PDB Short entry for 4ZR1 HEADER OXIDOREDUCTASE 11-MAY-15 4ZR1 TITLE HYDROXYLASE DOMAIN OF SCS7P COMPND MOL_ID: 1; COMPND 2 MOLECULE: CERAMIDE VERY LONG CHAIN FATTY ACID HYDROXYLASE SCS7; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 96-384; COMPND 5 SYNONYM: CERAMIDE VLCFA HYDROXYLASE SCS7,SUPPRESSOR OF CALCIUM COMPND 6 SENSITIVITY 7; COMPND 7 EC: 1.-.-.-; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 3 S288C); SOURCE 4 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 5 ORGANISM_TAXID: 559292; SOURCE 6 STRAIN: ATCC 204508 / S288C; SOURCE 7 GENE: SCS7, FAH1, YMR272C, YM8156.14C; SOURCE 8 EXPRESSION_SYSTEM: SACCHAROMYCES CEREVISIAE; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 4932; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BJ5460; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PSGP46 KEYWDS FATTY ACID HYDROXYLASE, SCS7P, FAH1P, FA2H HOMOLOG, STRUCTURAL KEYWDS 2 GENOMICS, PSI-BIOLOGY, MEMBRANE PROTEIN STRUCTURAL BIOLOGY KEYWDS 3 CONSORTIUM, MPSBC, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR G.ZHU,M.KOSZELAK-ROSENBLUM,M.G.MALKOWSKI,MEMBRANE PROTEIN STRUCTURAL AUTHOR 2 BIOLOGY CONSORTIUM (MPSBC) REVDAT 7 06-MAR-24 4ZR1 1 HETSYN REVDAT 6 29-JUL-20 4ZR1 1 COMPND REMARK HETNAM SITE REVDAT 5 25-DEC-19 4ZR1 1 REMARK REVDAT 4 06-SEP-17 4ZR1 1 JRNL REMARK REVDAT 3 23-DEC-15 4ZR1 1 JRNL REVDAT 2 18-NOV-15 4ZR1 1 JRNL REVDAT 1 29-JUL-15 4ZR1 0 JRNL AUTH G.ZHU,M.KOSZELAK-ROSENBLUM,S.M.CONNELLY,M.E.DUMONT, JRNL AUTH 2 M.G.MALKOWSKI JRNL TITL THE CRYSTAL STRUCTURE OF AN INTEGRAL MEMBRANE FATTY ACID JRNL TITL 2 ALPHA-HYDROXYLASE. JRNL REF J.BIOL.CHEM. V. 290 29820 2015 JRNL REFN ESSN 1083-351X JRNL PMID 26515067 JRNL DOI 10.1074/JBC.M115.680124 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.3_1479 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.79 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 42170 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 2133 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.7995 - 6.4093 1.00 2831 123 0.1997 0.2142 REMARK 3 2 6.4093 - 5.0891 1.00 2728 140 0.1954 0.2395 REMARK 3 3 5.0891 - 4.4463 1.00 2718 143 0.1704 0.2288 REMARK 3 4 4.4463 - 4.0400 1.00 2701 145 0.1859 0.1983 REMARK 3 5 4.0400 - 3.7506 1.00 2691 141 0.1823 0.2476 REMARK 3 6 3.7506 - 3.5295 1.00 2681 148 0.1801 0.2387 REMARK 3 7 3.5295 - 3.3528 1.00 2702 140 0.1959 0.2248 REMARK 3 8 3.3528 - 3.2069 1.00 2669 128 0.1972 0.2631 REMARK 3 9 3.2069 - 3.0835 1.00 2676 143 0.2199 0.2656 REMARK 3 10 3.0835 - 2.9771 1.00 2685 139 0.2172 0.2689 REMARK 3 11 2.9771 - 2.8840 1.00 2668 152 0.2301 0.2890 REMARK 3 12 2.8840 - 2.8016 1.00 2666 165 0.2473 0.3024 REMARK 3 13 2.8016 - 2.7278 1.00 2636 142 0.2833 0.3468 REMARK 3 14 2.7278 - 2.6613 0.98 2610 155 0.3033 0.3392 REMARK 3 15 2.6613 - 2.6008 0.88 2375 129 0.3298 0.3493 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.400 