PDB Short entry for 5A72 HEADER HYDROLASE/DNA 02-JUL-15 5A72 TITLE CRYSTAL STRUCTURE OF THE HOMING ENDONUCLEASE I-CVUI IN COMPLEX TITLE 2 WITH ITS TARGET (SRO1.3) IN THE PRESENCE OF 2 MM CA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA ENDONUCLEASE I-CVUI; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 23S RRNA INTRON PROTEIN, I-CVUI; COMPND 5 EC: 3.1.-.-; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: 24MER DNA, 5'-D(*DTP*CP*AP*GP*AP*AP*CP*GP*TP*CP*GP*TP*AP COMPND 9 *DCP*GP*AP*CP*GP*TP*TP*CP*TP*GP*A)-3'; COMPND 10 CHAIN: C, D; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHLORELLA VULGARIS; SOURCE 3 ORGANISM_COMMON: GREEN ALGAE; SOURCE 4 ORGANISM_TAXID: 3077; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET24D; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630 KEYWDS HYDROLASE-DNA COMPLEX, GENE TARGETING, GENETICS, PROTEIN-DNA KEYWDS 2 INTERACTION, HOMING ENDONUCLEASES EXPDTA X-RAY DIFFRACTION AUTHOR R.MOLINA,P.REDONDO,B.LOPEZMENDEZ,M.VILLATE,N.MERINO,F.J.BLANCO, AUTHOR 2 J.VALTON,S.GRIZOT,P.DUCHATEAU,J.PRIETO,G.MONTOYA REVDAT 2 09-DEC-15 5A72 1 JRNL REVDAT 1 23-SEP-15 5A72 0 JRNL AUTH R.MOLINA,P.REDONDO,B.LOPEZ-MENDEZ,M.VILLATE,N.MERINO, JRNL AUTH 2 F.J.BLANCO,J.VALTON,S.GRIZOT,P.DUCHATEAU,J.PRIETO,G.MONTOYA JRNL TITL CRYSTAL STRUCTURE OF THE HOMING ENDONUCLEASE I-CVUI JRNL TITL 2 PROVIDES A NEW TEMPLATE FOR GENOME MODIFICATION JRNL REF J.BIOL.CHEM. V. 290 28727 2015 JRNL REFN ISSN 0021-9258 JRNL PMID 26363068 JRNL DOI 10.1074/JBC.M115.678342 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.600 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.105 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.26 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.64 REMARK 3 NUMBER OF REFLECTIONS : 14548 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.1685 REMARK 3 R VALUE (WORKING SET) : 0.1614 REMARK 3 FREE R VALUE : 0.2331 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.9 REMARK 3 FREE R VALUE TEST SET COUNT : 2722 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.1127 - 6.9310 0.98 1323 148 0.1357 0.1581 REMARK 3 2 6.9310 - 5.5040 0.98 1334 141 0.1404 0.1857 REMARK 3 3 5.5040 - 4.8091 0.98 1312 142 0.1165 0.1590 REMARK 3 4 4.8091 - 4.3697 0.98 1340 146 0.1095 0.2150 REMARK 3 5 4.3697 - 4.0567 0.97 1302 151 0.1234 0.1795 REMARK 3 6 4.0567 - 3.8176 0.96 1310 135 0.1308 0.1937 REMARK 3 7 3.8176 - 3.6265 0.96 1311 140 0.1419 0.2333 REMARK 3 8 3.6265 - 3.4687 0.97 1290 138 0.1541 0.2200 REMARK 3 9 3.4687 - 3.3352 0.98 1343 145 0.1480 0.2847 REMARK 3 10 3.3352 - 3.2201 0.95 1269 140 0.1644 0.2914 REMARK 3 11 3.2201 - 3.1195 0.97 1354 147 0.1795 0.2971 REMARK 3 12 3.1195 - 3.0303 0.94 1243 138 0.1909 