PDB Short entry for 4Z7G HEADER TRANSFERASE 07-APR-15 4Z7G TITLE CRYSTAL STRUCTURE OF HUMAN IRE1 CYTOPLASMIC KINASE-RNASE REGION - APO COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE/ENDORIBONUCLEASE IRE1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ENDOPLASMIC RETICULUM-TO-NUCLEUS SIGNALING 1,INOSITOL- COMPND 5 REQUIRING PROTEIN 1,HIRE1P,IRE1-ALPHA,IRE1A; COMPND 6 EC: 2.7.11.1,3.1.26.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ERN1, IRE1; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS TRANSFERASE, KINASE, RNASE, UNFOLDED PROTEIN RESPONSE EXPDTA X-RAY DIFFRACTION AUTHOR R.BAYLISS,A.JOSHI REVDAT 3 09-OCT-19 4Z7G 1 JRNL REVDAT 2 01-JUL-15 4Z7G 1 JRNL REVDAT 1 27-MAY-15 4Z7G 0 JRNL AUTH A.JOSHI,Y.NEWBATT,P.C.MCANDREW,M.STUBBS,R.BURKE, JRNL AUTH 2 M.W.RICHARDS,C.BHATIA,J.J.CALDWELL,T.MCHARDY,I.COLLINS, JRNL AUTH 3 R.BAYLISS JRNL TITL MOLECULAR MECHANISMS OF HUMAN IRE1 ACTIVATION THROUGH JRNL TITL 2 DIMERIZATION AND LIGAND BINDING. JRNL REF ONCOTARGET V. 6 13019 2015 JRNL REFN ESSN 1949-2553 JRNL PMID 25968568 JRNL DOI 10.18632/ONCOTARGET.3864 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.1 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 85.33 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 32479 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.190 REMARK 3 FREE R VALUE TEST SET COUNT : 1687 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 16 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.69 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.46 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2953 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2135 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2791 REMARK 3 BIN R VALUE (WORKING SET) : 0.2108 REMARK 3 BIN FREE R VALUE : 0.2619 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.49 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 162 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6025 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 15 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 74.12 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 100.9 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 19.43200 REMARK 3 B22 (A**2) : -17.49230 REMARK 3 B33 (A**2) : -1.93970 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -5.07210 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.486 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.408 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.243 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.449 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.253 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.931 