PDB Short entry for 5AKF HEADER HYDROLASE 03-MAR-15 5AKF TITLE THE CRYSTAL STRUCTURE OF I-DMOI Q42AK120M IN COMPLEX WITH ITS TARGET TITLE 2 DNA NICKED IN THE CODING STRAND A AND IN THE PRESENCE OF 2MM MN COMPND MOL_ID: 1; COMPND 2 MOLECULE: HOMING ENDONUCLEASE I-DMOI; COMPND 3 CHAIN: A, E, I; COMPND 4 SYNONYM: I-DMOI; COMPND 5 EC: 3.1.-.-; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: 5'-D(*GP*CP*CP*TP*TP*GP*CP*CP*GP*GP*GP*TP*AP*AP)-3'; COMPND 10 CHAIN: B, F, J; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: 5'-D(*GP*TP*TP*CP*CP*GP*GP*CP*GP*CP*GP)-3'; COMPND 14 CHAIN: C, G, K; COMPND 15 ENGINEERED: YES; COMPND 16 MOL_ID: 4; COMPND 17 MOLECULE: 25MER; COMPND 18 CHAIN: D, H, L; COMPND 19 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DESULFUROCOCCUS MOBILIS; SOURCE 3 ORGANISM_TAXID: 2274; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VARIANT: ROSETTA PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET24D; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630; SOURCE 14 MOL_ID: 3; SOURCE 15 SYNTHETIC: YES; SOURCE 16 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 17 ORGANISM_TAXID: 32630; SOURCE 18 MOL_ID: 4; SOURCE 19 SYNTHETIC: YES; SOURCE 20 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 21 ORGANISM_TAXID: 32630 KEYWDS HYDROLASE, GENE TARGETING, GENETICS, PROTEIN-DNA INTERACTION, HOMING KEYWDS 2 ENDONUCLEASES EXPDTA X-RAY DIFFRACTION AUTHOR R.MOLINA,M.J.MARCAIDA,P.REDONDO,M.MARENCHINO,M.D'ABRAMO,G.MONTOYA, AUTHOR 2 J.PRIETO REVDAT 4 10-JAN-24 5AKF 1 REMARK LINK REVDAT 3 23-AUG-17 5AKF 1 REMARK REVDAT 2 05-AUG-15 5AKF 1 JRNL REVDAT 1 17-JUN-15 5AKF 0 JRNL AUTH R.MOLINA,M.J.MARCAIDA,P.REDONDO,M.MARENCHINO,P.DUCHATEAU, JRNL AUTH 2 M.D'ABRAMO,G.MONTOYA,J.PRIETO JRNL TITL ENGINEERING A NICKASE ON THE HOMING ENDONUCLEASE I-DMOI JRNL TITL 2 SCAFFOLD. JRNL REF J.BIOL.CHEM. V. 290 18534 2015 JRNL REFN ISSN 0021-9258 JRNL PMID 26045557 JRNL DOI 10.1074/JBC.M115.658666 REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.65 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 50535 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2564 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.6566 - 5.2754 0.97 4836 259 0.1610 0.1983 REMARK 3 2 5.2754 - 4.1884 1.00 4883 251 0.1338 0.1683 REMARK 3 3 4.1884 - 3.6593 0.99 4820 248 0.1495 0.2082 REMARK 3 4 3.6593 - 3.3249 0.99 4816 265 0.1497 0.2166 REMARK 3 5 3.3249 - 3.0866 0.99 4802 273 0.1571 0.2175 REMARK 3 6 3.0866 - 2.9047 0.99 4750 254 0.1759 0.2450 REMARK 3 7 2.9047 - 2.7592 0.99 4779 265 0.1954 0.2619 REMARK 3 8 2.7592 - 2.6391 0.99 4790 247 0.2197 0.3037 REMARK 3 9 2.6391 - 2.5376 0.99 4782 222 0.2330 0.3149 REMARK 3 10 2.5376 - 2.4500 0.99 4713 280 0.2560 0.3335 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 63.21 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.440 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.240 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 51.72 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -6.41660 REMARK 3 B22 (A**2) : 12.94410 REMARK 3 B33 (A**2) : -6.52750 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 2.17520 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 8038 REMARK 3 ANGLE : 1.239 11498 REMARK 3 CHIRALITY : 0.061 1293 REMARK 3 PLANARITY : 0.003 923 REMARK 3 DIHEDRAL : 24.003 3224 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 20 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 5:48) REMARK 3 ORIGIN FOR THE GROUP (A): -19.6135 4.6593 -25.2570 REMARK 3 T TENSOR REMARK 3 T11: 0.3282 T22: 0.1934 REMARK 3 T33: 0.2398 T12: 0.0349 REMARK 3 T13: -0.0029 T23: -0.0159 REMARK 3 L TENSOR REMARK 3 L11: 2.5829 L22: 2.4298 REMARK 3 L33: 1.5173 L12: -2.3801 REMARK 3 L13: -0.6001 L23: 1.1260 REMARK 3 S TENSOR REMARK 3 S11: -0.3068 S12: -0.3973 S13: 0.0845 REMARK 3 S21: -0.1712 S22: 0.2607 S23: -0.2067 REMARK 3 S31: 0.0018 S32: 0.1486 S33: 0.0194 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 