PDB Short entry for 4ZZ1 HEADER TRANSFERASE/TRANSFERASE INHIBITOR 22-MAY-15 4ZZ1 TITLE HUMAN GAR TRANSFORMYLASE IN COMPLEX WITH GAR AND (S)-2-({4-[3-(2- TITLE 2 AMINO-4-OXO-4,7-DIHYDRO-3H-PYRROLO[2,3-D]PYRIMIDIN-6-YL)-PROPYL]- TITLE 3 THIOPHENE-2-CARBONYL}-AMINO)-PENTANEDIOIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRIFUNCTIONAL PURINE BIOSYNTHETIC PROTEIN ADENOSINE-3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: GAR TRANSFORMYLASE DOMAIN; COMPND 5 EC: 6.3.4.13,6.3.3.1,2.1.2.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GART, PGFT, PRGS; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS GAR TRANSFORMYLASE, ANTIFOLATE, TRANSFERASE-TRANSFERASE INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.M.DEIS,C.E.DANN III REVDAT 4 27-SEP-23 4ZZ1 1 REMARK REVDAT 3 04-DEC-19 4ZZ1 1 REMARK REVDAT 2 20-SEP-17 4ZZ1 1 JRNL REMARK REVDAT 1 16-DEC-15 4ZZ1 0 JRNL AUTH L.WANG,A.WALLACE,S.RAGHAVAN,S.M.DEIS,M.R.WILSON,S.YANG, JRNL AUTH 2 L.POLIN,K.WHITE,J.KUSHNER,S.ORR,C.GEORGE,C.O'CONNOR,Z.HOU, JRNL AUTH 3 S.MITCHELL-RYAN,C.E.DANN,L.H.MATHERLY,A.GANGJEE JRNL TITL 6-SUBSTITUTED PYRROLO[2,3-D]PYRIMIDINE THIENOYL REGIOISOMERS JRNL TITL 2 AS TARGETED ANTIFOLATES FOR FOLATE RECEPTOR ALPHA AND THE JRNL TITL 3 PROTON-COUPLED FOLATE TRANSPORTER IN HUMAN TUMORS. JRNL REF J.MED.CHEM. V. 58 6938 2015 JRNL REFN ISSN 0022-2623 JRNL PMID 26317331 JRNL DOI 10.1021/ACS.JMEDCHEM.5B00801 REMARK 2 REMARK 2 RESOLUTION. 1.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX PHENIX.REFINE 1.9 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.87 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 3 NUMBER OF REFLECTIONS : 70157 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.140 REMARK 3 R VALUE (WORKING SET) : 0.140 REMARK 3 FREE R VALUE : 0.158 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.860 REMARK 3 FREE R VALUE TEST SET COUNT : 2004 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.8883 - 3.2550 0.93 4933 149 0.1333 0.1403 REMARK 3 2 3.2550 - 2.5837 1.00 5142 150 0.1428 0.1747 REMARK 3 3 2.5837 - 2.2571 1.00 5098 150 0.1421 0.1693 REMARK 3 4 2.2571 - 2.0508 1.00 5078 149 0.1316 0.1383 REMARK 3 5 2.0508 - 1.9038 1.00 5059 147 0.1344 0.1538 REMARK 3 6 1.9038 - 1.7915 1.00 5027 146 0.1376 0.1651 REMARK 3 7 1.7915 - 1.7018 1.00 5068 147 0.1425 0.1800 REMARK 3 8 1.7018 - 1.6277 1.00 5017 146 0.1364 0.1609 REMARK 3 9 1.6277 - 1.5651 1.00 5027 150 0.1331 0.1435 REMARK 3 10 1.5651 - 1.5111 1.00 5002 148 0.1387 0.1358 REMARK 3 11 1.5111 - 1.4638 1.00 5010 147 0.1472 0.1803 REMARK 3 12 1.4638 - 1.4220 1.00 4984 148 0.1623 0.1991 REMARK 3 13 1.4220 - 1.3845 0.96 4822 142 0.1773 0.1776 REMARK 3 14 1.3845 - 1.3508 0.58 2886 85 0.1976 0.2033 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.090 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.360 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.91 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1695 REMARK 3 ANGLE : 1.163 2320 REMARK 3 CHIRALITY : 0.046 269 REMARK 3 PLANARITY : 0.006 305 REMARK 3 DIHEDRAL : 12.530 635 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 