0.2240 REMARK 3 13 3.0303 - 2.9506 0.97 1329 146 0.2164 0.2803 REMARK 3 14 2.9506 - 2.8786 0.98 1310 146 0.2342 0.2933 REMARK 3 15 2.8786 - 2.8132 0.98 1322 144 0.2369 0.2851 REMARK 3 16 2.8132 - 2.7533 0.95 1292 134 0.2243 0.3059 REMARK 3 17 2.7533 - 2.6982 0.97 1265 146 0.2574 0.3131 REMARK 3 18 2.6982 - 2.6473 0.97 1369 149 0.2613 0.3226 REMARK 3 19 2.6473 - 2.6000 0.92 1238 146 0.2966 0.4054 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.33 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.40 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.18 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3598 REMARK 3 ANGLE : 1.200 5060 REMARK 3 CHIRALITY : 0.047 599 REMARK 3 PLANARITY : 0.005 467 REMARK 3 DIHEDRAL : 22.899 1414 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5A72 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-JUL-15. REMARK 100 THE PDBE ID CODE IS EBI-64254. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.70 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL (PILATUS 6M) REMARK 200 DETECTOR MANUFACTURER : DECTRIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14572 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.60 REMARK 200 RESOLUTION RANGE LOW (A) : 47.10 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 3.5 REMARK 200 R MERGE (I) : 0.12 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.00 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.4 REMARK 200 R MERGE FOR SHELL (I) : 0.48 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.60 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1G9Y REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 47.10500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -93.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 2 REMARK 465 GLN A 3 REMARK 465 PRO A 4 REMARK 465 THR A 5 REMARK 465 SER A 163 REMARK 465 ALA A 164 REMARK 465 ALA A 165 REMARK 465 LEU A 166 REMARK 465 GLU A 167 REMARK 465 HIS A 168 REMARK 465 HIS A 169 REMARK 465 HIS A 170 REMARK 465 HIS A 171 REMARK 465 HIS A 172 REMARK 465 HIS A 173 REMARK 465 ALA B 2 REMARK 465 GLN B 3 REMARK 465 PRO B 4 REMARK 465 THR B 5 REMARK 465 ALA B 164 REMARK 465 ALA B 165 REMARK 465 LEU B 166 REMARK 465 GLU B 167 REMARK 465 HIS B 168 REMARK 465 HIS B 169 REMARK 465 HIS B 170 REMARK 465 HIS B 171 REMARK 465 HIS B 172 REMARK 465 HIS B 173 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 23 O HOH A 2003 2.08 REMARK 500 NE2 GLN A 62 O HOH A 2020 2.13 REMARK 500 OD2 ASP A 133 O HOH A 2036 2.15 REMARK 500 O ALA B 28 NH2 ARG B 144 2.19 REMARK 500 OP2 DG C 515 O HOH A 2003 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA C 503 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES REMARK 