PDB Short entry for 5AOL HEADER CELL CYCLE 10-SEP-15 5AOL TITLE STRUCTURE OF THE P53 CANCER MUTANT Y220C WITH BOUND 3-BROMO-5- TITLE 2 (TRIFLUOROMETHYL)BENZENE-1,2-DIAMINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELLULAR TUMOR ANTIGEN P53; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: DNA-BINDING DOMAIN, UNP RESIDUES 94-312; COMPND 5 SYNONYM: ANTIGEN NY-CO-13, PHOSPHOPROTEIN P53, TUMOR SUPPRESSOR P53, COMPND 6 P53; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CELL CYCLE, P53, CANCER, TUMOR SUPPRESSION, DNA BINDING, CANCER KEYWDS 2 THERAPY, SMALL-MOLECULE STABILIZERS, MOLECULAR CHAPERONE EXPDTA X-RAY DIFFRACTION AUTHOR A.C.JOERGER,H.HARBRECHT REVDAT 4 10-JAN-24 5AOL 1 REMARK LINK REVDAT 3 15-MAY-19 5AOL 1 REMARK REVDAT 2 08-MAY-19 5AOL 1 REMARK REVDAT 1 16-DEC-15 5AOL 0 JRNL AUTH A.C.JOERGER,M.R.BAUER,R.WILCKEN,M.G.J.BAUD,H.HARBRECHT, JRNL AUTH 2 T.E.EXNER,F.M.BOECKLER,J.SPENCER,A.R.FERSHT JRNL TITL EXPLOITING TRANSIENT PROTEIN STATES FOR THE DESIGN OF JRNL TITL 2 SMALL-MOLECULE STABILIZERS OF MUTANT P53. JRNL REF STRUCTURE V. 23 2246 2015 JRNL REFN ISSN 0969-2126 JRNL PMID 26636255 JRNL DOI 10.1016/J.STR.2015.10.016 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.42 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 78403 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.140 REMARK 3 R VALUE (WORKING SET) : 0.139 REMARK 3 FREE R VALUE : 0.169 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3912 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.4304 - 4.5518 0.99 2883 129 0.1646 0.1596 REMARK 3 2 4.5518 - 3.6140 1.00 2749 127 0.1417 0.1656 REMARK 3 3 3.6140 - 3.1575 1.00 2739 142 0.1471 0.1702 REMARK 3 4 3.1575 - 2.8690 1.00 2708 132 0.1531 0.1685 REMARK 3 5 2.8690 - 2.6634 1.00 2687 148 0.1540 0.1776 REMARK 3 6 2.6634 - 2.5064 1.00 2680 137 0.1472 0.1638 REMARK 3 7 2.5064 - 2.3809 1.00 2654 145 0.1434 0.1635 REMARK 3 8 2.3809 - 2.2773 1.00 2695 135 0.1382 0.1743 REMARK 3 9 2.2773 - 2.1897 1.00 2652 128 0.1335 0.1806 REMARK 3 10 2.1897 - 2.1141 1.00 2656 149 0.1351 0.1765 REMARK 3 11 2.1141 - 2.0480 1.00 2645 154 0.1310 0.1803 REMARK 3 12 2.0480 - 1.9895 1.00 2669 129 0.1321 0.1618 REMARK 3 13 1.9895 - 1.9371 1.00 2672 134 0.1290 0.1607 REMARK 3 14 1.9371 - 1.8898 1.00 2633 134 0.1254 0.1752 REMARK 3 15 1.8898 - 1.8469 1.00 2628 148 0.1256 0.1607 REMARK 3 16 1.8469 - 1.8076 1.00 2623 162 0.1206 0.1776 REMARK 3 17 1.8076 - 1.7714 1.00 2649 151 0.1152 0.1578 REMARK 3 18 1.7714 - 1.7380 1.00 2601 147 0.1123 0.1726 REMARK 3 19 1.7380 - 1.7070 1.00 2655 143 0.1146 0.1678 REMARK 3 20 1.7070 - 1.6780 1.00 2619 147 0.1139 0.1550 REMARK 3 21 1.6780 - 1.6510 1.00 2626 141 0.1130 0.1370 REMARK 3 22 1.6510 - 1.6256 1.00 2603 137 0.1185 0.1839 REMARK 3 23 1.6256 - 1.6016 1.00 2662 142 0.1305 0.1563 REMARK 3 24 1.6016 - 1.5791 1.00 2571 154 0.1324 0.2024 REMARK 3 25 1.5791 - 1.5577 0.99 2669 118 0.1318 0.1792 REMARK 3 26 1.5577 - 1.5375 0.99 2633 119 0.1349 0.1894 REMARK 3 27 1.5375 - 1.5183 1.00 2629 135 0.1386 0.1953 REMARK 3 28 1.5183 - 1.5000 0.99 2601 145 0.1430 0.1797 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.110 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.210 