808 THROUGH 835 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.8883 -24.5589 -26.0697 REMARK 3 T TENSOR REMARK 3 T11: 0.1028 T22: 0.1548 REMARK 3 T33: 0.1257 T12: -0.0178 REMARK 3 T13: 0.0094 T23: 0.0020 REMARK 3 L TENSOR REMARK 3 L11: 1.2984 L22: 0.9441 REMARK 3 L33: 3.2942 L12: -0.1424 REMARK 3 L13: -1.0272 L23: 0.1131 REMARK 3 S TENSOR REMARK 3 S11: 0.0310 S12: -0.1845 S13: 0.0195 REMARK 3 S21: 0.0326 S22: -0.0202 S23: -0.0762 REMARK 3 S31: 0.0089 S32: 0.3101 S33: -0.0090 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 836 THROUGH 855 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.8294 -15.7767 -20.3796 REMARK 3 T TENSOR REMARK 3 T11: 0.1846 T22: 0.2553 REMARK 3 T33: 0.2018 T12: -0.0999 REMARK 3 T13: -0.0000 T23: -0.0242 REMARK 3 L TENSOR REMARK 3 L11: 1.4116 L22: 1.4517 REMARK 3 L33: 3.6834 L12: 0.2533 REMARK 3 L13: -0.5844 L23: 0.7179 REMARK 3 S TENSOR REMARK 3 S11: 0.1972 S12: -0.3559 S13: 0.1692 REMARK 3 S21: 0.1955 S22: -0.1170 S23: -0.2900 REMARK 3 S31: -0.3038 S32: 0.5433 S33: -0.1162 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 856 THROUGH 870 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.9903 -5.6543 -21.9638 REMARK 3 T TENSOR REMARK 3 T11: 0.3674 T22: 0.1957 REMARK 3 T33: 0.3116 T12: -0.1239 REMARK 3 T13: 0.0779 T23: -0.0734 REMARK 3 L TENSOR REMARK 3 L11: 1.9214 L22: 1.9152 REMARK 3 L33: 1.7256 L12: -0.9612 REMARK 3 L13: -0.6492 L23: 0.4013 REMARK 3 S TENSOR REMARK 3 S11: 0.1248 S12: -0.1436 S13: 0.4273 REMARK 3 S21: 0.3368 S22: -0.0918 S23: -0.1553 REMARK 3 S31: -0.6559 S32: 0.3049 S33: -0.2223 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 871 THROUGH 884 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.1101 -4.4518 -29.2893 REMARK 3 T TENSOR REMARK 3 T11: 0.3676 T22: 0.1282 REMARK 3 T33: 0.3027 T12: -0.0345 REMARK 3 T13: 0.1151 T23: 0.0043 REMARK 3 L TENSOR REMARK 3 L11: 2.4594 L22: 1.9943 REMARK 3 L33: 2.6285 L12: -0.5188 REMARK 3 L13: -1.6462 L23: 0.1442 REMARK 3 S TENSOR REMARK 3 S11: 0.3290 S12: 0.0873 S13: 0.5491 REMARK 3 S21: -0.0088 S22: -0.0450 S23: -0.1165 REMARK 3 S31: -0.4882 S32: -0.1201 S33: -0.1756 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 885 THROUGH 906 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.4511 -11.7931 -28.4745 REMARK 3 T TENSOR REMARK 3 T11: 0.2271 T22: 0.1116 REMARK 3 T33: 0.1809 T12: -0.0019 REMARK 3 T13: 0.0608 T23: 0.0109 REMARK 3 L TENSOR REMARK 3 L11: 1.5968 L22: 1.4729 REMARK 3 L33: 2.6625 L12: -0.4391 REMARK 3 L13: -1.0419 L23: 0.1743 REMARK 3 S TENSOR REMARK 3 S11: 0.2636 S12: 0.0302 S13: 0.3286 REMARK 3 S21: -0.0255 S22: -0.0545 S23: 0.0076 REMARK 3 S31: -0.4685 S32: -0.0721 S33: -0.1945 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 907 THROUGH 954 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.5518 -19.9265 -19.9022 REMARK 3 T TENSOR REMARK 3 T11: 0.1264 T22: 0.0978 REMARK 3 T33: 0.1290 T12: 0.0064 REMARK 3 T13: 0.0077 T23: 0.0005 REMARK 3 L TENSOR REMARK 3 L11: 1.3837 L22: 0.6613 REMARK 3 L33: 2.8527 L12: 0.2390 REMARK 3 L13: -1.2567 L23: -0.6644 REMARK 3 S TENSOR REMARK 3 S11: 0.1281 S12: 0.0580 S13: 