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.380 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 5033 REMARK 3 ANGLE : 1.102 6785 REMARK 3 CHIRALITY : 0.043 663 REMARK 3 PLANARITY : 0.007 803 REMARK 3 DIHEDRAL : 14.874 1989 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 117 THROUGH 390 ) REMARK 3 ORIGIN FOR THE GROUP (A): 76.2267 42.7794 126.9834 REMARK 3 T TENSOR REMARK 3 T11: 0.4646 T22: 0.7211 REMARK 3 T33: 0.6679 T12: 0.0165 REMARK 3 T13: 0.1299 T23: 0.0376 REMARK 3 L TENSOR REMARK 3 L11: 2.5826 L22: 0.8599 REMARK 3 L33: 0.1080 L12: 0.0434 REMARK 3 L13: -0.0263 L23: 0.1721 REMARK 3 S TENSOR REMARK 3 S11: -0.1252 S12: 0.0673 S13: -0.6698 REMARK 3 S21: 0.0706 S22: 0.0425 S23: 0.1073 REMARK 3 S31: 0.1007 S32: -0.1537 S33: 0.0012 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 117 THROUGH 391 ) REMARK 3 ORIGIN FOR THE GROUP (A): 63.0608 75.8285 125.0379 REMARK 3 T TENSOR REMARK 3 T11: 0.5385 T22: 0.6651 REMARK 3 T33: 0.5027 T12: 0.0687 REMARK 3 T13: 0.0912 T23: 0.0918 REMARK 3 L TENSOR REMARK 3 L11: 1.6465 L22: 0.9999 REMARK 3 L33: 1.0532 L12: 0.3965 REMARK 3 L13: 0.1596 L23: -0.0016 REMARK 3 S TENSOR REMARK 3 S11: 0.0705 S12: 0.2409 S13: 0.5013 REMARK 3 S21: 0.1368 S22: 0.1181 S23: 0.1056 REMARK 3 S31: -0.5451 S32: 0.1221 S33: -0.0008 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4ZR1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-MAY-15. REMARK 100 THE DEPOSITION ID IS D_1000209138. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.25 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42246 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.65 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 1.64600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 75.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG2000, 0.1M SODIUM CITRATE, PH REMARK 280 5.6, 50MM (NH4)2HPO4, BATCH MODE, TEMPERATURE 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X,-Y+1/2,Z REMARK 290 15555 -X+1/2,Y,-Z REMARK 290 16555 X,-Y,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z,-X,-Y+1/2 REMARK 290 19555 -Z,-X+1/2,Y REMARK 290 20555 -Z+1/2,X,-Y REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z,-X REMARK 290 23555 Y,-Z,-X+1/2 REMARK 290 24555 -Y,-Z+1/2,X REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 101.38100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 101.38100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 101.38100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 101.38100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 101.38100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 101.38100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 101.38100 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 101.38100 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 101.38100 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 101.38100 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 