500 DA C 506 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DT C 509 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DG C 523 O4' - C1' - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 DA D 603 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 DA D 606 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 DG D 618 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DG D 623 O4' - C1' - N9 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 25 109.48 -162.29 REMARK 500 LYS A 39 -2.56 64.79 REMARK 500 CYS B 25 104.68 -164.81 REMARK 500 LYS B 39 -3.08 65.00 REMARK 500 ASP B 140 41.61 -93.23 REMARK 500 VAL B 162 -67.13 -123.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1163 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DC C 514 OP1 REMARK 620 2 ASP A 23 OD1 127.1 REMARK 620 3 ASP A 23 OD2 92.9 44.4 REMARK 620 4 ALA B 22 O 146.5 79.0 95.2 REMARK 620 5 HOH A2004 O 77.0 115.8 82.5 71.9 REMARK 620 6 HOH A2041 O 86.3 145.4 159.1 74.9 76.9 REMARK 620 7 DG D 615 OP1 117.2 74.1 115.8 88.0 154.4 82.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1164 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 22 O REMARK 620 2 ASP B 23 OD1 79.5 REMARK 620 3 ASP B 23 OD2 92.5 45.0 REMARK 620 4 DG C 515 OP2 90.1 74.1 117.1 REMARK 620 5 DC D 614 OP1 156.9 110.2 81.5 112.5 REMARK 620 6 HOH A2001 O 73.8 120.9 84.4 154.1 83.4 REMARK 620 7 HOH A2002 O 79.8 146.2 162.0 79.5 99.1 77.8 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A1163 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B1164 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5A73 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE HOMING ENDONUCLEASE I-CVUI IN REMARK 900 COMPLEX WITH ITS TARGET (SRO1.3) IN THE PRESENCE REMARK 900 OF 2 MM MG REMARK 900 RELATED ID: 5A74 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE HOMING ENDONUCLEASE I-CVUI IN REMARK 900 COMPLEX WITH ITS TARGET (SRO1.3) IN THE PRESENCE REMARK 900 OF 2 MM MN REMARK 900 RELATED ID: 5A75 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE HOMING ENDONUCLEASE I-CVUI IN REMARK 900 COMPLEX WITH ITS TARGET (SRO1.3) IN THE PRESENCE REMARK 900 OF 10 MM MG REMARK 900 RELATED ID: 5A77 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE HOMING ENDONUCLEASE I-CVUI IN REMARK 900 COMPLEX WITH I-CREI TARGET (C1221) IN THE PRESENCE REMARK 900 OF 2 MM MG REVEALING DNA CLEAVED REMARK 900 RELATED ID: 5A78 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE HOMING ENDONUCLEASE I-CVUI IN REMARK 900 COMPLEX WITH I-CREI TARGET (C1221) IN THE PRESENCE REMARK 900 OF 2 MM MG REVEALING DNA NOT CLEAVED DBREF 5A72 A 3 162 UNP P56347 DNE1_CHLVU 2 161 DBREF 5A72 B 3 162 UNP P56347 DNE1_CHLVU 2 161 DBREF 5A72 