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 6173 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 8336 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2171 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 144 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 893 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 6173 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 779 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 6891 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.11 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.53 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 19.55 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|562 - 642} REMARK 3 ORIGIN FOR THE GROUP (A): 7.0545 8.0071 61.0123 REMARK 3 T TENSOR REMARK 3 T11: -0.0990 T22: -0.0356 REMARK 3 T33: -0.0570 T12: 0.1669 REMARK 3 T13: 0.1517 T23: -0.1047 REMARK 3 L TENSOR REMARK 3 L11: 0.9332 L22: 2.5607 REMARK 3 L33: 7.7734 L12: -0.2493 REMARK 3 L13: -0.0042 L23: 2.9025 REMARK 3 S TENSOR REMARK 3 S11: -0.0784 S12: -0.5221 S13: 0.1495 REMARK 3 S21: 0.4920 S22: 0.3797 S23: 0.4368 REMARK 3 S31: -0.3976 S32: -0.2056 S33: -0.3013 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {A|643 - 769} REMARK 3 ORIGIN FOR THE GROUP (A): 1.1744 10.9801 42.2870 REMARK 3 T TENSOR REMARK 3 T11: -0.3066 T22: -0.2207 REMARK 3 T33: 0.2795 T12: 0.0101 REMARK 3 T13: 0.0265 T23: -0.0357 REMARK 3 L TENSOR REMARK 3 L11: 8.0902 L22: 2.0360 REMARK 3 L33: 4.0742 L12: -0.7216 REMARK 3 L13: 1.1417 L23: -0.6891 REMARK 3 S TENSOR REMARK 3 S11: -0.1567 S12: -0.0006 S13: 0.3150 REMARK 3 S21: 0.1516 S22: -0.0004 S23: 0.0571 REMARK 3 S31: -0.1022 S32: 0.0554 S33: 0.1572 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: {A|770 - 962} REMARK 3 ORIGIN FOR THE GROUP (A): -1.7988 8.2207 16.5384 REMARK 3 T TENSOR REMARK 3 T11: -0.2887 T22: 0.0386 REMARK 3 T33: -0.1022 T12: 0.1544 REMARK 3 T13: -0.0544 T23: -0.0465 REMARK 3 L TENSOR REMARK 3 L11: 0.8354 L22: 1.4625 REMARK 3 L33: 5.9500 L12: -1.2229 REMARK 3 L13: -1.9878 L23: 1.1617 REMARK 3 S TENSOR REMARK 3 S11: 0.2147 S12: 0.5698 S13: 0.0838 REMARK 3 S21: -0.5378 S22: -0.2785 S23: 0.2170 REMARK 3 S31: 0.3068 S32: -0.1609 S33: 0.0638 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: {B|563 - 642} REMARK 3 ORIGIN FOR THE GROUP (A): 21.8650 -8.9531 60.9300 REMARK 3 T TENSOR REMARK 3 T11: -0.1001 T22: 0.0080 REMARK 3 T33: -0.1047 T12: 0.1470 REMARK 3 T13: -0.1179 T23: 0.0480 REMARK 3 L TENSOR REMARK 3 L11: 0.8650 L22: 3.5312 REMARK 3 L33: 8.1843 L12: 0.0824 REMARK 3 L13: -0.9888 L23: -2.9242 REMARK 3 S TENSOR REMARK 3 S11: -0.1074 S12: -0.5916 S13: -0.0480 REMARK 3 S21: 0.6015 S22: 0.2749 S23: -0.4052 REMARK 3 S31: 0.4074 S32: 0.3286 