0.1760 REMARK 3 S21: 0.0043 S22: -0.0225 S23: 0.0370 REMARK 3 S31: -0.2505 S32: -0.1081 S33: -0.1423 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 955 THROUGH 992 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.5635 -29.0135 -15.9966 REMARK 3 T TENSOR REMARK 3 T11: 0.0916 T22: 0.0719 REMARK 3 T33: 0.0909 T12: -0.0025 REMARK 3 T13: 0.0022 T23: -0.0037 REMARK 3 L TENSOR REMARK 3 L11: 0.8902 L22: 0.4062 REMARK 3 L33: 2.9721 L12: 0.2024 REMARK 3 L13: -0.6061 L23: -0.0792 REMARK 3 S TENSOR REMARK 3 S11: 0.0325 S12: -0.0628 S13: 0.0253 REMARK 3 S21: 0.0413 S22: -0.0150 S23: -0.0444 REMARK 3 S31: 0.0404 S32: 0.0692 S33: 0.0419 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 993 THROUGH 1007 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.1636 -25.4408 -37.7134 REMARK 3 T TENSOR REMARK 3 T11: 0.1626 T22: 0.3494 REMARK 3 T33: 0.2029 T12: 0.0371 REMARK 3 T13: -0.0386 T23: -0.0283 REMARK 3 L TENSOR REMARK 3 L11: 4.8666 L22: 2.5680 REMARK 3 L33: 2.2390 L12: -0.2652 REMARK 3 L13: 0.5255 L23: -0.6963 REMARK 3 S TENSOR REMARK 3 S11: -0.0659 S12: 0.7408 S13: 0.0420 REMARK 3 S21: -0.3853 S22: -0.1547 S23: 0.6168 REMARK 3 S31: -0.0298 S32: -0.8161 S33: -0.0891 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4ZZ1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-MAY-15. REMARK 100 THE DEPOSITION ID IS D_1000210129. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-AUG-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0001 REMARK 200 MONOCHROMATOR : ROSENBAUM-ROCK SI(111) SAGITALLY REMARK 200 FOCUSED MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CMOS REMARK 200 DETECTOR MANUFACTURER : RDI CMOS_8M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 71990 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.350 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 9.700 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.43000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: 4X79 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18 % PEG4000, 2 % PEG400, 0.33 M NACL, REMARK 280 PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.15733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 33.57867 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 33.57867 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 67.15733 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1504 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1522 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 807 REMARK 465 LYS A 1008 REMARK 465 GLU A 1009 REMARK 465 GLU A 1010 REMARK 465 HIS A 1011 REMARK 465 HIS A 1012 REMARK 465 HIS A 1013 REMARK 465 HIS A 1014 REMARK 465 HIS A 1015 REMARK 465 HIS A 1016 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A1000 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1404 O HOH A 1413 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 939 -151.86 -123.