49:75) REMARK 3 ORIGIN FOR THE GROUP (A): -20.4469 13.6280 -22.4614 REMARK 3 T TENSOR REMARK 3 T11: 0.3422 T22: 0.1636 REMARK 3 T33: 0.4067 T12: 0.0756 REMARK 3 T13: 0.0413 T23: -0.1044 REMARK 3 L TENSOR REMARK 3 L11: 6.5373 L22: 0.8076 REMARK 3 L33: 2.0603 L12: 1.1092 REMARK 3 L13: 0.2321 L23: 1.0509 REMARK 3 S TENSOR REMARK 3 S11: -0.0740 S12: -0.9256 S13: 1.3477 REMARK 3 S21: 0.0622 S22: 0.1785 S23: -0.2261 REMARK 3 S31: -0.4817 S32: -0.2377 S33: -0.0279 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 76:183) REMARK 3 ORIGIN FOR THE GROUP (A): -7.9850 4.4156 -37.4084 REMARK 3 T TENSOR REMARK 3 T11: 0.3532 T22: 0.0539 REMARK 3 T33: 0.2465 T12: 0.0303 REMARK 3 T13: 0.1096 T23: 0.0332 REMARK 3 L TENSOR REMARK 3 L11: 6.0311 L22: 2.1038 REMARK 3 L33: 1.3799 L12: -1.5854 REMARK 3 L13: -0.7039 L23: 0.7791 REMARK 3 S TENSOR REMARK 3 S11: 0.2449 S12: 0.3262 S13: 0.2832 REMARK 3 S21: -0.5650 S22: -0.1282 S23: -0.3550 REMARK 3 S31: -0.2229 S32: 0.0422 S33: -0.1325 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN B AND RESID 1:14) REMARK 3 ORIGIN FOR THE GROUP (A): 8.7257 -2.0656 -31.8538 REMARK 3 T TENSOR REMARK 3 T11: 0.2985 T22: 0.5561 REMARK 3 T33: 0.5642 T12: 0.0157 REMARK 3 T13: 0.1838 T23: 0.0344 REMARK 3 L TENSOR REMARK 3 L11: 4.4723 L22: 2.5187 REMARK 3 L33: 4.4074 L12: -0.7558 REMARK 3 L13: 0.7814 L23: -0.4593 REMARK 3 S TENSOR REMARK 3 S11: -0.5451 S12: -1.0908 S13: -0.2470 REMARK 3 S21: -0.3747 S22: 0.5681 S23: -0.8304 REMARK 3 S31: 0.5017 S32: 0.7115 S33: -0.1266 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN C AND RESID 15:25) REMARK 3 ORIGIN FOR THE GROUP (A): -28.3185 -1.2553 -14.5867 REMARK 3 T TENSOR REMARK 3 T11: 0.1399 T22: 0.4228 REMARK 3 T33: 0.4567 T12: 0.0647 REMARK 3 T13: 0.1148 T23: 0.0840 REMARK 3 L TENSOR REMARK 3 L11: 1.0001 L22: 2.1839 REMARK 3 L33: 3.2785 L12: -1.4541 REMARK 3 L13: 0.4097 L23: -1.1902 REMARK 3 S TENSOR REMARK 3 S11: -1.0248 S12: -1.6454 S13: -0.6467 REMARK 3 S21: 0.0729 S22: 0.7398 S23: 0.1703 REMARK 3 S31: 0.3675 S32: 0.3400 S33: 0.1838 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN D AND RESID 1:15) REMARK 3 ORIGIN FOR THE GROUP (A): -22.2598 -2.7473 -16.8219 REMARK 3 T TENSOR REMARK 3 T11: 0.3123 T22: 0.5569 REMARK 3 T33: 0.3595 T12: 0.1672 REMARK 3 T13: 0.1326 T23: 0.1333 REMARK 3 L TENSOR REMARK 3 L11: 4.2245 L22: 1.6631 REMARK 3 L33: 0.2776 L12: -1.1479 REMARK 3 L13: -1.0682 L23: 0.4345 REMARK 3 S TENSOR REMARK 3 S11: -0.9417 S12: -1.1125 S13: -0.4151 REMARK 3 S21: 0.3360 S22: 0.2856 S23: 0.1274 REMARK 3 S31: 0.4690 S32: 0.0707 S33: 0.5100 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN D AND RESID 16:25) REMARK 3 ORIGIN FOR THE GROUP (A): 13.4231 -2.3177 -36.6782 REMARK 3 T TENSOR REMARK 3 T11: 0.4297 T22: 0.5726 REMARK 3 T33: 0.7359 T12: -0.0815 REMARK 3 T13: 0.3170 T23: 0.0569 REMARK 3 L TENSOR REMARK 3 L11: 8.2279 L22: 1.1882 REMARK 3 L33: 2.9142 L12: -1.5755 REMARK 3 L13: -3.5602 L23: 0.5594 REMARK 3 S TENSOR REMARK 3 S11: -0.0830 S12: -1.1040 S13: 0.7597 REMARK 3 S21: -0.4492 S22: 0.4235 S23: -0.6549 REMARK 3 S31: -0.1117 S32: 1.1251 S33: -0.4075 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN E AND RESID 5:95) REMARK 3 ORIGIN FOR THE GROUP (A): -0.9446 42.1457 -42.2690 REMARK 3 T TENSOR REMARK 3 T11: 0.3260 T22: 0.1264 REMARK 3 T33: 0.2921 T12: 0.0122 REMARK 3 T13: 0.0584 T23: 0.0896 REMARK 3 L TENSOR REMARK 3 L11: 0.9448 L22: 2.2408 REMARK 3 L33: 2.4907 L12: -0.3604 REMARK 3 L13: 0.4831 L23: 1.0650 REMARK 3 S TENSOR REMARK 3 S11: 0.0769 S12: -0.1621 S13: 0.0869 REMARK 3 S21: 0.0566 S22: 0.0941 S23: -0.1043 REMARK 3 S31: -0.2271 S32: -0.2694 S33: -0.1230 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN E AND RESID 96:180) REMARK 3 ORIGIN FOR THE GROUP (A): 20.3422 38.3956 -36.9418 REMARK 3 T TENSOR REMARK 3 T11: 0.2496 T22: 0.2958 REMARK 3 T33: 0.3551 T12: -0.0050 REMARK 3 T13: 0.0553 T23: 0.0067 REMARK 3 L TENSOR REMARK 3 L11: 1.3534 L22: 1.6718 REMARK 3 L33: 