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 11.23 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3313 REMARK 3 ANGLE : 1.023 4514 REMARK 3 CHIRALITY : 0.042 498 REMARK 3 PLANARITY : 0.006 594 REMARK 3 DIHEDRAL : 11.720 1286 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: SMALL MOLECULE BINDING WAS OBSERVED IN REMARK 3 CHAIN A ONLY, WITH PARTIAL OCCUPANCY. RESIDUES 219-224 IN CHAIN REMARK 3 A WERE REFINED IN TWO ALTERNATIVE CONFORMATIONS, CORRESPONDING REMARK 3 TO BOUND AND UNBOUND STATE OF THE Y220C POCKET. REMARK 4 REMARK 4 5AOL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1290064973. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 78962 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 35.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : 0.34000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 2J1X REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SITTING-DROP VAPOR DIFFUSION AT 21 REMARK 280 DEGREE C. PROTEIN SOLUTION: 6 MG/ML PROTEIN IN 25 MM SODIUM REMARK 280 PHOSPHATE, PH 7.2, 150 MM KCL, 5 MM DTT. RESERVOIR BUFFER: 100 REMARK 280 MM HEPES, PH 7.2, 19% (W/V) POLYETHYLENE GLYCOL 4000, 5 MM DTT. REMARK 280 SOAKING BUFFER: 30 MM COMPOUND IN 100 MM HEPES, PH 7.2, 10 MM REMARK 280 SODIUM PHOSPHATE, PH 7.2, 19% (W/V) POLYETHYLENE GLYCOL 4000, 20 REMARK 280 % (V/V) GLYCEROL, 150 MM KCL., VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.45500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.51000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.62000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.51000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.45500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.62000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 94 REMARK 465 SER A 95 REMARK 465 GLY A 293 REMARK 465 GLU A 294 REMARK 465 PRO A 295 REMARK 465 HIS A 296 REMARK 465 HIS A 297 REMARK 465 GLU A 298 REMARK 465 LEU A 299 REMARK 465 PRO A 300 REMARK 465 PRO A 301 REMARK 465 GLY A 302 REMARK 465 SER A 303 REMARK 465 THR A 304 REMARK 465 LYS A 305 REMARK 465 ARG A 306 REMARK 465 ALA A 307 REMARK 465 LEU A 308 REMARK 465 PRO A 309 REMARK 465 ASN A 310 REMARK 465 ASN A 311 REMARK 465 THR A 312 REMARK 465 LYS B 291 REMARK 465 LYS B 292 REMARK 465 GLY B 293 REMARK 465 GLU B 294 REMARK 465 PRO B 295 REMARK 465 HIS B 296 REMARK 465 HIS B 297 REMARK 465 GLU B 298 REMARK 465 LEU B 299 REMARK 465 PRO B 300 REMARK 465 PRO B 301 REMARK 465 GLY B 302 REMARK 465 SER B 303 REMARK 465 THR B 304 REMARK 465 LYS B 305 REMARK 465 ARG B 306 REMARK 465 ALA B 307 REMARK 465 LEU B 308 REMARK 465 PRO B 309 REMARK 465 ASN B 310 REMARK 465 ASN B 311 REMARK 465 THR B 312 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 188 -45.95 -130.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2108 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH A2179 DISTANCE = 6.15 ANGSTROMS REMARK 525 HOH B2061 DISTANCE = 5.92 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1300 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 176 SG REMARK 620 2 HIS A 179 ND1 106.3 REMARK 620 3 CYS A 238 SG 110.7 106.2 REMARK 620 4 CYS A 242 SG 111.9 105.5 115.