S33: -0.1675 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: {B|643 - 769} REMARK 3 ORIGIN FOR THE GROUP (A): 27.7187 -12.2558 42.5238 REMARK 3 T TENSOR REMARK 3 T11: -0.3006 T22: -0.1875 REMARK 3 T33: 0.1826 T12: 0.0029 REMARK 3 T13: -0.0284 T23: -0.0030 REMARK 3 L TENSOR REMARK 3 L11: 7.4358 L22: 2.9027 REMARK 3 L33: 3.8948 L12: -0.7223 REMARK 3 L13: -0.5979 L23: 0.4978 REMARK 3 S TENSOR REMARK 3 S11: -0.0631 S12: -0.0666 S13: -0.3766 REMARK 3 S21: 0.1587 S22: -0.0485 S23: -0.0528 REMARK 3 S31: 0.1185 S32: 0.0325 S33: 0.1115 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: {B|770 - 962} REMARK 3 ORIGIN FOR THE GROUP (A): 30.8437 -9.7651 15.4381 REMARK 3 T TENSOR REMARK 3 T11: -0.2718 T22: 0.1034 REMARK 3 T33: -0.1801 T12: 0.1357 REMARK 3 T13: 0.0378 T23: -0.0645 REMARK 3 L TENSOR REMARK 3 L11: 0.3222 L22: 1.6765 REMARK 3 L33: 6.7054 L12: -1.3242 REMARK 3 L13: 1.5736 L23: -1.1759 REMARK 3 S TENSOR REMARK 3 S11: 0.3083 S12: 0.5333 S13: -0.2745 REMARK 3 S21: -0.5325 S22: -0.2902 S23: -0.1252 REMARK 3 S31: -0.2843 S32: 0.1191 S33: -0.0181 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4Z7G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-APR-15. REMARK 100 THE DEPOSITION ID IS D_1000208751. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32479 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 85.330 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 1.47500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 3P23 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: APO-HIRE1 WAS CRYSTALLIZED BY HANGING REMARK 280 -DROP VAPOR DIFFUSION BY MIXING IRE1 (AT 2 MG/ML) WITH RESERVOIR REMARK 280 SOLUTION CONTAINING 18-20% PEG3350, 0.2 M SODIUM MALONATE AND REMARK 280 0.1 BIS-TRISPROPANE (PH 6.5) IN A 1:1 RATIO, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 39.48550 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 713 REMARK 465 LEU A 714 REMARK 465 CYS A 715 REMARK 465 LYS A 716 REMARK 465 LYS A 717 REMARK 465 LEU A 718 REMARK 465 ALA A 719 REMARK 465 VAL A 720 REMARK 465 GLY A 721 REMARK 465 ARG A 722 REMARK 465 HIS A 723 REMARK 465 SER A 724 REMARK 465 PHE A 725 REMARK 465 SER A 726 REMARK 465 ARG A 727 REMARK 465 ARG A 728 REMARK 465 SER A 729 REMARK 465 GLY A 730 REMARK 465 VAL A 731 REMARK 465 SER A 744 REMARK 465 GLU A 745 REMARK 465 ASP A 746 REMARK 465 CYS A 747 REMARK 465 LYS A 748 REMARK 465 GLU A 749 REMARK 465 ASN A 750 REMARK 465 LEU A 886 REMARK 465 ARG A 887 REMARK 465 LYS A 888 REMARK 465 PHE A 889 REMARK 465 ARG A 890 REMARK 465 THR A 891 REMARK 465 TYR A 892 REMARK 465 LYS A 893 REMARK 465 GLY A 894 REMARK 465 GLY A 895 REMARK 465 GLU A 964 REMARK 465 PRO A 965 REMARK 465 PRO A 966 REMARK 