4.5079 L12: -1.3047 REMARK 3 L13: 1.2287 L23: -1.1439 REMARK 3 S TENSOR REMARK 3 S11: 0.1025 S12: -0.0018 S13: -0.1028 REMARK 3 S21: -0.1938 S22: -0.0504 S23: -0.7993 REMARK 3 S31: 0.2998 S32: 1.0918 S33: -0.0535 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN F AND RESID 1:14) REMARK 3 ORIGIN FOR THE GROUP (A): 20.1202 30.5410 -21.7162 REMARK 3 T TENSOR REMARK 3 T11: 0.3378 T22: 0.6669 REMARK 3 T33: 0.4679 T12: 0.0199 REMARK 3 T13: -0.1229 T23: 0.1084 REMARK 3 L TENSOR REMARK 3 L11: 2.4522 L22: 0.3744 REMARK 3 L33: 2.2009 L12: 0.6343 REMARK 3 L13: -1.3497 L23: 0.2169 REMARK 3 S TENSOR REMARK 3 S11: 0.0440 S12: -1.4409 S13: -0.8545 REMARK 3 S21: 0.2465 S22: 0.3747 S23: -0.4407 REMARK 3 S31: 0.0033 S32: 0.3771 S33: -0.3557 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN G AND RESID 15:25) REMARK 3 ORIGIN FOR THE GROUP (A): -13.4933 33.2507 -44.9117 REMARK 3 T TENSOR REMARK 3 T11: 0.3322 T22: 0.4191 REMARK 3 T33: 0.2608 T12: -0.0353 REMARK 3 T13: -0.1560 T23: 0.0820 REMARK 3 L TENSOR REMARK 3 L11: 0.4606 L22: 1.3546 REMARK 3 L33: 4.0832 L12: 0.0428 REMARK 3 L13: -0.1727 L23: -1.1666 REMARK 3 S TENSOR REMARK 3 S11: -0.0936 S12: -0.6465 S13: -0.6068 REMARK 3 S21: -0.0731 S22: 0.4644 S23: 0.2584 REMARK 3 S31: -0.0321 S32: -1.1464 S33: -0.2728 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN H AND RESID 1:15) REMARK 3 ORIGIN FOR THE GROUP (A): -8.3069 31.5576 -40.7144 REMARK 3 T TENSOR REMARK 3 T11: 0.3315 T22: 0.3762 REMARK 3 T33: 0.3317 T12: -0.0292 REMARK 3 T13: -0.0119 T23: 0.1140 REMARK 3 L TENSOR REMARK 3 L11: 0.7586 L22: 2.3847 REMARK 3 L33: 2.1205 L12: 0.0115 REMARK 3 L13: 0.5315 L23: 0.8668 REMARK 3 S TENSOR REMARK 3 S11: -0.1464 S12: -0.1584 S13: -0.7675 REMARK 3 S21: 0.3281 S22: 0.0833 S23: 0.1958 REMARK 3 S31: -0.1086 S32: -0.7637 S33: 0.1607 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: (CHAIN H AND RESID 16:25) REMARK 3 ORIGIN FOR THE GROUP (A): 26.6392 30.3127 -20.1740 REMARK 3 T TENSOR REMARK 3 T11: 0.4351 T22: 1.1390 REMARK 3 T33: 0.6207 T12: -0.0161 REMARK 3 T13: -0.2553 T23: -0.1169 REMARK 3 L TENSOR REMARK 3 L11: 4.3214 L22: 3.6382 REMARK 3 L33: 1.1032 L12: 1.6712 REMARK 3 L13: -1.9683 L23: -0.1270 REMARK 3 S TENSOR REMARK 3 S11: -0.3052 S12: -1.6150 S13: -0.1544 REMARK 3 S21: 0.3352 S22: 0.6426 S23: -1.1400 REMARK 3 S31: -0.5724 S32: 1.2227 S33: -0.2295 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: (CHAIN I AND RESID 5:65) REMARK 3 ORIGIN FOR THE GROUP (A): -49.1782 45.0853 8.1328 REMARK 3 T TENSOR REMARK 3 T11: 0.2978 T22: 0.1606 REMARK 3 T33: 0.2953 T12: -0.0246 REMARK 3 T13: 0.0165 T23: -0.0184 REMARK 3 L TENSOR REMARK 3 L11: 0.6303 L22: 3.1957 REMARK 3 L33: 1.5063 L12: -1.4243 REMARK 3 L13: -0.6992 L23: 1.3736 REMARK 3 S TENSOR REMARK 3 S11: 0.1516 S12: -0.1654 S13: 0.0387 REMARK 3 S21: -0.0413 S22: 0.0621 S23: -0.0172 REMARK 3 S31: -0.2872 S32: 0.1385 S33: -0.2113 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: (CHAIN I AND RESID 66:125) REMARK 3 ORIGIN FOR THE GROUP (A): -52.0461 42.5789 1.7221 REMARK 3 T TENSOR REMARK 3 T11: 0.3282 T22: 0.1635 REMARK 3 T33: 0.2565 T12: 0.0006 REMARK 3 T13: 0.0099 T23: 0.0070 REMARK 3 L TENSOR REMARK 3 L11: 1.3423 L22: 1.6061 REMARK 3 L33: 2.3106 L12: -0.8959 REMARK 3 L13: 0.4500 L23: 1.2042 REMARK 3 S TENSOR REMARK 3 S11: -0.0080 S12: -0.0806 S13: 0.1264 REMARK 3 S21: -0.1294 S22: -0.0462 S23: 0.0705 REMARK 3 S31: -0.2748 S32: 0.0824 S33: 0.0516 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: (CHAIN I AND RESID 126:179) REMARK 3 ORIGIN FOR THE GROUP (A): -53.6267 36.3818 -14.3453 REMARK 3 T TENSOR REMARK 3 T11: 0.3055 T22: 0.1270 REMARK 3 T33: 0.1793 T12: 0.0281 REMARK 3 T13: -0.0083 T23: 0.0509 REMARK 3 L TENSOR REMARK 3 L11: 3.5200 L22: 1.6479 REMARK 3 L33: 1.0835 L12: -0.5664 REMARK 3 L13: -0.1457 L23: 0.4852 REMARK 3 S TENSOR REMARK 3 S11: -0.1617 S12: 0.5003 S13: -0.2987 REMARK 3 S21: -0.6507 S22: 0.1671 S23: 0.1361 REMARK 3 S31: 0.1863 S32: -0.2996 S33: -0.0651 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: (CHAIN J AND RESID 1:14) REMARK 3 ORIGIN FOR THE GROUP (A): -39.9569 34.0535 -19.1881 REMARK 3 T TENSOR REMARK 3 T11: 0.4540 T22: 0.3618 REMARK 3 T33: 0.1569 T12: -0.0810 REMARK 3 T13: 0.1623 T23: -0.0101 REMARK 3 L TENSOR REMARK 3 L11: 4.8598 L22: 2.9324 REMARK 3 L33: 0.8683 L12: 0.6605 REMARK 3 L13: -0.3637 L23: 1.3119 REMARK 3 S TENSOR REMARK 3 S11: -0.0600 S12: 0.8784 S13: -0.0068 REMARK 3 S21: -0.9217 S22: 0.5471 S23: -0.3137 REMARK 3 S31: 0.0433 S32: 0.4205 S33: -0.3341 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: (CHAIN K AND RESID 15:25) REMARK 3 ORIGIN FOR THE GROUP (A): -43.1435 36.1553 21.6893 REMARK 3 T TENSOR REMARK 3 T11: 0.4518 T22: 0.5143 REMARK 3 T33: 0.2160 T12: 0.0808 REMARK 3 T13: 0.1165 T23: -0.0311 REMARK 3 L TENSOR REMARK 3 L11: 1.8133 L22: 1.0545 REMARK 3 L33: 4.0211 L12: -1.1932 REMARK 3 L13: -1.0850 L23: 1.6842 REMARK 3 S TENSOR REMARK 3 S11: 0.1320 S12: -0.5900 S13: 0.0049 REMARK 3 S21: 0.1259 S22: 0.4995 S23: 0.2194 REMARK 3 S31: 0.4927 S32: 1.1097 S33: -0.4506 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: (CHAIN L AND RESID 1:15) REMARK 3 ORIGIN FOR THE GROUP (A): -41.9402 34.6813 15.0670 REMARK 3 T TENSOR REMARK 3 T11: 0.3088 T22: 0.5152 REMARK 3 T33: 0.2649 T12: 0.0853 REMARK 3 T13: -0.0040 T23: -0.0289 REMARK 3 L TENSOR REMARK 3 L11: 1.1836 L22: 2.4976 REMARK 3 L33: 5.7414 L12: -1.2287 REMARK 3 L13: -1.7089 L23: 3.3287 REMARK 3 S TENSOR REMARK 3 S11: 0.3788 S12: -0.4948 S13: 0.1974 REMARK 3 S21: 0.3152 S22: 0.5599 S23: -0.1857 REMARK 3 S31: 0.5368 S32: 0.6110 S33: -0.6910 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: (CHAIN L AND RESID 16:25) REMARK 3 ORIGIN FOR THE GROUP (A): -42.0009 33.3245 -25.9230 REMARK 3 T TENSOR REMARK 3 T11: 0.7447 T22: 0.6486 REMARK 3 T33: 0.2583 T12: -0.1194 REMARK 3 T13: 0.0801 T23: 0.0065 REMARK 3 L TENSOR REMARK 3 L11: 5.6363 L22: 2.7765 REMARK 3 L33: 0.4581 L12: 1.2205 REMARK 3 L13: -1.4785 L23: -0.5972 REMARK 3 S TENSOR REMARK 3 S11: -0.2073 S12: 1.4001 S13: -0.5532 REMARK 3 S21: -0.9563 S22: 0.7207 S23: -0.1522 REMARK 3 S31: -0.6119 S32: 0.7655 S33: -0.2036 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5AKF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1290063183. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.8929 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50841 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 56.140 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.74000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2VS7 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 35.23500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -52.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: I, J, K, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -56.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -65.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 HIS A 2 REMARK 465 ASN A 3 REMARK 465 ASN A 4 REMARK 465 PRO A 184 REMARK 465 LEU A 185 REMARK 465 PRO A 186 REMARK 465 PRO A 187 REMARK 465 GLU A 188 REMARK 465 ALA A 189 REMARK 465 ALA A 190 REMARK 465 ALA A 191 REMARK 465 LEU A 192 REMARK 465 GLU A 193 REMARK 465 HIS A 194 REMARK 465 HIS A 195 REMARK 465 HIS A 196 REMARK 465 HIS A 197 REMARK 465 HIS A 198 REMARK 465 HIS A 199 REMARK 465 ALA E 1 REMARK 465 HIS E 2 REMARK 465 ASN E 3 REMARK 465 ASN E 4 REMARK 465 HIS E 181 REMARK 465 LEU E 182 REMARK 465 ASN E 183 REMARK 465 PRO E 184 REMARK 465 LEU E 185 REMARK 465 PRO E 186 REMARK 465 PRO E 187 REMARK 465 GLU E 188 REMARK 465 ALA E 189 REMARK 465 ALA E 190 REMARK 465 ALA E 191 REMARK 465 LEU E 192 REMARK 465 GLU E 193 REMARK 465 HIS E 194 REMARK 465 HIS E 195 REMARK 465 HIS E 196 REMARK 465 HIS E 197 REMARK 465 HIS E 198 REMARK 465 HIS E 199 REMARK 465 ALA I 1 REMARK 465 HIS I 2 REMARK 465 ASN I 3 REMARK 465 ASN I 4 REMARK 465 SER I 180 REMARK 465 HIS I 181 REMARK 465 LEU I 182 REMARK 465 ASN I 183 