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1300 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 176 SG REMARK 620 2 HIS B 179 ND1 103.0 REMARK 620 3 CYS B 238 SG 111.5 109.2 REMARK 620 4 CYS B 242 SG 111.3 106.7 114.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UFV A 1293 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1300 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5AOI RELATED DB: PDB REMARK 900 STRUCTURE OF THE P53 CANCER MUTANT Y220C IN COMPLEX WITH AN INDOLE- REMARK 900 BASED SMALL MOLECULE REMARK 900 RELATED ID: 5AOJ RELATED DB: PDB REMARK 900 STRUCTURE OF THE P53 CANCER MUTANT Y220C IN COMPLEX WITH 2-HYDROXY- REMARK 900 3,5-DIIODO-4-(1H-PYRROL-1-YL) BENZOIC ACID REMARK 900 RELATED ID: 5AOK RELATED DB: PDB REMARK 900 STRUCTURE OF THE P53 CANCER MUTANT Y220C WITH BOUND SMALL MOLECULE REMARK 900 PHIKAN7099 REMARK 900 RELATED ID: 5AOM RELATED DB: PDB REMARK 900 STRUCTURE OF THE P53 CANCER MUTANT Y220C WITH BOUND SMALL MOLECULE REMARK 900 PHIKAN883 DBREF 5AOL A 94 312 UNP P04637 P53_HUMAN 94 312 DBREF 5AOL B 94 312 UNP P04637 P53_HUMAN 94 312 SEQADV 5AOL LEU A 133 UNP P04637 MET 133 ENGINEERED MUTATION SEQADV 5AOL ALA A 203 UNP P04637 VAL 203 ENGINEERED MUTATION SEQADV 5AOL CYS A 220 UNP P04637 TYR 220 ENGINEERED MUTATION SEQADV 5AOL TYR A 239 UNP P04637 ASN 239 ENGINEERED MUTATION SEQADV 5AOL ASP A 268 UNP P04637 ASN 268 ENGINEERED MUTATION SEQADV 5AOL LEU B 133 UNP P04637 MET 133 ENGINEERED MUTATION SEQADV 5AOL ALA B 203 UNP P04637 VAL 203 ENGINEERED MUTATION SEQADV 5AOL CYS B 220 UNP P04637 TYR 220 ENGINEERED MUTATION SEQADV 5AOL TYR B 239 UNP P04637 ASN 239 ENGINEERED MUTATION SEQADV 5AOL ASP B 268 UNP P04637 ASN 268 ENGINEERED MUTATION SEQRES 1 A 219 SER SER SER VAL PRO SER GLN LYS THR TYR GLN GLY SER SEQRES 2 A 219 TYR GLY PHE ARG LEU GLY PHE LEU HIS SER GLY THR ALA SEQRES 3 A 219 LYS SER VAL THR CYS THR TYR SER PRO ALA LEU ASN LYS SEQRES 4 A 219 LEU PHE CYS GLN LEU ALA LYS THR CYS PRO VAL GLN LEU SEQRES 5 A 219 TRP VAL ASP SER THR PRO PRO PRO GLY THR ARG VAL ARG SEQRES 6 A 219 ALA MET ALA ILE TYR LYS GLN SER GLN HIS MET THR GLU SEQRES 7 A 219 VAL VAL ARG ARG CYS PRO HIS HIS GLU ARG CYS SER ASP SEQRES 8 A 219 SER ASP GLY LEU ALA PRO PRO GLN HIS LEU ILE ARG VAL SEQRES 9 A 219 GLU GLY ASN LEU ARG ALA GLU TYR LEU ASP ASP ARG ASN SEQRES 10 A 219 THR PHE ARG HIS SER VAL VAL VAL PRO CYS GLU PRO PRO SEQRES 11 A 219 GLU VAL GLY SER ASP CYS THR THR ILE HIS TYR ASN TYR SEQRES 12 A 219 MET CYS TYR SER SER CYS MET GLY GLY MET ASN ARG ARG SEQRES 13 A 219 PRO ILE LEU THR ILE ILE THR LEU GLU ASP SER SER GLY SEQRES 14 A 219 ASN LEU LEU GLY ARG ASP SER PHE GLU VAL ARG VAL CYS SEQRES 15 A 219 ALA CYS PRO GLY ARG ASP ARG ARG THR GLU GLU GLU ASN SEQRES 16 A 219 LEU ARG LYS LYS GLY GLU PRO HIS HIS GLU LEU PRO PRO SEQRES 17 A 219 GLY SER THR LYS ARG ALA LEU PRO ASN ASN THR SEQRES 1 B 219 SER SER SER VAL PRO SER GLN LYS THR TYR GLN GLY SER SEQRES 2 B 219 TYR GLY PHE ARG LEU GLY PHE LEU HIS SER GLY THR ALA SEQRES 3 B 219 LYS SER VAL THR CYS THR TYR SER PRO ALA LEU ASN LYS SEQRES 4 B 219 LEU PHE CYS GLN LEU ALA LYS THR CYS PRO VAL GLN LEU SEQRES 5 B 219 TRP VAL ASP SER THR PRO PRO PRO GLY THR ARG VAL ARG