101.38100 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 101.38100 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 101.38100 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 101.38100 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 101.38100 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 101.38100 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 101.38100 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 101.38100 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 101.38100 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 101.38100 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 101.38100 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 101.38100 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 101.38100 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 101.38100 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 101.38100 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 101.38100 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 101.38100 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 101.38100 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 101.38100 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 101.38100 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 101.38100 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 101.38100 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 101.38100 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 101.38100 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 101.38100 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 101.38100 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 95 REMARK 465 ALA A 96 REMARK 465 ARG A 97 REMARK 465 LEU A 98 REMARK 465 LEU A 99 REMARK 465 THR A 100 REMARK 465 ASN A 101 REMARK 465 LYS A 102 REMARK 465 ASN A 103 REMARK 465 HIS A 104 REMARK 465 LYS A 105 REMARK 465 VAL A 106 REMARK 465 GLU A 107 REMARK 465 VAL A 108 REMARK 465 GLN A 109 REMARK 465 LEU A 110 REMARK 465 SER A 111 REMARK 465 ALA A 112 REMARK 465 ASP A 113 REMARK 465 GLY A 114 REMARK 465 THR A 115 REMARK 465 GLU A 116 REMARK 465 PHE A 391 REMARK 465 GLN A 392 REMARK 465 MET B 95 REMARK 465 ALA B 96 REMARK 465 ARG B 97 REMARK 465 LEU B 98 REMARK 465 LEU B 99 REMARK 465 THR B 100 REMARK 465 ASN B 101 REMARK 465 LYS B 102 REMARK 465 ASN B 103 REMARK 465 HIS B 104 REMARK 465 LYS B 105 REMARK 465 VAL B 106 REMARK 465 GLU B 107 REMARK 465 VAL B 108 REMARK 465 GLN B 109 REMARK 465 LEU B 110 REMARK 465 SER B 111 REMARK 465 ALA B 112 REMARK 465 ASP B 113 REMARK 465 GLY B 114 REMARK 465 THR B 115 REMARK 465 GLU B 116 REMARK 465 GLN B 392 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 117 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 332 O2 BOG A 405 2.14 REMARK 500 OD2 ASP B 118 OG1 THR B 120 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 147 -96.40 -113.91 REMARK 500 ASN A 188 -153.41 -106.38 REMARK 500 HIS A 249 41.58 -108.04 REMARK 500 ASP A 251 -112.73 44.59 REMARK 500 HIS A 268 -30.39 -167.66 REMARK 500 LEU A 281 -64.29 -106.48 REMARK 500 LYS A 351 -52.53 -147.58 REMARK 500 LEU A 372 79.27 -107.46 REMARK 500 MET A 381 72.23 -113.03 REMARK 500 PRO B 127 -172.23 -67.30 REMARK 500 PHE B 147 -120.06 -91.54 REMARK 500 ASN B 188 -155.23 -120.02 REMARK 500 LEU B 247 -61.53 -92.82 REMARK 500 HIS B 249 47.87 -109.98 REMARK 500 ASP B 251 -106.33 41.67 REMARK 500 HIS B 268 -33.09 -171.46 REMARK 500 LEU B 281 -63.07 -103.29 REMARK 500 LYS B 351 -51.34 -125.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 244 NE2 REMARK 620 2 HIS A 249 NE2 96.4 REMARK 620 3 HIS A 268 NE2 92.2 101.2 REMARK 620 4 HIS A 272 NE2 167.2 95.5 90.2 REMARK 620 5 HIS A 348 NE2 88.3 96.5 162.1 85.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 271 NE2 REMARK 620 2 HIS A 326 NE2 79.4 REMARK 620 3 HIS A 330 NE2 94.2 105.8 REMARK 620 4 HIS A 345 NE2 170.9 91.7 90.3 REMARK 620 5 HIS A 349 NE2 98.2 162.7 91.5 89.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 244 NE2 REMARK 620 2 HIS B 249 NE2 96.3 REMARK 620 3 HIS B 268 NE2 88.1 101.1 REMARK 620 4 HIS B 272 NE2 163.5 100.2 88.7 REMARK 620 5 HIS B 348 NE2 80.9 100.0 157.1 96.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 271 NE2 REMARK 620 2 HIS B 326 NE2 79.0 REMARK 620 3 HIS B 330 NE2 91.4 111.7 REMARK 620 4 HIS B 345 NE2 161.8 85.6 103.2 REMARK 620 5 HIS B 349 NE2 91.9 154.9 91.6 98.3 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MPSBC-SCS7P RELATED DB: TARGETTRACK DBREF 4ZR1 A 96 384 UNP Q03529 SCS7_YEAST 96 384 DBREF 4ZR1 B 96 384 UNP Q03529 SCS7_YEAST 96 384 SEQADV 4ZR1 MET A 95 UNP Q03529 INITIATING METHIONINE SEQADV 4ZR1 SER A 385 UNP Q03529 EXPRESSION TAG SEQADV 4ZR1 GLY A 386 UNP Q03529 EXPRESSION TAG SEQADV 4ZR1 LEU A 387 UNP Q03529 EXPRESSION TAG SEQADV 4ZR1 GLU A 388 UNP Q03529 EXPRESSION TAG SEQADV 4ZR1 VAL A 389 UNP Q03529 EXPRESSION TAG SEQADV 4ZR1 LEU A 390 UNP Q03529 EXPRESSION TAG SEQADV 4ZR1 PHE A 391 UNP Q03529 EXPRESSION TAG SEQADV 4ZR1 GLN A 392 UNP Q03529 EXPRESSION TAG SEQADV 4ZR1 MET B 95 UNP Q03529 INITIATING METHIONINE SEQADV 4ZR1 SER B 385 UNP Q03529 EXPRESSION TAG SEQADV 4ZR1 GLY B 386 UNP Q03529 EXPRESSION TAG SEQADV 4ZR1 LEU B 387 UNP Q03529 EXPRESSION TAG SEQADV 4ZR1 GLU B 388 UNP Q03529 EXPRESSION TAG SEQADV 4ZR1 VAL B 389 UNP Q03529 EXPRESSION TAG SEQADV 4ZR1 LEU B 390 UNP Q03529 EXPRESSION TAG SEQADV 4ZR1 PHE B 391 UNP Q03529 EXPRESSION TAG SEQADV 4ZR1 GLN B 392 UNP Q03529 EXPRESSION TAG SEQRES 1 A 298 MET ALA ARG LEU LEU THR ASN LYS ASN HIS LYS VAL GLU SEQRES 2 A 298 VAL GLN LEU SER ALA ASP GLY THR GLU PHE ASP SER THR SEQRES 3 A 298 THR PHE VAL LYS GLU LEU PRO ALA GLU GLU LYS LEU SER SEQRES 4 A 298 ILE ALA THR ASP TYR SER ASN ASP TYR LYS LYS HIS LYS SEQRES 5 A 298 PHE LEU ASP LEU ASN ARG PRO LEU LEU MET GLN ILE LEU SEQRES 6 A 298 ARG SER ASP