REMARK 465 PRO I 184 REMARK 465 LEU I 185 REMARK 465 PRO I 186 REMARK 465 PRO I 187 REMARK 465 GLU I 188 REMARK 465 ALA I 189 REMARK 465 ALA I 190 REMARK 465 ALA I 191 REMARK 465 LEU I 192 REMARK 465 GLU I 193 REMARK 465 HIS I 194 REMARK 465 HIS I 195 REMARK 465 HIS I 196 REMARK 465 HIS I 197 REMARK 465 HIS I 198 REMARK 465 HIS I 199 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ILE E 48 N CA C O CB CG1 CG2 REMARK 480 ILE E 48 CD1 REMARK 480 ILE I 48 N CA C O CB CG1 CG2 REMARK 480 ILE I 48 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OP1 DC H 15 O HOH E 2006 2.05 REMARK 500 OP1 DC D 15 O HOH A 2004 2.15 REMARK 500 OP1 DG K 15 O HOH I 2010 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU I 62 O HIS I 156 2455 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG B 1 P DG B 1 OP3 -0.127 REMARK 500 DG C 15 P DG C 15 OP3 -0.129 REMARK 500 DG F 1 P DG F 1 OP3 -0.128 REMARK 500 DG G 15 P DG G 15 OP3 -0.124 REMARK 500 DG J 1 P DG J 1 OP3 -0.127 REMARK 500 DG K 15 P DG K 15 OP3 -0.124 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT B 5 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 DC C 19 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DG C 21 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 DC D 3 O4' - C1' - N1 ANGL. DEV. = 3.4 DEGREES REMARK 500 DC D 11 O4' - C1' - N1 ANGL. DEV. = 3.2 DEGREES REMARK 500 DA D 14 O4' - C1' - N9 ANGL. DEV. = -5.9 DEGREES REMARK 500 DC D 15 C3' - C2' - C1' ANGL. DEV. = -5.0 DEGREES REMARK 500 DG D 18 O4' - C1' - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 DA D 21 C3' - C2' - C1' ANGL. DEV. = -5.5 DEGREES REMARK 500 DC F 3 O4' - C1' - N1 ANGL. DEV. = -4.3 DEGREES REMARK 500 DG F 11 C3' - C2' - C1' ANGL. DEV. = -5.0 DEGREES REMARK 500 DG G 20 O4' - C1' - N9 ANGL. DEV. = 5.7 DEGREES REMARK 500 DC G 22 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 DG H 8 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 DA H 9 C3' - C2' - C1' ANGL. DEV. = -4.9 DEGREES REMARK 500 DA H 9 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DT H 12 O4' - C4' - C3' ANGL. DEV. = -2.5 DEGREES REMARK 500 DT H 12 C3' - C2' - C1' ANGL. DEV. = -4.9 DEGREES REMARK 500 DG H 18 C3' - C2' - C1' ANGL. DEV. = -5.6 DEGREES REMARK 500 DA H 21 C3' - C2' - C1' ANGL. DEV. = -5.7 DEGREES REMARK 500 DA H 21 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DG J 1 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DT J 4 N3 - C4 - O4 ANGL. DEV. = 3.6 DEGREES REMARK 500 DG J 11 C3' - C2' - C1' ANGL. DEV. = -4.8 DEGREES REMARK 500 DG J 11 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 DG K 15 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DT K 16 O4' - C1' - N1 ANGL. DEV. = -5.7 DEGREES REMARK 500 DT K 17 C3' - C2' - C1' ANGL. DEV. = -5.3 DEGREES REMARK 500 DC K 18 O4' - C1' - N1 ANGL. DEV. = 3.8 DEGREES REMARK 500 DG K 20 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DG K 21 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DC K 24 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 DG L 2 O4' - C1' - N9 ANGL. DEV. = -5.8 DEGREES REMARK 500 DA L 9 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DT L 13 O4' - C1' - N1 ANGL. DEV. = -4.3 DEGREES REMARK 500 DA L 14 O4' - C1' - N9 ANGL. DEV. = -4.4 DEGREES REMARK 500 DC L 15 C3' - C2' - C1' ANGL. DEV. = -5.3 DEGREES REMARK 500 DG L 18 O4' - C1' - N9 ANGL. DEV. = 3.9 DEGREES REMARK 500 DA L 21 C3' - C2' - C1' ANGL. DEV. = -4.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 129 138.51 176.19 REMARK 500 SER A 179 31.55 -95.87 REMARK 500 LEU E 122 7.28 55.43 REMARK 500 ASN E 129 148.50 -171.41 REMARK 500 SER I 84 110.59 -161.09 REMARK 500 LEU I 122 -1.86 70.18 REMARK 500 ASN I 129 147.10 -171.