465 GLU A 967 REMARK 465 PRO A 968 REMARK 465 GLN A 969 REMARK 465 PRO A 970 REMARK 465 PRO A 971 REMARK 465 VAL A 972 REMARK 465 THR A 973 REMARK 465 PRO A 974 REMARK 465 ASP A 975 REMARK 465 ALA A 976 REMARK 465 LEU A 977 REMARK 465 GLY B 713 REMARK 465 LEU B 714 REMARK 465 CYS B 715 REMARK 465 LYS B 716 REMARK 465 LYS B 717 REMARK 465 LEU B 718 REMARK 465 ALA B 719 REMARK 465 VAL B 720 REMARK 465 GLY B 721 REMARK 465 ARG B 722 REMARK 465 HIS B 723 REMARK 465 SER B 724 REMARK 465 PHE B 725 REMARK 465 SER B 726 REMARK 465 ARG B 727 REMARK 465 ARG B 728 REMARK 465 SER B 729 REMARK 465 GLY B 730 REMARK 465 GLU B 745 REMARK 465 ASP B 746 REMARK 465 CYS B 747 REMARK 465 LYS B 748 REMARK 465 GLU B 749 REMARK 465 ASN B 750 REMARK 465 HIS B 963 REMARK 465 GLU B 964 REMARK 465 PRO B 965 REMARK 465 PRO B 966 REMARK 465 GLU B 967 REMARK 465 PRO B 968 REMARK 465 GLN B 969 REMARK 465 PRO B 970 REMARK 465 PRO B 971 REMARK 465 VAL B 972 REMARK 465 THR B 973 REMARK 465 PRO B 974 REMARK 465 ASP B 975 REMARK 465 ALA B 976 REMARK 465 LEU B 977 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 566 64.50 -118.84 REMARK 500 PHE A 629 -70.16 -102.63 REMARK 500 ASP A 634 -167.78 -112.32 REMARK 500 LYS A 656 55.90 -94.14 REMARK 500 ARG A 687 -10.39 72.24 REMARK 500 ASP A 688 36.76 -142.29 REMARK 500 ASP A 711 101.03 43.48 REMARK 500 GLU A 735 118.59 -35.23 REMARK 500 GLU A 770 42.26 85.77 REMARK 500 GLU A 850 95.65 67.36 REMARK 500 ARG A 867 -104.90 65.64 REMARK 500 MET A 872 -56.43 69.66 REMARK 500 HIS A 910 33.31 -97.94 REMARK 500 LEU A 922 -76.22 -82.00 REMARK 500 VAL B 566 64.04 -119.14 REMARK 500 PHE B 629 -70.14 -102.95 REMARK 500 LYS B 656 42.18 -88.65 REMARK 500 ARG B 687 -11.47 72.73 REMARK 500 ASP B 688 36.23 -141.09 REMARK 500 ASP B 711 92.04 45.35 REMARK 500 GLU B 735 118.65 -36.38 REMARK 500 GLU B 770 45.20 84.89 REMARK 500 GLU B 852 145.63 -172.48 REMARK 500 SER B 853 -159.78 -131.17 REMARK 500 ARG B 864 99.49 -54.78 REMARK 500 ARG B 867 -103.97 59.97 REMARK 500 MET B 872 -56.84 71.35 REMARK 500 ASN B 877 42.74 -107.46 REMARK 500 LYS B 888 -71.08 -97.69 REMARK 500 LEU B 922 -73.50 -109.53 REMARK 500 TYR B 961 -50.36 -128.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1001 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 620 O REMARK 620 2 HIS A 622 O 86.0 REMARK 620 3 VAL A 625 O 97.5 86.