PDB Short entry for 5AP9 HEADER HYDROLASE 15-SEP-15 5AP9 TITLE CONTROLLED LID-OPENING IN THERMOMYCES LANUGINOSUS LIPASE - A SWITCH TITLE 2 FOR ACTIVITY AND BINDING COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIPASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 23-291; COMPND 5 SYNONYM: TRIACYLGLYCEROL LIPASE; COMPND 6 EC: 3.1.1.3; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOMYCES LANUGINOSUS; SOURCE 3 ORGANISM_TAXID: 5541; SOURCE 4 EXPRESSION_SYSTEM: ASPERGILLUS ORYZAE; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 5062 KEYWDS HYDROLASE, THERMOMYCES LANUGINOSUS LIPASE, ENGINEERED DISULFIDE KEYWDS 2 BRIDGE, CONTROLLED BINDING, DUAL SWITCH, CONTROLLED ACTIVITY EXPDTA X-RAY DIFFRACTION AUTHOR J.SKJOLD-JOERGENSEN,J.VIND,O.V.MOROZ,E.V.BLAGOVA,V.K.BHATIA, AUTHOR 2 A.SVENDSEN,K.S.WILSON,M.J.BJERRUM REVDAT 6 10-JAN-24 5AP9 1 REMARK HETSYN REVDAT 5 29-JUL-20 5AP9 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE REVDAT 4 08-MAY-19 5AP9 1 REMARK LINK REVDAT 3 22-MAR-17 5AP9 1 JRNL REVDAT 2 08-MAR-17 5AP9 1 JRNL REVDAT 1 28-SEP-16 5AP9 0 JRNL AUTH J.SKJOLD-JRGENSEN,J.VIND,O.V.MOROZ,E.BLAGOVA,V.K.BHATIA, JRNL AUTH 2 A.SVENDSEN,K.S.WILSON,M.J.BJERRUM JRNL TITL CONTROLLED LID-OPENING IN THERMOMYCES LANUGINOSUS LIPASE- AN JRNL TITL 2 ENGINEERED SWITCH FOR STUDYING LIPASE FUNCTION. JRNL REF BIOCHIM. BIOPHYS. ACTA V.1865 20 2017 JRNL REFN ISSN 0006-3002 JRNL PMID 27693248 JRNL DOI 10.1016/J.BBAPAP.2016.09.016 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0131 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.02 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 59391 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 3061 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4288 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.09 REMARK 3 BIN R VALUE (WORKING SET) : 0.2310 REMARK 3 BIN FREE R VALUE SET COUNT : 220 REMARK 3 BIN FREE R VALUE : 0.2510 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4061 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 38 REMARK 3 SOLVENT ATOMS : 243 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.40000 REMARK 3 B22 (A**2) : 0.40000 REMARK 3 B33 (A**2) : -0.80000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.102 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.098 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.067 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.243 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4263 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3799 ; 0.008 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5828 ; 1.706 ; 1.938 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8714 ; 1.497 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 548 ; 6.256 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 205 ;35.360 ;24.049 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 598 ;12.325 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;15.232 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 636 ; 0.106 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5034 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1048 ; 0.007 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2164 ; 1.125 ; 1.896 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2163 ; 1.125 ; 1.896 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2717 ; 1.769 ; 2.839 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2098 ; 1.650 ; 2.085 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 269 REMARK 3 ORIGIN FOR THE GROUP (A): 27.0091 -37.8392 8.3953 REMARK 3 T TENSOR REMARK 3 T11: 0.1374 T22: 0.0878 REMARK 3 T33: 0.1045 T12: -0.0346 REMARK 3 T13: -0.0423 T23: 0.0753 REMARK 3 L TENSOR REMARK 3 L11: 2.5193 L22: 1.3971 REMARK 3 L33: 4.3387 L12: -0.1819 REMARK 3 L13: 1.4203 L23: -1.1585 REMARK 3 S TENSOR REMARK 3 S11: -0.2176 S12: 0.2751 S13: 0.3080 REMARK 3 S21: 0.0361 S22: -0.1011 S23: -0.1907 REMARK 3 S31: -0.3247 S32: 0.5050 S33: 0.3187 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 300 REMARK 3 ORIGIN FOR THE GROUP (A): 23.2111 -2.1499 -8.9800 REMARK 3 T TENSOR REMARK 3 T11: 0.0967 T22: 0.0173 REMARK 3 T33: 0.0280 T12: 0.0163 REMARK 3 T13: -0.0347 T23: -0.0092 REMARK 3 L TENSOR REMARK 3 L11: 2.8609 L22: 1.2943 REMARK 3 L33: 1.3782 L12: 0.9299 REMARK 3 L13: 0.2106 L23: 0.1454 REMARK 3 S TENSOR REMARK 3 S11: 0.0748 S12: -0.0191 S13: -0.1350 REMARK 3 S21: 0.1165 S22: -0.0405 S23: -0.1390 REMARK 3 S31: 0.0015 S32: -0.0269 S33: -0.0343 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. SUBUNIT A IS BETTER ORDERED, THAN SUBUNIT B. REMARK 3 DESCRIPTION IN THE PAPER WILL REFER TO SUBUNIT A REMARK 4 REMARK 4 5AP9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1290065054. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59391 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.020 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 13.10 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : 12.80 REMARK 200 R MERGE FOR SHELL (I) : 0.87000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1DT3 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 % PEG400, 0.2 M LITHIUM SULFATE, REMARK 280 0.1 M NA-ACETATE PH 4.5, SITTING DROP, VAPOUR DIFFUSION, VAPOR REMARK 280 DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 80.22750 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 45.23900 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 45.23900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 120.34125 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 45.23900 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 45.23900 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 40.11375 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 45.23900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 45.23900 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 120.34125 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 45.23900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 45.23900 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 40.11375 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 80.22750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2047 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 23 REMARK 465 LYS B 24 REMARK 465 ASN B 25 REMARK 465 ASN B 26 REMARK 465 ASP B 27 REMARK 465 ALA B 28 REMARK 465 PRO B 29 REMARK 465 ALA B 30 REMARK 465 GLY B 31 REMARK 465 THR B 32 REMARK 465 ASN B 33 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 74 CE NZ REMARK 480 ARG A 84 CG CD NE CZ NH1 NH2 REMARK 480 LYS A 98 CD CE NZ REMARK 480 ARG A 118 CD NE CZ NH1 NH2 REMARK 480 LYS A 223 CE NZ REMARK 480 LEU A 269 CG CD1 CD2 REMARK 480 LYS B 46 CD CE NZ REMARK 480 ASN B 71 CG OD1 ND2 REMARK 480 LYS B 74 CG CD CE NZ REMARK 480 ARG B 84 CG CD NE CZ NH1 NH2 REMARK 480 ASN B 94 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 98 CG LYS A 98 CD -0.286 REMARK 500 ARG A 118 CG ARG A 118 CD 0.165 REMARK 500 LYS A 223 CD LYS A 223 CE -0.181 REMARK 500 LYS B 74 CB LYS B 74 CG -0.236 REMARK 500 ARG B 84 CB ARG B 84 CG 0.311 REMARK 500 ASN B 94 CB ASN B 94 CG -0.401 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 74 CG - CD - CE ANGL. DEV. = 18.6 DEGREES REMARK 500 ARG A 81 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 LYS A 98 CB - CG - CD ANGL. DEV. = 28.5 DEGREES REMARK 500 