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH L2016 DISTANCE = 8.01 ANGSTROMS REMARK 525 HOH L2017 DISTANCE = 5.99 ANGSTROMS REMARK 525 HOH L2020 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH L2021 DISTANCE = 6.90 ANGSTROMS REMARK 525 HOH L2022 DISTANCE = 6.28 ANGSTROMS REMARK 525 HOH L2023 DISTANCE = 6.97 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A1185 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 21 OD1 REMARK 620 2 ASP A 21 OD2 48.6 REMARK 620 3 ALA A 116 O 85.5 90.3 REMARK 620 4 HOH A2007 O 123.7 77.3 79.8 REMARK 620 5 HOH A2055 O 167.3 143.9 95.7 68.9 REMARK 620 6 DA B 14 OP1 104.3 86.9 163.9 84.1 77.6 REMARK 620 7 DC D 16 OP2 74.6 123.0 78.9 150.4 93.1 115.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN E1182 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP E 21 OD2 REMARK 620 2 ALA E 116 O 85.7 REMARK 620 3 HOH E2046 O 151.5 93.8 REMARK 620 4 DA F 14 OP1 90.5 175.8 88.7 REMARK 620 5 DC H 16 OP2 117.9 75.7 89.4 107.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN I1180 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP I 21 OD2 REMARK 620 2 ALA I 116 O 87.3 REMARK 620 3 DA J 14 OP1 86.3 170.6 REMARK 620 4 DC L 16 OP2 123.8 76.7 101.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1184 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 1015 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL I 1181 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 1185 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN E 1182 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN I 1180 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5AK9 RELATED DB: PDB REMARK 900 THE CRYSTAL STRUCTURE OF I-DMOI Q42AK120M IN COMPLEX WITH ITS REMARK 900 TARGET DNA IN THE PRESENCE OF 2MM MN REMARK 900 RELATED ID: 5AKM RELATED DB: PDB REMARK 900 THE CRYSTAL STRUCTURE OF I-DMOI G20S IN COMPLEX WITH ITS TARGET DNA REMARK 900 IN THE PRESENCE OF 2MM MG REMARK 900 RELATED ID: 5AKN RELATED DB: PDB REMARK 900 THE CRYSTAL STRUCTURE OF I-DMOI Q42AK120M IN COMPLEX WITH ITS REMARK 900 TARGET DNA NICKED IN THE NON-CODING STRAND B AND IN THE PRESENCE OF REMARK 900 2MM MN DBREF 5AKF A 2 188 UNP P21505 DMO1_DESMO 2 188 DBREF 5AKF E 2 188 UNP P21505 DMO1_DESMO 2 188 DBREF 5AKF I 2 188 UNP P21505 DMO1_DESMO 2 188 DBREF 5AKF B 1 14 PDB 5AKF 5AKF 1 14 DBREF 5AKF F 1 14 PDB 5AKF 5AKF 1 14 DBREF 5AKF J 1 14 PDB 5AKF 5AKF 1 14 DBREF 5AKF C 15 25 PDB 5AKF 5AKF 15 25 DBREF 5AKF G 15 25 PDB 5AKF 5AKF 15 25 DBREF 5AKF K 15 25 PDB 5AKF 5AKF 15 25 DBREF 5AKF D 1 25 PDB 5AKF 5AKF 1 25 DBREF 5AKF H 1 25 PDB 5AKF 5AKF 1 25 DBREF 5AKF L 1 25 PDB 5AKF 5AKF 1 25 SEQADV 5AKF ALA A 1 UNP P21505 EXPRESSION TAG SEQADV 5AKF ALA A 189 UNP P21505 EXPRESSION TAG SEQADV 5AKF ALA A 190 UNP P21505 EXPRESSION TAG SEQADV 5AKF ALA A 191 UNP P21505 EXPRESSION TAG SEQADV 5AKF LEU A 192 UNP P21505 EXPRESSION TAG SEQADV 5AKF GLU A 193 UNP P21505 EXPRESSION TAG SEQADV 5AKF HIS A 194 UNP P21505 EXPRESSION TAG SEQADV 5AKF HIS A 195 UNP P21505 EXPRESSION TAG SEQADV 5AKF HIS A 196 UNP P21505 EXPRESSION TAG SEQADV 5AKF HIS A 197 UNP P21505 EXPRESSION TAG SEQADV 5AKF HIS A 198 UNP P21505 EXPRESSION TAG SEQADV 5AKF HIS A 199 UNP P21505 EXPRESSION TAG SEQADV 5AKF ALA A 42 UNP P21505 GLN 42 ENGINEERED MUTATION SEQADV 5AKF MET A 120 UNP P21505 LYS 120 ENGINEERED MUTATION SEQADV 5AKF ALA E 1 UNP P21505 EXPRESSION TAG SEQADV 5AKF ALA E 189 UNP P21505 EXPRESSION TAG SEQADV 5AKF ALA E 190 UNP P21505 EXPRESSION TAG SEQADV 5AKF ALA E 191 UNP P21505 EXPRESSION TAG SEQADV 5AKF LEU E 192 UNP P21505 EXPRESSION TAG SEQADV 5AKF GLU E 193 UNP P21505 EXPRESSION TAG SEQADV 5AKF HIS E 194 UNP P21505 EXPRESSION TAG SEQADV 5AKF HIS E 195 UNP P21505 EXPRESSION TAG SEQADV 5AKF HIS E 196 UNP P21505 EXPRESSION TAG SEQADV 5AKF HIS E 197 UNP P21505 EXPRESSION TAG SEQADV 5AKF HIS E 198 UNP P21505 EXPRESSION TAG SEQADV 5AKF HIS E 199 UNP P21505 EXPRESSION TAG SEQADV 5AKF ALA E 42 UNP P21505 GLN 42 ENGINEERED MUTATION SEQADV 5AKF MET E 120 UNP P21505 LYS 120 ENGINEERED MUTATION SEQADV 5AKF ALA I 1 UNP P21505 EXPRESSION TAG SEQADV 5AKF ALA I 189 UNP P21505 EXPRESSION TAG SEQADV 5AKF ALA I 190 UNP P21505 EXPRESSION TAG SEQADV 5AKF ALA I 191 UNP