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B1001 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 620 O REMARK 620 2 HIS B 622 O 87.0 REMARK 620 3 VAL B 625 O 98.5 88.6 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 1001 DBREF 4Z7G A 562 977 UNP O75460 ERN1_HUMAN 562 977 DBREF 4Z7G B 562 977 UNP O75460 ERN1_HUMAN 562 977 SEQRES 1 A 416 SER VAL VAL ILE VAL GLY LYS ILE SER PHE CYS PRO LYS SEQRES 2 A 416 ASP VAL LEU GLY HIS GLY ALA GLU GLY THR ILE VAL TYR SEQRES 3 A 416 ARG GLY MET PHE ASP ASN ARG ASP VAL ALA VAL LYS ARG SEQRES 4 A 416 ILE LEU PRO GLU CYS PHE SER PHE ALA ASP ARG GLU VAL SEQRES 5 A 416 GLN LEU LEU ARG GLU SER ASP GLU HIS PRO ASN VAL ILE SEQRES 6 A 416 ARG TYR PHE CYS THR GLU LYS ASP ARG GLN PHE GLN TYR SEQRES 7 A 416 ILE ALA ILE GLU LEU CYS ALA ALA THR LEU GLN GLU TYR SEQRES 8 A 416 VAL GLU GLN LYS ASP PHE ALA HIS LEU GLY LEU GLU PRO SEQRES 9 A 416 ILE THR LEU LEU GLN GLN THR THR SER GLY LEU ALA HIS SEQRES 10 A 416 LEU HIS SER LEU ASN ILE VAL HIS ARG ASP LEU LYS PRO SEQRES 11 A 416 HIS ASN ILE LEU ILE SER MET PRO ASN ALA HIS GLY LYS SEQRES 12 A 416 ILE LYS ALA MET ILE SER ASP PHE GLY LEU CYS LYS LYS SEQRES 13 A 416 LEU ALA VAL GLY ARG HIS SER PHE SER ARG ARG SER GLY SEQRES 14 A 416 VAL PRO GLY THR GLU GLY TRP ILE ALA PRO GLU MET LEU SEQRES 15 A 416 SER GLU ASP CYS LYS GLU ASN PRO THR TYR THR VAL ASP SEQRES 16 A 416 ILE PHE SER ALA GLY CYS VAL PHE TYR TYR VAL ILE SER SEQRES 17 A 416 GLU GLY SER HIS PRO PHE GLY LYS SER LEU GLN ARG GLN SEQRES 18 A 416 ALA ASN ILE LEU LEU GLY ALA CYS SER LEU ASP CYS LEU SEQRES 19 A 416 HIS PRO GLU LYS HIS GLU ASP VAL ILE ALA ARG GLU LEU SEQRES 20 A 416 ILE GLU LYS MET ILE ALA MET ASP PRO GLN LYS ARG PRO SEQRES 21 A 416 SER ALA LYS HIS VAL LEU LYS HIS PRO PHE PHE TRP SER SEQRES 22 A 416 LEU GLU LYS GLN LEU GLN PHE PHE GLN ASP VAL SER ASP SEQRES 23 A 416 ARG ILE GLU LYS GLU SER LEU ASP GLY PRO ILE VAL LYS SEQRES 24 A 416 GLN LEU GLU ARG GLY GLY ARG ALA VAL VAL LYS MET ASP SEQRES 25 A 416 TRP ARG GLU ASN ILE THR VAL PRO LEU GLN THR ASP LEU SEQRES 26 A 416 ARG LYS PHE ARG THR TYR LYS GLY GLY SER VAL ARG ASP SEQRES 27 A 416 LEU LEU ARG ALA MET ARG ASN LYS LYS HIS HIS TYR ARG SEQRES 28 A 416 GLU LEU PRO ALA GLU VAL ARG GLU THR LEU GLY SER LEU SEQRES 29 A 416 PRO ASP ASP PHE VAL CYS TYR PHE THR SER ARG PHE PRO SEQRES 30 A 416 HIS LEU LEU ALA HIS THR TYR ARG ALA MET GLU LEU CYS SEQRES 31 A 416 SER HIS GLU ARG LEU PHE GLN PRO TYR TYR PHE HIS GLU SEQRES 32 A 416 PRO PRO GLU PRO GLN PRO PRO VAL THR PRO ASP ALA LEU SEQRES 1 B 416 SER VAL VAL ILE VAL GLY LYS ILE SER PHE CYS PRO LYS SEQRES 2 B 416 ASP VAL LEU GLY HIS GLY ALA GLU GLY THR ILE VAL TYR SEQRES 3 B 416 ARG GLY MET PHE ASP ASN ARG ASP VAL ALA VAL LYS ARG SEQRES 4 B 416 ILE LEU PRO GLU CYS PHE SER PHE ALA ASP ARG GLU VAL SEQRES 5 B 416 GLN LEU LEU ARG GLU SER ASP GLU HIS PRO ASN VAL ILE SEQRES 6 B 416 ARG TYR PHE CYS THR GLU LYS ASP ARG GLN PHE GLN TYR SEQRES 7 B 416 ILE ALA ILE GLU LEU CYS ALA ALA THR LEU GLN GLU TYR SEQRES 8 B 416 VAL GLU GLN LYS ASP PHE ALA HIS LEU GLY LEU GLU PRO SEQRES 9 