C 501 524 PDB 5A72 5A72 501 524 DBREF 5A72 D 601 624 PDB 5A72 5A72 601 624 SEQADV 5A72 ALA A 2 UNP P56347 EXPRESSION TAG SEQADV 5A72 SER A 163 UNP P56347 EXPRESSION TAG SEQADV 5A72 ALA A 164 UNP P56347 EXPRESSION TAG SEQADV 5A72 ALA A 165 UNP P56347 EXPRESSION TAG SEQADV 5A72 LEU A 166 UNP P56347 EXPRESSION TAG SEQADV 5A72 GLU A 167 UNP P56347 EXPRESSION TAG SEQADV 5A72 HIS A 168 UNP P56347 EXPRESSION TAG SEQADV 5A72 HIS A 169 UNP P56347 EXPRESSION TAG SEQADV 5A72 HIS A 170 UNP P56347 EXPRESSION TAG SEQADV 5A72 HIS A 171 UNP P56347 EXPRESSION TAG SEQADV 5A72 HIS A 172 UNP P56347 EXPRESSION TAG SEQADV 5A72 HIS A 173 UNP P56347 EXPRESSION TAG SEQADV 5A72 GLN A 54 UNP P56347 ARG 53 CONFLICT SEQADV 5A72 ASN A 100 UNP P56347 GLN 99 CONFLICT SEQADV 5A72 ALA B 2 UNP P56347 EXPRESSION TAG SEQADV 5A72 SER B 163 UNP P56347 EXPRESSION TAG SEQADV 5A72 ALA B 164 UNP P56347 EXPRESSION TAG SEQADV 5A72 ALA B 165 UNP P56347 EXPRESSION TAG SEQADV 5A72 LEU B 166 UNP P56347 EXPRESSION TAG SEQADV 5A72 GLU B 167 UNP P56347 EXPRESSION TAG SEQADV 5A72 HIS B 168 UNP P56347 EXPRESSION TAG SEQADV 5A72 HIS B 169 UNP P56347 EXPRESSION TAG SEQADV 5A72 HIS B 170 UNP P56347 EXPRESSION TAG SEQADV 5A72 HIS B 171 UNP P56347 EXPRESSION TAG SEQADV 5A72 HIS B 172 UNP P56347 EXPRESSION TAG SEQADV 5A72 HIS B 173 UNP P56347 EXPRESSION TAG SEQADV 5A72 GLN B 54 UNP P56347 ARG 53 CONFLICT SEQADV 5A72 ASN B 100 UNP P56347 GLN 99 CONFLICT SEQRES 1 A 172 ALA GLN PRO THR ASN PHE HIS ASP GLN LEU LYS PHE ALA SEQRES 2 A 172 TRP LEU ALA GLY PHE VAL ASP ALA ASP GLY CYS ILE ASN SEQRES 3 A 172 ALA GLN ILE VAL SER ARG GLU ASP TYR LEU LEU LYS TYR SEQRES 4 A 172 GLN VAL ARG VAL SER LEU THR VAL PHE GLN SER THR THR SEQRES 5 A 172 GLN HIS PHE ILE LEU LEU ASP ILE GLN LYS ILE LEU GLY SEQRES 6 A 172 CYS GLY THR VAL ARG LYS ARG ASN ASP GLY MET SER GLU SEQRES 7 A 172 PHE CYS VAL VAL GLY GLY THR SER LEU GLN THR THR LEU SEQRES 8 A 172 GLU LYS LEU LEU PRO TYR LEU ASN LEU LYS ARG ALA GLN SEQRES 9 A 172 ALA LYS LEU VAL LEU GLN ILE ILE LYS LYS LEU PRO ASN SEQRES 10 A 172 THR LYS ASP PRO SER VAL LEU MET GLU ALA ALA LEU LEU SEQRES 11 A 172 ALA ASP LYS VAL GLY LEU LEU THR ASP GLY LYS LYS ARG SEQRES 12 A 172 THR ILE LEU ALA GLU ASN VAL ARG GLU CYS LEU LYS LYS SEQRES 13 A 172 LEU GLY HIS VAL VAL SER ALA ALA LEU GLU HIS HIS HIS SEQRES 14 A 172 HIS HIS HIS SEQRES 1 B 172 ALA GLN PRO THR ASN PHE HIS ASP GLN LEU LYS PHE ALA SEQRES 2 B 172 TRP LEU ALA GLY PHE VAL ASP ALA ASP GLY CYS ILE ASN SEQRES 3 B 172 ALA GLN ILE VAL SER ARG GLU ASP TYR LEU LEU LYS TYR SEQRES 4 B 172 GLN VAL ARG VAL SER LEU THR VAL PHE GLN SER THR THR SEQRES 5 B 172 GLN HIS PHE ILE LEU LEU ASP ILE GLN LYS ILE LEU GLY SEQRES 6 B 172 CYS GLY THR VAL ARG LYS ARG ASN ASP