P21505 EXPRESSION TAG SEQADV 5AKF LEU I 192 UNP P21505 EXPRESSION TAG SEQADV 5AKF GLU I 193 UNP P21505 EXPRESSION TAG SEQADV 5AKF HIS I 194 UNP P21505 EXPRESSION TAG SEQADV 5AKF HIS I 195 UNP P21505 EXPRESSION TAG SEQADV 5AKF HIS I 196 UNP P21505 EXPRESSION TAG SEQADV 5AKF HIS I 197 UNP P21505 EXPRESSION TAG SEQADV 5AKF HIS I 198 UNP P21505 EXPRESSION TAG SEQADV 5AKF HIS I 199 UNP P21505 EXPRESSION TAG SEQADV 5AKF ALA I 42 UNP P21505 GLN 42 ENGINEERED MUTATION SEQADV 5AKF MET I 120 UNP P21505 LYS 120 ENGINEERED MUTATION SEQRES 1 A 199 ALA HIS ASN ASN GLU ASN VAL SER GLY ILE SER ALA TYR SEQRES 2 A 199 LEU LEU GLY LEU ILE ILE GLY ASP GLY GLY LEU TYR LYS SEQRES 3 A 199 LEU LYS TYR LYS GLY ASN ARG SER GLU TYR ARG VAL VAL SEQRES 4 A 199 ILE THR ALA LYS SER GLU ASN LEU ILE LYS GLN HIS ILE SEQRES 5 A 199 ALA PRO LEU MET GLN PHE LEU ILE ASP GLU LEU ASN VAL SEQRES 6 A 199 LYS SER LYS ILE GLN ILE VAL LYS GLY ASP THR ARG TYR SEQRES 7 A 199 GLU LEU ARG VAL SER SER LYS LYS LEU TYR TYR TYR PHE SEQRES 8 A 199 ALA ASN MET LEU GLU ARG ILE ARG LEU PHE ASN MET ARG SEQRES 9 A 199 GLU GLN ILE ALA PHE ILE LYS GLY LEU TYR VAL ALA GLU SEQRES 10 A 199 GLY ASP MET THR LEU LYS ARG LEU ARG ILE TRP ASN LYS SEQRES 11 A 199 ASN LYS ALA LEU LEU GLU ILE VAL SER ARG TRP LEU ASN SEQRES 12 A 199 ASN LEU GLY VAL ARG ASN THR ILE HIS LEU ASP ASP HIS SEQRES 13 A 199 ARG HIS GLY VAL TYR VAL LEU ASN ILE SER LEU ARG ASP SEQRES 14 A 199 ARG ILE LYS PHE VAL HIS THR ILE LEU SER SER HIS LEU SEQRES 15 A 199 ASN PRO LEU PRO PRO GLU ALA ALA ALA LEU GLU HIS HIS SEQRES 16 A 199 HIS HIS HIS HIS SEQRES 1 B 14 DG DC DC DT DT DG DC DC DG DG DG DT DA SEQRES 2 B 14 DA SEQRES 1 C 11 DG DT DT DC DC DG DG DC DG DC DG SEQRES 1 D 25 DC DG DC DG DC DC DG DG DA DA DC DT DT SEQRES 2 D 25 DA DC DC DC DG DG DC DA DA DG DG DC SEQRES 1 E 199 ALA HIS ASN ASN GLU ASN VAL SER GLY ILE SER ALA TYR SEQRES 2 E 199 LEU LEU GLY LEU ILE ILE GLY ASP GLY GLY LEU TYR LYS SEQRES 3 E 199 LEU LYS TYR LYS GLY ASN ARG SER GLU TYR ARG VAL VAL SEQRES 4 E 199 ILE THR ALA LYS SER GLU ASN LEU ILE LYS GLN HIS ILE SEQRES 5 E 199 ALA PRO LEU MET GLN PHE LEU ILE ASP GLU LEU ASN VAL SEQRES 6 E 199 LYS SER LYS ILE GLN ILE VAL LYS GLY ASP THR ARG TYR SEQRES 7 E 199 GLU LEU ARG VAL SER SER LYS LYS LEU TYR TYR TYR PHE SEQRES 8 E 199 ALA ASN MET LEU GLU ARG ILE ARG LEU PHE ASN MET ARG SEQRES 9 E 199 GLU GLN ILE ALA PHE ILE LYS GLY LEU TYR VAL ALA GLU SEQRES 10 E 199 GLY ASP MET THR LEU LYS ARG LEU ARG ILE TRP ASN LYS SEQRES 11 E 199 ASN LYS ALA LEU LEU GLU ILE VAL SER ARG TRP LEU ASN SEQRES 12 E 199 ASN LEU GLY VAL ARG ASN THR ILE HIS LEU ASP ASP HIS SEQRES 13 E 199 ARG HIS GLY VAL TYR VAL LEU ASN ILE SER LEU ARG ASP SEQRES 14 E 199 ARG ILE LYS PHE VAL HIS THR ILE LEU SER SER HIS LEU SEQRES 15 E 199 ASN PRO LEU PRO PRO GLU ALA ALA ALA LEU GLU HIS HIS SEQRES 16 E 199 HIS HIS HIS HIS SEQRES 1 F 14 DG DC DC DT DT DG DC DC DG DG DG DT DA SEQRES 2 F 14 DA SEQRES 1 G 11 DG DT DT DC DC DG DG DC DG DC DG SEQRES 1 H 25 DC DG DC DG DC DC DG DG DA DA DC DT DT SEQRES 2 H 25 DA DC DC DC DG DG DC DA DA DG DG DC SEQRES 1 I 199 ALA HIS ASN ASN GLU ASN VAL SER GLY ILE SER ALA TYR SEQRES 2 I 199 LEU LEU GLY LEU ILE ILE GLY ASP GLY GLY LEU TYR LYS SEQRES 3 I 199 LEU LYS TYR LYS GLY ASN ARG SER GLU TYR ARG VAL VAL SEQRES 4 I 199 ILE THR ALA LYS SER GLU ASN LEU ILE LYS GLN HIS ILE SEQRES 5 I 199 ALA PRO LEU MET GLN PHE LEU ILE ASP GLU LEU ASN VAL SEQRES 6 I 199 LYS SER LYS ILE GLN ILE VAL LYS GLY ASP THR ARG TYR SEQRES 7 I 199 GLU LEU ARG VAL SER SER LYS LYS LEU TYR TYR TYR PHE SEQRES 8 I 199 ALA ASN MET LEU GLU ARG ILE ARG LEU PHE ASN MET ARG SEQRES 9 I 199 GLU GLN ILE ALA PHE ILE LYS GLY LEU TYR VAL ALA GLU SEQRES 10 I 199 GLY ASP MET THR LEU LYS ARG LEU ARG ILE TRP ASN LYS SEQRES 11 I 199 ASN LYS ALA LEU LEU GLU ILE VAL SER ARG TRP LEU ASN SEQRES 12 I 199 ASN LEU GLY VAL ARG ASN THR ILE HIS LEU ASP ASP HIS SEQRES 13 I 199 ARG HIS GLY VAL TYR VAL LEU ASN ILE SER LEU ARG ASP SEQRES 14 