SEQRES 6 B 219 ALA MET ALA ILE TYR LYS GLN SER GLN HIS MET THR GLU SEQRES 7 B 219 VAL VAL ARG ARG CYS PRO HIS HIS GLU ARG CYS SER ASP SEQRES 8 B 219 SER ASP GLY LEU ALA PRO PRO GLN HIS LEU ILE ARG VAL SEQRES 9 B 219 GLU GLY ASN LEU ARG ALA GLU TYR LEU ASP ASP ARG ASN SEQRES 10 B 219 THR PHE ARG HIS SER VAL VAL VAL PRO CYS GLU PRO PRO SEQRES 11 B 219 GLU VAL GLY SER ASP CYS THR THR ILE HIS TYR ASN TYR SEQRES 12 B 219 MET CYS TYR SER SER CYS MET GLY GLY MET ASN ARG ARG SEQRES 13 B 219 PRO ILE LEU THR ILE ILE THR LEU GLU ASP SER SER GLY SEQRES 14 B 219 ASN LEU LEU GLY ARG ASP SER PHE GLU VAL ARG VAL CYS SEQRES 15 B 219 ALA CYS PRO GLY ARG ASP ARG ARG THR GLU GLU GLU ASN SEQRES 16 B 219 LEU ARG LYS LYS GLY GLU PRO HIS HIS GLU LEU PRO PRO SEQRES 17 B 219 GLY SER THR LYS ARG ALA LEU PRO ASN ASN THR HET UFV A1293 13 HET ZN A1300 1 HET ZN B1300 1 HETNAM UFV 3-BROMO-5-(TRIFLUOROMETHYL)BENZENE-1,2-DIAMINE HETNAM ZN ZINC ION FORMUL 3 UFV C7 H6 BR F3 N2 FORMUL 4 ZN 2(ZN 2+) FORMUL 6 HOH *554(H2 O) HELIX 1 1 GLN A 165 MET A 169 5 5 HELIX 2 2 HIS A 178 CYS A 182 5 5 HELIX 3 3 CYS A 277 LYS A 292 1 16 HELIX 4 4 HIS B 178 CYS B 182 5 5 HELIX 5 5 CYS B 277 ARG B 290 1 14 SHEET 1 AA 4 ARG A 110 GLY A 112 0 SHEET 2 AA 4 CYS A 141 TRP A 146 -1 O GLN A 144 N GLY A 112 SHEET 3 AA 4 THR A 230 TYR A 236 -1 O THR A 230 N LEU A 145 SHEET 4 AA 4 ILE A 195 VAL A 197 -1 O ARG A 196 N ASN A 235 SHEET 1 AB 7 CYS A 124 SER A 127 0 SHEET 2 AB 7 LYS A 132 CYS A 135 -1 O LYS A 132 N SER A 127 SHEET 3 AB 7 LEU A 264 VAL A 274 1 O GLU A 271 N LEU A 133 SHEET 4 AB 7 ILE A 251 GLU A 258 -1 O ILE A 251 N VAL A 272 SHEET 5 AB 7 ARG A 156 TYR A 163 -1 O ARG A 156 N GLU A 258 SHEET 6 AB 7 HIS A 214 PRO A 219 -1 O VAL A 216 N ALA A 159 SHEET 7 AB 7 GLU A 204 ASP A 207 -1 O GLU A 204 N VAL A 217 SHEET 1 BA 4 ARG B 110 GLY B 112 0 SHEET 2 BA 4 CYS B 141 TRP B 146 -1 O GLN B 144 N GLY B 112 SHEET 3 BA 4 THR B 230 TYR B 236 -1 O THR B 230 N LEU B 145 SHEET 4 BA 4 ILE B 195 VAL B 197 -1 O ARG B 196 N ASN B 235 SHEET 1 BB 7 CYS B 124 SER B 127 0 SHEET 2 BB 7 LYS B 132 CYS B 135 -1 O LYS B 132 N SER B 127 SHEET 3 BB 7 LEU B 264 VAL B 274 1 O GLU B 271 N LEU B 133 SHEET 4 BB 7 ILE B 251 GLU B 258 -1 O ILE B 251 N VAL B 272 SHEET 5 BB 7 ARG B 156 TYR B 163 -1 O ARG B 156 N GLU B 258 SHEET 6 BB 7 HIS B 214 PRO B 219 -1 O VAL B 216 N ALA B 159 SHEET 7 BB 7 GLU B 204 ASP B 207 -1 O GLU B 204 N VAL B 217 LINK SG CYS A 176 ZN ZN A1300 1555 1555 2.32 LINK ND1 HIS A 179 ZN ZN A1300 1555 1555 2.00 LINK SG CYS A 238 ZN ZN A1300 1555 1555 2.31 LINK SG CYS A 242 ZN ZN A1300 1555 1555 2.31 LINK SG CYS B 176 ZN ZN B1300 1555 1555 2.33 LINK ND1 HIS B 179 ZN ZN B1300 1555 1555 2.03 LINK SG CYS B 238 ZN ZN B1300 1555 1555 2.32 LINK SG CYS B 242 ZN ZN B1300 1555 1555 2.31 SITE 1 AC1 4 CYS A 176 HIS A 179 CYS A 238 CYS A 242 SITE 1 AC2 7 PHE A 109 LEU A 145 VAL A 147 CYS A 220 SITE 2 AC2 7 GLU A 221 THR A 230 LEU A 257 SITE 1 AC3 4 CYS B 176 HIS B 179 CYS B 238 CYS B 242 CRYST1 64.910 71.240 105.020 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015406 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014037 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009522 0.00000