B 416 ILE THR LEU LEU GLN GLN THR THR SER GLY LEU ALA HIS SEQRES 10 B 416 LEU HIS SER LEU ASN ILE VAL HIS ARG ASP LEU LYS PRO SEQRES 11 B 416 HIS ASN ILE LEU ILE SER MET PRO ASN ALA HIS GLY LYS SEQRES 12 B 416 ILE LYS ALA MET ILE SER ASP PHE GLY LEU CYS LYS LYS SEQRES 13 B 416 LEU ALA VAL GLY ARG HIS SER PHE SER ARG ARG SER GLY SEQRES 14 B 416 VAL PRO GLY THR GLU GLY TRP ILE ALA PRO GLU MET LEU SEQRES 15 B 416 SER GLU ASP CYS LYS GLU ASN PRO THR TYR THR VAL ASP SEQRES 16 B 416 ILE PHE SER ALA GLY CYS VAL PHE TYR TYR VAL ILE SER SEQRES 17 B 416 GLU GLY SER HIS PRO PHE GLY LYS SER LEU GLN ARG GLN SEQRES 18 B 416 ALA ASN ILE LEU LEU GLY ALA CYS SER LEU ASP CYS LEU SEQRES 19 B 416 HIS PRO GLU LYS HIS GLU ASP VAL ILE ALA ARG GLU LEU SEQRES 20 B 416 ILE GLU LYS MET ILE ALA MET ASP PRO GLN LYS ARG PRO SEQRES 21 B 416 SER ALA LYS HIS VAL LEU LYS HIS PRO PHE PHE TRP SER SEQRES 22 B 416 LEU GLU LYS GLN LEU GLN PHE PHE GLN ASP VAL SER ASP SEQRES 23 B 416 ARG ILE GLU LYS GLU SER LEU ASP GLY PRO ILE VAL LYS SEQRES 24 B 416 GLN LEU GLU ARG GLY GLY ARG ALA VAL VAL LYS MET ASP SEQRES 25 B 416 TRP ARG GLU ASN ILE THR VAL PRO LEU GLN THR ASP LEU SEQRES 26 B 416 ARG LYS PHE ARG THR TYR LYS GLY GLY SER VAL ARG ASP SEQRES 27 B 416 LEU LEU ARG ALA MET ARG ASN LYS LYS HIS HIS TYR ARG SEQRES 28 B 416 GLU LEU PRO ALA GLU VAL ARG GLU THR LEU GLY SER LEU SEQRES 29 B 416 PRO ASP ASP PHE VAL CYS TYR PHE THR SER ARG PHE PRO SEQRES 30 B 416 HIS LEU LEU ALA HIS THR TYR ARG ALA MET GLU LEU CYS SEQRES 31 B 416 SER HIS GLU ARG LEU PHE GLN PRO TYR TYR PHE HIS GLU SEQRES 32 B 416 PRO PRO GLU PRO GLN PRO PRO VAL THR PRO ASP ALA LEU HET NA A1001 1 HET NA B1001 1 HETNAM NA SODIUM ION FORMUL 3 NA 2(NA 1+) FORMUL 5 HOH *15(H2 O) HELIX 1 AA1 LEU A 602 GLU A 604 5 3 HELIX 2 AA2 CYS A 605 ASP A 620 1 16 HELIX 3 AA3 LEU A 649 GLN A 655 1 7 HELIX 4 AA4 PHE A 658 GLY A 662 5 5 HELIX 5 AA5 GLU A 664 LEU A 682 1 19 HELIX 6 AA6 ALA A 739 LEU A 743 5 5 HELIX 7 AA7 TYR A 753 GLU A 770 1 18 HELIX 8 AA8 GLN A 780 GLY A 788 1 9 HELIX 9 AA9 LYS A 799 ILE A 813 1 15 HELIX 10 AB1 ASP A 816 ARG A 820 5 5 HELIX 11 AB2 SER A 822 HIS A 829 1 8 HELIX 12 AB3 PRO A 830 TRP A 833 5 4 HELIX 13 AB4 SER A 834 ILE A 849 1 16 HELIX 14 AB5 GLY A 856 ARG A 864 1 9 HELIX 15 AB6 ARG A 867 LYS A 871 5 5 HELIX 16 AB7 VAL A 897 HIS A 910 1 14 HELIX 17 AB8 PRO A 915 GLY A 923 1 9 HELIX 18 AB9 PRO A 926 THR A 934 1 9 HELIX 19 AC1 HIS A 939 MET A 948 1 10 HELIX 20 AC2 GLU A 949 SER A 952 5 4 HELIX 21 AC3 GLU A 954 GLN A 958 5 5 HELIX 22 AC4 LEU B 602 GLU B 604 5 3 HELIX 23 AC5 CYS B 605 ASP B 620 1 16 HELIX 24 AC6 LEU B 649 GLN B 655 1 7 HELIX 25 AC7 ASP B 657 GLY B 662 5 6 HELIX 26 AC8 GLU B 664 LEU B 682 1 19 HELIX 27 AC9 ALA