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1525 DISTANCE = 6.38 ANGSTROMS REMARK 525 HOH A1526 DISTANCE = 6.62 ANGSTROMS REMARK 525 HOH A1527 DISTANCE = 6.65 ANGSTROMS REMARK 525 HOH A1528 DISTANCE = 6.71 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GAR A 1101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 3YF A 1102 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4EW2 RELATED DB: PDB REMARK 900 4EW2 IS THE SAME PROTEIN COMPLEXED WITH 10S-METHYLTHIO-DDATHF REMARK 900 RELATED ID: 4EW3 RELATED DB: PDB REMARK 900 4EW3 IS THE SAME PROTEIN COMPLEXED WITH 10R-METHYLTHIO-DDATHF REMARK 900 RELATED ID: 1RBM RELATED DB: PDB REMARK 900 1RBM IS THE SAME PROTEIN COMPLEXED WITH POLYGLUTAMINATED 10- REMARK 900 (TRIFLUOROACETYL)-5,10-DIDEAZAACYCLIC-5,6,7,8-TETRAHYDROFOLIC ACID REMARK 900 RELATED ID: 1RBQ RELATED DB: PDB REMARK 900 1RBQ IS THE SAME PROTEIN COMPLEXED WITH 10-(TRIFLUOROACETYL)-5,10- REMARK 900 DIDEAZAACYCLIC-5,6,7,8-TETRAHYDROFOLIC ACID REMARK 900 RELATED ID: 1RBY RELATED DB: PDB REMARK 900 1RBY IS THE SAME PROTEIN COMPLEXED WITH 10-(TRIFLUOROACETYL)-5,10- REMARK 900 DIDEAZAACYCLIC-5,6,7,8-TETRAHYDROFOLIC ACID AND BETA-GAR REMARK 900 RELATED ID: 1RBZ RELATED DB: PDB REMARK 900 1RBZ IS THE SAME PROTEIN COMPLEXED WITH POLYGLUTAMINATED 10- REMARK 900 (TRIFLUOROACETYL)-5,10-DIDEAZAACYCLIC-5,6,7,8-TETRAHYDROFOLIC ACID REMARK 900 RELATED ID: 1RC0 RELATED DB: PDB REMARK 900 1RC0 IS THE SAME PROTEIN COMPLEXED WITH POLYGLUTAMINATED 10- REMARK 900 (TRIFLUOROACETYL)-5,10-DIDEAZAACYCLIC-5,6,7,8-TETRAHYDROFOLIC ACID REMARK 900 RELATED ID: 1RC1 RELATED DB: PDB REMARK 900 1RC1 IS THE SAME PROTEIN COMPLEXED WITH POLYGLUTAMINATED 10- REMARK 900 (TRIFLUOROACETYL)-5,10-DIDEAZAACYCLIC-5,6,7,8-TETRAHYDROFOLIC ACID REMARK 900 RELATED ID: 1NJS RELATED DB: PDB REMARK 900 1NJS IS THE SAME PROTEIN COMPLEXED WITH A HYDROLYZED FORM OF 10- REMARK 900 (TRIFLUOROACETYL)-5,10-DIDEAZAACYCLIC-5,6,7,8-TETRAHYDROFOLIC ACID REMARK 900 RELATED ID: 1MEN RELATED DB: PDB REMARK 900 1MEN IS THE SAME PROTEIN COMPLEXED WITH BETA-GAR REMARK 900 RELATED ID: 1MEJ RELATED DB: PDB REMARK 900 1MEJ IS THE SAME PROTEIN IN APO FORM AT PH 8.5 REMARK 900 RELATED ID: 1MEO RELATED DB: PDB REMARK 900 1MEO IS THE SAME PROTEIN IN APO FORM AT PH 4.2 REMARK 900 RELATED ID: 1ZLX RELATED DB: PDB REMARK 900 1ZLX IS THE SAME PROTEIN IN APO FORM REMARK 900 RELATED ID: 1ZLY RELATED DB: PDB REMARK 900 1ZLY IS THE SAME PROTEIN COMPLEXED WITH 4-[(4-{[(2-AMINO-4-OXO-3,4- REMARK 900 DIHYDROQUINAZOLIN- 6-YL)METHYL]AMINO}BENZOYL)AMINO]BUTANOIC ACID REMARK 900 AND 5-O-PHOSPHONO-BETA-D-RIBOFURANOSYLAMINE REMARK 900 RELATED ID: 4ZYT RELATED DB: PDB REMARK 900 RELATED ID: 4ZYU RELATED DB: PDB REMARK 900 RELATED ID: 4ZZ0 RELATED DB: PDB REMARK 900 RELATED ID: 4ZYV RELATED DB: PDB REMARK 900 RELATED ID: 4ZYW RELATED DB: PDB REMARK 900 RELATED ID: 4ZYZ RELATED DB: PDB REMARK 900 RELATED ID: 4ZYX RELATED DB: PDB REMARK 900 RELATED ID: 4ZYY RELATED DB: PDB REMARK 900 RELATED ID: 4ZZ2 RELATED DB: PDB REMARK 900 RELATED ID: 4ZZ3 RELATED DB: PDB DBREF 4ZZ1 A 808 1010 UNP P22102 PUR2_HUMAN 808 1010 SEQADV 4ZZ1 MET A 807 UNP P22102 INITIATING METHIONINE SEQADV 4ZZ1 HIS A 1011 UNP P22102 EXPRESSION TAG SEQADV 4ZZ1 HIS A 1012 UNP P22102 EXPRESSION TAG SEQADV 4ZZ1 HIS A 1013 UNP P22102 EXPRESSION TAG SEQADV 4ZZ1 HIS A 1014 