I 199 ARG ILE LYS PHE VAL HIS THR ILE LEU SER SER HIS LEU SEQRES 15 I 199 ASN PRO LEU PRO PRO GLU ALA ALA ALA LEU GLU HIS HIS SEQRES 16 I 199 HIS HIS HIS HIS SEQRES 1 J 14 DG DC DC DT DT DG DC DC DG DG DG DT DA SEQRES 2 J 14 DA SEQRES 1 K 11 DG DT DT DC DC DG DG DC DG DC DG SEQRES 1 L 25 DC DG DC DG DC DC DG DG DA DA DC DT DT SEQRES 2 L 25 DA DC DC DC DG DG DC DA DA DG DG DC HET CL A1181 1 HET ACT A1184 4 HET MN A1185 1 HET CL B1015 1 HET CL E1181 1 HET MN E1182 1 HET MN I1180 1 HET CL I1181 1 HETNAM CL CHLORIDE ION HETNAM ACT ACETATE ION HETNAM MN MANGANESE (II) ION FORMUL 13 CL 4(CL 1-) FORMUL 14 ACT C2 H3 O2 1- FORMUL 15 MN 3(MN 2+) FORMUL 21 HOH *301(H2 O) HELIX 1 1 GLU A 5 ASP A 21 1 17 HELIX 2 2 SER A 44 HIS A 51 1 8 HELIX 3 3 HIS A 51 LEU A 63 1 13 HELIX 4 4 SER A 84 ARG A 97 1 14 HELIX 5 5 ILE A 98 PHE A 101 5 4 HELIX 6 6 ASN A 102 GLY A 118 1 17 HELIX 7 7 ASN A 131 LEU A 145 1 15 HELIX 8 8 ASP A 169 ILE A 177 1 9 HELIX 9 9 GLU E 5 ASP E 21 1 17 HELIX 10 10 SER E 44 HIS E 51 1 8 HELIX 11 11 HIS E 51 LEU E 63 1 13 HELIX 12 12 SER E 84 ARG E 97 1 14 HELIX 13 13 ILE E 98 PHE E 101 5 4 HELIX 14 14 ASN E 102 GLY E 118 1 17 HELIX 15 15 ASN E 131 LEU E 145 1 15 HELIX 16 16 ASP E 169 ILE E 177 1 9 HELIX 17 17 GLU I 5 ASP I 21 1 17 HELIX 18 18 SER I 44 HIS I 51 1 8 HELIX 19 19 HIS I 51 LEU I 63 1 13 HELIX 20 20 SER I 84 ARG I 97 1 14 HELIX 21 21 ILE I 98 PHE I 101 5 4 HELIX 22 22 ASN I 102 GLY I 118 1 17 HELIX 23 23 ASN I 131 LEU I 145 1 15 HELIX 24 24 ASP I 169 ILE I 177 1 9 SHEET 1 AA 4 GLY A 22 LYS A 28 0 SHEET 2 AA 4 SER A 34 ALA A 42 -1 O GLU A 35 N LEU A 27 SHEET 3 AA 4 TYR A 78 SER A 83 -1 O TYR A 78 N ALA A 42 SHEET 4 AA 4 ILE A 69 LYS A 73 -1 O GLN A 70 N ARG A 81 SHEET 1 AB 3 ARG A 126 ASN A 129 0 SHEET 2 AB 3 VAL A 160 ILE A 165 -1 O TYR A 161 N ASN A 129 SHEET 3 AB 3 ASN A 149 ASP A 155 -1 O THR A 150 N ASN A 164 SHEET 1 EA 4 GLY E 22 TYR E 29 0 SHEET 2 EA 4 ARG E 33 ALA E 42 -1 O ARG E 33 N TYR E 29 SHEET 3 EA 4 TYR E 78 SER E 83 -1 O TYR E 78 N ALA E 42 SHEET 4 EA 4 ILE E 69 LYS E 73 -1 O GLN E 70 N ARG E 81 SHEET 1 EB 3 LEU E 125 ASN E 129 0 SHEET 2 EB 3 VAL E 160 ILE E 165 -1 O TYR E 161 N ASN E 129 SHEET 3 EB 3 ASN E 149 ASP E 155 -1 O THR E 150 N ASN E 164 SHEET 1 IA 4 GLY I 22 LYS I 28 0 SHEET 2 IA 4 SER I 34 ALA I 42 -1 O GLU I 35 N LEU I 27 SHEET 3 IA 4 TYR I 78 SER I 83 -1 O TYR I 78 N ALA I 42 SHEET 4 IA 4 ILE I 69 LYS I 73 -1 O GLN I 70 N ARG I 81 SHEET 1 IB 3 ARG I 126 ASN I 129 0 SHEET 2 IB 3 VAL I 160 ILE I 165 -1 O TYR I 161 N ASN I 129 SHEET 3 IB 3 ASN I 149 ASP I 155 -1 O THR I 150 N ASN I 164 LINK OD1 ASP A 21 MN MN A1185 1555 1555 2.78 LINK OD2 ASP A 21 MN MN A1185 1555 1555 2.53 LINK O ALA A 116 MN MN A1185 1555 1555 2.45 LINK MN MN A1185 O HOH A2007 1555 1555 2.54 LINK MN MN A1185 O HOH A2055 1555 1555 2.74 LINK MN MN A1185 OP1 DA B 14 1555 1555 2.30 LINK MN MN A1185 OP2 DC D 16 1555 1555 2.29 LINK OD2 ASP E 21 MN MN E1182 1555 1555 2.59 LINK O ALA E 116 MN MN E1182 1555 1555 2.42 LINK MN MN E1182 O HOH E2046 1555 1555 2.78 LINK MN MN E1182 OP1 DA F 14 1555 1555 2.29 LINK MN MN E1182 OP2 DC H 16 1555 1555 2.37 LINK OD2 ASP I 21 MN MN I1180 1555 1555 2.63 LINK O ALA I 116 MN MN I1180 1555 1555 2.38 LINK MN MN I1180 OP1 DA J 14 1555 1555 2.23 LINK MN MN I1180 OP2 DC L 16 1555 1555 2.34 CISPEP 1 LYS A 30 GLY A 31 0 -11.23 CISPEP 2 LEU A 182 ASN A 183 0 7.73 CISPEP 3 LYS E 30 GLY E 31 0 -8.86 CISPEP 4 LYS I 30 GLY I 31 0 -9.94 SITE 1 AC1 2 LEU A 182 ASN A 183 SITE 1 AC2 2 DG B 6 DA D 22 SITE 1 AC3 1 ASN I 131 SITE 1 AC4 6 ASP A 21 ALA A 116 HOH A2007 HOH A2055 SITE 2 AC4 6 DA B 14 DC D 16 SITE 1 AC5 5 ASP E 21 ALA E 116 HOH E2046 DA F 14 SITE 2 AC5 5 DC H 16 SITE 1 AC6 4 ASP I 21 ALA I 116 DA J 14 DC L 16 CRYST1 106.820 70.470 107.100 90.00 119.88 90.00 P 1 21 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009362 0.000000 0.005379 0.00000 SCALE2 0.000000 0.014190 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010769 0.00000