PHE LYS LYS ASP PHE TYR VAL ASP GLN ILE SEQRES 7 A 298 HIS ARG PRO ARG HIS TYR GLY LYS GLY SER ALA PRO LEU SEQRES 8 A 298 PHE GLY ASN PHE LEU GLU PRO LEU THR LYS THR ALA TRP SEQRES 9 A 298 TRP VAL VAL PRO VAL ALA TRP LEU PRO VAL VAL VAL TYR SEQRES 10 A 298 HIS MET GLY VAL ALA LEU LYS ASN MET ASN GLN LEU PHE SEQRES 11 A 298 ALA CYS PHE LEU PHE CYS VAL GLY VAL PHE VAL TRP THR SEQRES 12 A 298 LEU ILE GLU TYR GLY LEU HIS ARG PHE LEU PHE HIS PHE SEQRES 13 A 298 ASP ASP TRP LEU PRO GLU SER ASN ILE ALA PHE ALA THR SEQRES 14 A 298 HIS PHE LEU LEU HIS GLY CYS HIS HIS TYR LEU PRO MET SEQRES 15 A 298 ASP LYS TYR ARG LEU VAL MET PRO PRO THR LEU PHE VAL SEQRES 16 A 298 ILE LEU CYS ALA PRO PHE TYR LYS LEU VAL PHE ALA LEU SEQRES 17 A 298 LEU PRO LEU TYR TRP ALA TYR ALA GLY PHE ALA GLY GLY SEQRES 18 A 298 LEU PHE GLY TYR VAL CYS TYR ASP GLU CYS HIS PHE PHE SEQRES 19 A 298 LEU HIS HIS SER LYS LEU PRO PRO PHE MET ARG LYS LEU SEQRES 20 A 298 LYS LYS TYR HIS LEU GLU HIS HIS TYR LYS ASN TYR GLN SEQRES 21 A 298 LEU GLY PHE GLY VAL THR SER TRP PHE TRP ASP GLU VAL SEQRES 22 A 298 PHE GLY THR TYR LEU GLY PRO ASP ALA PRO LEU SER LYS SEQRES 23 A 298 MET LYS TYR GLU SER GLY LEU GLU VAL LEU PHE GLN SEQRES 1 B 298 MET ALA ARG LEU LEU THR ASN LYS ASN HIS LYS VAL GLU SEQRES 2 B 298 VAL GLN LEU SER ALA ASP GLY THR GLU PHE ASP SER THR SEQRES 3 B 298 THR PHE VAL LYS GLU LEU PRO ALA GLU GLU LYS LEU SER SEQRES 4 B 298 ILE ALA THR ASP TYR SER ASN ASP TYR LYS LYS HIS LYS SEQRES 5 B 298 PHE LEU ASP LEU ASN ARG PRO LEU LEU MET GLN ILE LEU SEQRES 6 B 298 ARG SER ASP PHE LYS LYS ASP PHE TYR VAL ASP GLN ILE SEQRES 7 B 298 HIS ARG PRO ARG HIS TYR GLY LYS GLY SER ALA PRO LEU SEQRES 8 B 298 PHE GLY ASN PHE LEU GLU PRO LEU THR LYS THR ALA TRP SEQRES 9 B 298 TRP VAL VAL PRO VAL ALA TRP LEU PRO VAL VAL VAL TYR SEQRES 10 B 298 HIS MET GLY VAL ALA LEU LYS ASN MET ASN GLN LEU PHE SEQRES 11 B 298 ALA CYS PHE LEU PHE CYS VAL GLY VAL PHE VAL TRP THR SEQRES 12 B 298 LEU ILE GLU TYR GLY LEU HIS ARG PHE LEU PHE HIS PHE SEQRES 13 B 298 ASP ASP TRP LEU PRO GLU SER ASN ILE ALA PHE ALA THR SEQRES 14 B 298 HIS PHE LEU LEU HIS GLY CYS HIS HIS TYR LEU PRO MET SEQRES 15 B 298 ASP LYS TYR ARG LEU VAL MET PRO PRO THR LEU PHE VAL SEQRES 16 B 298 ILE LEU CYS ALA PRO PHE TYR LYS LEU VAL PHE ALA LEU SEQRES 17 B 298 LEU PRO LEU TYR TRP ALA TYR ALA GLY PHE ALA GLY GLY SEQRES 18 B 298 LEU PHE GLY TYR VAL CYS TYR ASP GLU CYS HIS PHE PHE SEQRES 19 B 298 LEU HIS HIS SER LYS LEU PRO PRO PHE MET ARG LYS LEU SEQRES 20 B 298 LYS LYS TYR HIS LEU GLU HIS HIS TYR LYS ASN TYR GLN SEQRES 21 B 298 LEU GLY PHE GLY VAL THR SER TRP PHE TRP ASP GLU VAL SEQRES 22 B 298 PHE GLY THR TYR LEU GLY PRO ASP ALA PRO LEU SER LYS SEQRES 23 B 298 MET LYS TYR GLU SER GLY LEU GLU VAL LEU PHE GLN HET ZN A 401 1 HET ZN A 402 1 HET BOG A 403 20 HET BOG A 404 20 HET BOG A 405 20 HET BOG A 406 20 HET BOG A 407 20 HET BOG A 408 20 HET TRD A 409 13 HET TRD