UNP P22102 EXPRESSION TAG SEQADV 4ZZ1 HIS A 1015 UNP P22102 EXPRESSION TAG SEQADV 4ZZ1 HIS A 1016 UNP P22102 EXPRESSION TAG SEQRES 1 A 210 MET ALA ARG VAL ALA VAL LEU ILE SER GLY THR GLY SER SEQRES 2 A 210 ASN LEU GLN ALA LEU ILE ASP SER THR ARG GLU PRO ASN SEQRES 3 A 210 SER SER ALA GLN ILE ASP ILE VAL ILE SER ASN LYS ALA SEQRES 4 A 210 ALA VAL ALA GLY LEU ASP LYS ALA GLU ARG ALA GLY ILE SEQRES 5 A 210 PRO THR ARG VAL ILE ASN HIS LYS LEU TYR LYS ASN ARG SEQRES 6 A 210 VAL GLU PHE ASP SER ALA ILE ASP LEU VAL LEU GLU GLU SEQRES 7 A 210 PHE SER ILE ASP ILE VAL CYS LEU ALA GLY PHE MET ARG SEQRES 8 A 210 ILE LEU SER GLY PRO PHE VAL GLN LYS TRP ASN GLY LYS SEQRES 9 A 210 MET LEU ASN ILE HIS PRO SER LEU LEU PRO SER PHE LYS SEQRES 10 A 210 GLY SER ASN ALA HIS GLU GLN ALA LEU GLU THR GLY VAL SEQRES 11 A 210 THR VAL THR GLY CYS THR VAL HIS PHE VAL ALA GLU ASP SEQRES 12 A 210 VAL ASP ALA GLY GLN ILE ILE LEU GLN GLU ALA VAL PRO SEQRES 13 A 210 VAL LYS ARG GLY ASP THR VAL ALA THR LEU SER GLU ARG SEQRES 14 A 210 VAL LYS LEU ALA GLU HIS LYS ILE PHE PRO ALA ALA LEU SEQRES 15 A 210 GLN LEU VAL ALA SER GLY THR VAL GLN LEU GLY GLU ASN SEQRES 16 A 210 GLY LYS ILE CYS TRP VAL LYS GLU GLU HIS HIS HIS HIS SEQRES 17 A 210 HIS HIS HET GAR A1101 18 HET 3YF A1102 31 HETNAM GAR GLYCINAMIDE RIBONUCLEOTIDE HETNAM 3YF (S)-2-({4-[3-(2-AMINO-4-OXO-4,7-DIHYDRO-3H-PYRROLO[2,3- HETNAM 2 3YF D]PYRIMIDIN-6-YL)-PROPYL]-THIOPHENE-2-CARBONYL}- HETNAM 3 3YF AMINO)-PENTANEDIOIC ACID FORMUL 2 GAR C7 H13 N2 O8 P 2- FORMUL 3 3YF C19 H21 N5 O6 S FORMUL 4 HOH *328(H2 O) HELIX 1 AA1 GLY A 818 ARG A 829 1 12 HELIX 2 AA2 VAL A 847 ALA A 856 1 10 HELIX 3 AA3 ASN A 864 TYR A 868 5 5 HELIX 4 AA4 ASN A 870 PHE A 885 1 16 HELIX 5 AA5 SER A 900 TRP A 907 1 8 HELIX 6 AA6 ASN A 926 GLY A 935 1 10 HELIX 7 AA7 THR A 968 SER A 993 1 26 SHEET 1 AA1 7 THR A 860 VAL A 862 0 SHEET 2 AA1 7 GLN A 836 SER A 842 1 N SER A 842 O ARG A 861 SHEET 3 AA1 7 ARG A 809 ILE A 814 1 N VAL A 810 O GLN A 836 SHEET 4 AA1 7 ILE A 889 LEU A 892 1 O CYS A 891 N LEU A 813 SHEET 5 AA1 7 MET A 911 HIS A 915 1 O LEU A 912 N LEU A 892 SHEET 6 AA1 7 VAL A 938 PHE A 945 -1 O THR A 942 N HIS A 915 SHEET 7 AA1 7 ILE A 955 PRO A 962 -1 O VAL A 961 N THR A 939 SHEET 1 AA2 2 VAL A 996 LEU A 998 0 SHEET 2 AA2 2 ILE A1004 TRP A1006 -1 O CYS A1005 N GLN A 997 CISPEP 1 LEU A 919 PRO A 920 0 13.95 SITE 1 AC1 19 THR A 817 GLY A 818 SER A 819 ASN A 820 SITE 2 AC1 19 GLY A 894 MET A 896 ILE A 914 PRO A 916 SITE 3 AC1 19 LYS A 977 GLU A 980 3YF A1102 HOH A1217 SITE 4 AC1 19 HOH A1250 HOH A1255 HOH A1260 HOH A1275 SITE 5 AC1 19 HOH A1297 HOH A1344 HOH A1368 SITE 1 AC2 21 ARG A 871 PHE A 895 MET A 896 ARG A 897 SITE 2 AC2 21 ILE A 898 LEU A 899 VAL A 904 GLY A 924 SITE 3 AC2 21 SER A 925 HIS A 944 VAL A 946 ALA A 947 SITE 4 AC2 21 GLU A 948 VAL A 950 ASP A 951 GAR A1101 SITE 5 AC2 21 HOH A1203 HOH A1219 HOH A1240 HOH A1261 SITE 6 AC2 21 HOH A1282 CRYST1 75.344 75.344 100.736 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013272 0.007663 0.000000 0.00000 SCALE2 0.000000 0.015326 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009927 0.00000