003 1 HET UNX B1004 1 HET UNX B1005 1 HET UNX B1006 1 HET UNX B1007 1 HET UNX B1008 1 HET EDO B1009 4 HET ZN C1001 1 HET UNX C1002 1 HET UNX C1003 1 HET UNX C1004 1 HET UNX C1005 1 HET UNX D 101 1 HET UNX D 102 1 HETNAM M3L N-TRIMETHYLLYSINE HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION HETNAM UNX UNKNOWN ATOM OR ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 4 M3L C9 H21 N2 O2 1+ FORMUL 5 ZN 3(ZN 2+) FORMUL 6 SO4 O4 S 2- FORMUL 7 UNX 24(X) FORMUL 26 EDO C2 H6 O2 FORMUL 34 HOH *130(H2 O) HELIX 1 AA1 SER A 45 VAL A 52 1 8 HELIX 2 AA2 TYR A 59 ASN A 63 5 5 HELIX 3 AA3 SER B 45 VAL B 52 1 8 HELIX 4 AA4 TYR B 59 ASN B 63 5 5 HELIX 5 AA5 SER C 45 VAL C 52 1 8 HELIX 6 AA6 TYR C 59 ASN C 63 5 5 SHEET 1 AA1 2 TRP A 30 GLN A 32 0 SHEET 2 AA1 2 TRP A 41 LEU A 43 -1 O ARG A 42 N VAL A 31 SHEET 1 AA2 3 TRP B 41 LEU B 43 0 SHEET 2 AA2 3 VAL B 29 GLN B 32 -1 N VAL B 31 O ARG B 42 SHEET 3 AA2 3 THR D 3 GLN D 5 -1 O M3L D 4 N TRP B 30 SHEET 1 AA3 2 TRP C 30 GLN C 32 0 SHEET 2 AA3 2 TRP C 41 LEU C 43 -1 O ARG C 42 N VAL C 31 LINK C THR D 3 N M3L D 4 1555 1555 1.34 LINK C M3L D 4 N GLN D 5 1555 1555 1.32 LINK SG CYS A 33 ZN ZN A1001 1555 1555 2.39 LINK SG CYS A 38 ZN ZN A1001 1555 1555 2.34 LINK SG CYS A 60 ZN ZN A1001 1555 1555 2.33 LINK SG CYS A 71 ZN ZN A1001 1555 1555 2.40 LINK SG CYS B 33 ZN ZN B1001 1555 1555 2.35 LINK SG CYS B 38 ZN ZN B1001 1555 1555 2.33 LINK SG CYS B 60 ZN ZN B1001 1555 1555 2.32 LINK SG CYS B 71 ZN ZN B1001 1555 1555 2.29 LINK SG CYS C 33 ZN ZN C1001 1555 1555 2.33 LINK SG CYS C 38 ZN ZN C1001 1555 1555 2.34 LINK SG CYS C 60 ZN ZN C1001 1555 1555 2.35 LINK SG CYS C 71 ZN ZN C1001 1555 1555 2.32 SITE 1 AC1 4 CYS A 33 CYS A 38 CYS A 60 CYS A 71 SITE 1 AC2 5 VAL A 52 HIS A 54 LYS C 40 SER C 74 SITE 2 AC2 5 GLU C 75 SITE 1 AC3 4 CYS B 33 CYS B 38 CYS B 60 CYS B 71 SITE 1 AC4 6 SER A 74 GLU A 75 VAL B 52 ASP B 53 SITE 2 AC4 6 HIS B 54 ASP B 55 SITE 1 AC5 4 CYS C 33 CYS C 38 CYS C 60 CYS C 71 CRYST1 126.659 126.659 63.271 90.00 90.00 120.00 H 3 27 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007895 0.004558 0.000000 0.00000 SCALE2 0.000000 0.009117 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015805 0.00000