A 410 13 HET ZN B 401 1 HET ZN B 402 1 HET BOG B 403 20 HET BOG B 404 20 HET TRD B 405 13 HET TRD B 406 13 HET TRD B 407 13 HET TRD B 408 13 HET TRD B 409 13 HET TRD B 410 13 HETNAM ZN ZINC ION HETNAM BOG OCTYL BETA-D-GLUCOPYRANOSIDE HETNAM TRD TRIDECANE HETSYN BOG BETA-OCTYLGLUCOSIDE; OCTYL BETA-D-GLUCOSIDE; OCTYL D- HETSYN 2 BOG GLUCOSIDE; OCTYL GLUCOSIDE HETSYN TRD LIPID FRAGMENT FORMUL 3 ZN 4(ZN 2+) FORMUL 5 BOG 8(C14 H28 O6) FORMUL 11 TRD 8(C13 H28) HELIX 1 AA1 ALA A 128 SER A 133 5 6 HELIX 2 AA2 ASP A 137 LYS A 146 1 10 HELIX 3 AA3 PRO A 153 ARG A 160 1 8 HELIX 4 AA4 LYS A 164 HIS A 173 1 10 HELIX 5 AA5 LEU A 190 LYS A 195 5 6 HELIX 6 AA6 TRP A 199 MET A 220 1 22 HELIX 7 AA7 ASN A 221 LEU A 247 1 27 HELIX 8 AA8 PHE A 250 LEU A 254 5 5 HELIX 9 AA9 SER A 257 HIS A 268 1 12 HELIX 10 AB1 HIS A 268 LEU A 274 1 7 HELIX 11 AB2 PRO A 284 LEU A 303 1 20 HELIX 12 AB3 PRO A 304 HIS A 331 1 28 HELIX 13 AB4 PRO A 335 LYS A 351 1 17 HELIX 14 AB5 TRP A 362 PHE A 368 1 7 HELIX 15 AB6 ALA B 128 LEU B 132 5 5 HELIX 16 AB7 ASP B 137 LYS B 146 1 10 HELIX 17 AB8 PRO B 153 ARG B 160 1 8 HELIX 18 AB9 LYS B 164 HIS B 173 1 10 HELIX 19 AC1 LEU B 190 LYS B 195 5 6 HELIX 20 AC2 TRP B 199 LYS B 218 1 20 HELIX 21 AC3 ASN B 221 LEU B 247 1 27 HELIX 22 AC4 PHE B 250 LEU B 254 5 5 HELIX 23 AC5 SER B 257 HIS B 268 1 12 HELIX 24 AC6 HIS B 268 LEU B 274 1 7 HELIX 25 AC7 PRO B 284 LEU B 303 1 20 HELIX 26 AC8 PRO B 304 SER B 332 1 29 HELIX 27 AC9 PRO B 335 PHE B 337 5 3 HELIX 28 AD1 MET B 338 LYS B 351 1 14 HELIX 29 AD2 TRP B 362 PHE B 368 1 7 SHEET 1 AA1 2 TYR A 383 GLU A 384 0 SHEET 2 AA1 2 LEU A 387 GLU A 388 -1 O LEU A 387 N GLU A 384 SHEET 1 AA2 2 TYR B 383 GLU B 384 0 SHEET 2 AA2 2 LEU B 387 GLU B 388 -1 O LEU B 387 N GLU B 384 LINK NE2 HIS A 244 ZN ZN A 402 1555 1555 2.31 LINK NE2 HIS A 249 ZN ZN A 402 1555 1555 2.05 LINK NE2 HIS A 268 ZN ZN A 402 1555 1555 2.16 LINK NE2 HIS A 271 ZN ZN A 401 1555 1555 2.27 LINK NE2 HIS A 272 ZN ZN A 402 1555 1555 2.31 LINK NE2 HIS A 326 ZN ZN A 401 1555 1555 2.30 LINK NE2 HIS A 330 ZN ZN A 401 1555 1555 2.09 LINK NE2 HIS A 345 ZN ZN A 401 1555 1555 2.22 LINK NE2 HIS A 348 ZN ZN A 402 1555 1555 2.15 LINK NE2 HIS A 349 ZN ZN A 401 1555 1555 2.04 LINK NE2 HIS B 244 ZN ZN B 402 1555 1555 2.40 LINK NE2 HIS B 249 ZN ZN B 402 1555 1555 2.11 LINK NE2 HIS B 268 ZN ZN B 402 1555 1555 2.28 LINK NE2 HIS B 271 ZN ZN B 401 1555 1555 2.34 LINK NE2 HIS B 272 ZN ZN B 402 1555 1555 2.14 LINK NE2 HIS B 326 ZN ZN B 401 1555 1555 2.25 LINK NE2 HIS B 330 ZN ZN B 401 1555 1555 2.10 LINK NE2 HIS B 345 ZN ZN B 401 1555 1555 2.20 LINK NE2 HIS B 348 ZN ZN B 402 1555 1555 2.25 LINK NE2 HIS B 349 ZN ZN B 401 1555 1555 2.08 CRYST1 202.762 202.762 202.762 90.00 90.00 90.00 I 21 3 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004932 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004932 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004932 0.00000