GLY MET SER GLU SEQRES 7 B 172 PHE CYS VAL VAL GLY GLY THR SER LEU GLN THR THR LEU SEQRES 8 B 172 GLU LYS LEU LEU PRO TYR LEU ASN LEU LYS ARG ALA GLN SEQRES 9 B 172 ALA LYS LEU VAL LEU GLN ILE ILE LYS LYS LEU PRO ASN SEQRES 10 B 172 THR LYS ASP PRO SER VAL LEU MET GLU ALA ALA LEU LEU SEQRES 11 B 172 ALA ASP LYS VAL GLY LEU LEU THR ASP GLY LYS LYS ARG SEQRES 12 B 172 THR ILE LEU ALA GLU ASN VAL ARG GLU CYS LEU LYS LYS SEQRES 13 B 172 LEU GLY HIS VAL VAL SER ALA ALA LEU GLU HIS HIS HIS SEQRES 14 B 172 HIS HIS HIS SEQRES 1 C 24 DT DC DA DG DA DA DC DG DT DC DG DT DA SEQRES 2 C 24 DC DG DA DC DG DT DT DC DT DG DA SEQRES 1 D 24 DT DC DA DG DA DA DC DG DT DC DG DT DA SEQRES 2 D 24 DC DG DA DC DG DT DT DC DT DG DA HET CA A1163 1 HET CA B1164 1 HETNAM CA CALCIUM ION FORMUL 5 CA 2(CA 2+) FORMUL 7 HOH *86(H2 O) HELIX 1 1 ASN A 6 ASP A 23 1 18 HELIX 2 2 GLN A 54 GLY A 66 1 13 HELIX 3 3 GLY A 84 LEU A 96 1 13 HELIX 4 4 LYS A 102 LEU A 116 1 15 HELIX 5 5 PRO A 117 THR A 119 5 3 HELIX 6 6 ASP A 121 THR A 139 1 19 HELIX 7 7 LEU A 147 LEU A 158 1 12 HELIX 8 8 ASN B 6 ASP B 23 1 18 HELIX 9 9 GLN B 54 GLY B 66 1 13 HELIX 10 10 GLY B 84 LEU B 96 1 13 HELIX 11 11 LYS B 102 LEU B 116 1 15 HELIX 12 12 PRO B 117 THR B 119 5 3 HELIX 13 13 ASP B 121 THR B 139 1 19 HELIX 14 14 LEU B 147 LEU B 158 1 12 SHEET 1 AA 4 GLY A 24 SER A 32 0 SHEET 2 AA 4 TYR A 40 SER A 51 -1 O GLN A 41 N VAL A 31 SHEET 3 AA 4 MET A 77 VAL A 83 -1 O SER A 78 N GLN A 50 SHEET 4 AA 4 THR A 69 LYS A 72 -1 O THR A 69 N CYS A 81 SHEET 1 BA 4 GLY B 24 SER B 32 0 SHEET 2 BA 4 TYR B 40 SER B 51 -1 O GLN B 41 N VAL B 31 SHEET 3 BA 4 MET B 77 VAL B 83 -1 O SER B 78 N GLN B 50 SHEET 4 BA 4 THR B 69 LYS B 72 -1 O THR B 69 N CYS B 81 LINK CA CA A1163 OP1 DC C 514 1555 1555 2.38 LINK CA CA A1163 OD1 ASP A 23 1555 1555 3.13 LINK CA CA A1163 OD2 ASP A 23 1555 1555 2.42 LINK CA CA A1163 O ALA B 22 1555 1555 2.37 LINK CA CA A1163 O HOH A2004 1555 1555 2.46 LINK CA CA A1163 O HOH A2041 1555 1555 2.86 LINK CA CA A1163 OP1 DG D 615 1555 1555 2.29 LINK CA CA B1164 OD1 ASP B 23 1555 1555 3.08 LINK CA CA B1164 OD2 ASP B 23 1555 1555 2.52 LINK CA CA B1164 OP2 DG C 515 1555 1555 2.42 LINK CA CA B1164 OP1 DC D 614 1555 1555 2.30 LINK CA CA B1164 O HOH A2001 1555 1555 2.36 LINK CA CA B1164 O HOH A2002 1555 1555 2.64 LINK CA CA B1164 O ALA A 22 1555 1555 2.34 SITE 1 AC1 6 ASP A 23 HOH A2004 HOH A2041 ALA B 22 SITE 2 AC1 6 DC C 514 DG D 615 SITE 1 AC2 6 ALA A 22 HOH A2001 HOH A2002 ASP B 23 SITE 2 AC2 6 DG C 515 DC D 614 CRYST1 51.179 94.210 51.340 90.00 104.83 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019539 0.000000 0.005173 0.00000 SCALE2 0.000000 0.010615 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020149 0.00000