B 739 LEU B 743 5 5 HELIX 28 AD1 TYR B 753 GLU B 770 1 18 HELIX 29 AD2 GLN B 780 GLY B 788 1 9 HELIX 30 AD3 LYS B 799 ILE B 813 1 15 HELIX 31 AD4 ASP B 816 ARG B 820 5 5 HELIX 32 AD5 SER B 822 HIS B 829 1 8 HELIX 33 AD6 PRO B 830 TRP B 833 5 4 HELIX 34 AD7 SER B 834 GLU B 850 1 17 HELIX 35 AD8 GLY B 856 ARG B 864 1 9 HELIX 36 AD9 PRO B 881 LEU B 886 1 6 HELIX 37 AE1 SER B 896 HIS B 910 1 15 HELIX 38 AE2 TYR B 911 LEU B 914 5 4 HELIX 39 AE3 PRO B 915 GLY B 923 1 9 HELIX 40 AE4 PRO B 926 PHE B 937 1 12 HELIX 41 AE5 HIS B 939 MET B 948 1 10 HELIX 42 AE6 GLU B 949 SER B 952 5 4 HELIX 43 AE7 GLU B 954 GLN B 958 5 5 SHEET 1 AA1 6 VAL A 564 VAL A 566 0 SHEET 2 AA1 6 ILE A 569 HIS A 579 -1 O ILE A 569 N VAL A 566 SHEET 3 AA1 6 ILE A 585 PHE A 591 -1 O VAL A 586 N LEU A 577 SHEET 4 AA1 6 ARG A 594 ILE A 601 -1 O VAL A 598 N TYR A 587 SHEET 5 AA1 6 GLN A 638 GLU A 643 -1 O GLN A 638 N ILE A 601 SHEET 6 AA1 6 TYR A 628 LYS A 633 -1 N CYS A 630 O ALA A 641 SHEET 1 AA2 3 CYS A 645 THR A 648 0 SHEET 2 AA2 3 ILE A 694 SER A 697 -1 O ILE A 696 N ALA A 647 SHEET 3 AA2 3 ALA A 707 ILE A 709 -1 O MET A 708 N LEU A 695 SHEET 1 AA3 6 VAL B 564 VAL B 566 0 SHEET 2 AA3 6 ILE B 569 HIS B 579 -1 O ILE B 569 N VAL B 566 SHEET 3 AA3 6 ILE B 585 PHE B 591 -1 O VAL B 586 N LEU B 577 SHEET 4 AA3 6 ARG B 594 ILE B 601 -1 O VAL B 598 N TYR B 587 SHEET 5 AA3 6 GLN B 638 GLU B 643 -1 O GLN B 638 N ILE B 601 SHEET 6 AA3 6 TYR B 628 LYS B 633 -1 N CYS B 630 O ALA B 641 SHEET 1 AA4 3 CYS B 645 THR B 648 0 SHEET 2 AA4 3 ILE B 694 SER B 697 -1 O ILE B 696 N ALA B 647 SHEET 3 AA4 3 ALA B 707 ILE B 709 -1 O MET B 708 N LEU B 695 LINK O ASP A 620 NA NA A1001 1555 1555 2.34 LINK O HIS A 622 NA NA A1001 1555 1555 2.34 LINK O VAL A 625 NA NA A1001 1555 1555 2.37 LINK O ASP B 620 NA NA B1001 1555 1555 2.35 LINK O HIS B 622 NA NA B1001 1555 1555 2.30 LINK O VAL B 625 NA NA B1001 1555 1555 2.35 CISPEP 1 GLY A 567 LYS A 568 0 4.78 CISPEP 2 GLU A 850 LYS A 851 0 0.24 CISPEP 3 GLY A 866 ARG A 867 0 -0.50 CISPEP 4 GLY A 923 SER A 924 0 4.66 CISPEP 5 LEU A 925 PRO A 926 0 2.19 CISPEP 6 THR A 934 SER A 935 0 6.76 CISPEP 7 SER B 562 VAL B 563 0 -1.01 CISPEP 8 GLY B 567 LYS B 568 0 4.94 CISPEP 9 GLU B 850 LYS B 851 0 0.66 CISPEP 10 LEU B 854 ASP B 855 0 6.91 CISPEP 11 GLY B 866 ARG B 867 0 -1.07 CISPEP 12 ARG B 890 THR B 891 0 4.48 CISPEP 13 GLY B 923 SER B 924 0 4.87 CISPEP 14 LEU B 925 PRO B 926 0 6.31 SITE 1 AC1 3 ASP A 620 HIS A 622 VAL A 625 SITE 1 AC2 3 ASP B 620 HIS B 622 VAL B 625 CRYST1 79.401 78.971 86.045 90.00 97.41 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012594 0.000000 0.001638 0.00000 SCALE2 0.000000 0.012663 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011720 0.00000