ASP A 167 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG A 209 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 LYS B 74 CA - CB - CG ANGL. DEV. = 22.5 DEGREES REMARK 500 CYS B 86 N - CA - CB ANGL. DEV. = -14.8 DEGREES REMARK 500 ASN B 94 CA - CB - CG ANGL. DEV. = 26.4 DEGREES REMARK 500 ASN B 94 CB - CG - OD1 ANGL. DEV. = -15.2 DEGREES REMARK 500 ASP B 167 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG B 175 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG B 179 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG B 179 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 ARG B 209 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 41 54.43 -148.66 REMARK 500 SER A 146 -131.39 60.04 REMARK 500 THR A 199 -114.85 34.62 REMARK 500 PHE A 262 -46.33 75.92 REMARK 500 CYS B 41 54.27 -150.20 REMARK 500 ASN B 92 -21.01 -140.45 REMARK 500 ASN B 94 37.26 -97.99 REMARK 500 SER B 146 -133.26 60.14 REMARK 500 THR B 199 -118.77 35.23 REMARK 500 THR B 199 -118.74 35.23 REMARK 500 PHE B 262 -47.27 77.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 MUTATIONS I86C, I255C DBREF 5AP9 A 1 269 UNP O59952 LIP_THELA 23 291 DBREF 5AP9 B 1 269 UNP O59952 LIP_THELA 23 291 SEQADV 5AP9 CYS A 86 UNP O59952 ILE 108 ENGINEERED MUTATION SEQADV 5AP9 CYS A 255 UNP O59952 ILE 277 ENGINEERED MUTATION SEQADV 5AP9 CYS B 86 UNP O59952 ILE 108 ENGINEERED MUTATION SEQADV 5AP9 CYS B 255 UNP O59952 ILE 277 ENGINEERED MUTATION SEQRES 1 A 269 GLU VAL SER GLN ASP LEU PHE ASN GLN PHE ASN LEU PHE SEQRES 2 A 269 ALA GLN TYR SER ALA ALA ALA TYR CYS GLY LYS ASN ASN SEQRES 3 A 269 ASP ALA PRO ALA GLY THR ASN ILE THR CYS THR GLY ASN SEQRES 4 A 269 ALA CYS PRO GLU VAL GLU LYS ALA ASP ALA THR PHE LEU SEQRES 5 A 269 TYR SER PHE GLU ASP SER GLY VAL GLY ASP VAL THR GLY SEQRES 6 A 269 PHE LEU ALA LEU ASP ASN THR ASN LYS LEU ILE VAL LEU SEQRES 7 A 269 SER PHE ARG GLY SER ARG SER CYS GLU ASN TRP ILE GLY SEQRES 8 A 269 ASN LEU ASN PHE ASP LEU LYS GLU ILE ASN ASP ILE CYS SEQRES 9 A 269 SER GLY CYS ARG GLY HIS ASP GLY PHE THR SER SER TRP SEQRES 10 A 269 ARG SER VAL ALA ASP THR LEU ARG GLN LYS VAL GLU ASP SEQRES 11 A 269 ALA VAL ARG GLU HIS PRO ASP TYR ARG VAL VAL PHE THR SEQRES 12 A 269 GLY HIS SER LEU GLY GLY ALA LEU ALA THR VAL ALA GLY SEQRES 13 A 269 ALA ASP LEU ARG GLY ASN GLY TYR ASP ILE ASP VAL PHE SEQRES 14 A 269 SER TYR GLY ALA PRO ARG VAL GLY ASN ARG ALA PHE ALA SEQRES 15 A 269 GLU PHE LEU THR VAL GLN THR GLY GLY THR LEU TYR ARG SEQRES 16 A 269 ILE THR HIS THR ASN ASP ILE VAL PRO ARG LEU PRO PRO SEQRES 17 A 269 ARG GLU PHE GLY TYR SER HIS SER SER PRO GLU TYR TRP SEQRES 18 A 269 ILE LYS SER GLY THR LEU VAL PRO VAL THR ARG ASN ASP SEQRES 19 A 269 ILE VAL LYS ILE GLU GLY ILE ASP ALA THR GLY GLY ASN SEQRES 20 A 269 ASN GLN PRO ASN ILE PRO ASP CYS PRO ALA HIS LEU TRP SEQRES 21 A 269 TYR PHE GLY LEU ILE GLY THR CYS LEU SEQRES 1 B 269 GLU VAL SER GLN ASP LEU PHE ASN GLN PHE ASN LEU PHE SEQRES 2 B 269 ALA GLN TYR SER ALA ALA ALA TYR CYS GLY LYS ASN ASN SEQRES 3 B 269 ASP ALA PRO ALA GLY THR ASN ILE THR CYS THR GLY ASN SEQRES 4 B 269 ALA CYS PRO GLU VAL GLU LYS ALA ASP ALA THR PHE LEU SEQRES 5 B 269 TYR SER PHE GLU ASP SER GLY VAL GLY ASP VAL THR GLY SEQRES 6 B 269 PHE LEU ALA LEU ASP ASN THR ASN LYS LEU ILE VAL LEU SEQRES 7 B 269 SER PHE ARG GLY SER ARG SER CYS GLU ASN TRP ILE GLY SEQRES 8 B 269 ASN LEU ASN PHE ASP LEU LYS GLU ILE ASN ASP ILE CYS SEQRES 9 B 269 SER GLY CYS ARG GLY HIS ASP GLY PHE THR SER SER TRP SEQRES 10 B 269 ARG SER VAL ALA ASP THR LEU ARG GLN LYS VAL GLU ASP SEQRES 11 B 269 ALA VAL ARG GLU HIS PRO ASP TYR ARG VAL VAL PHE THR SEQRES 12 B 269 GLY HIS SER LEU GLY GLY ALA LEU ALA THR VAL ALA GLY SEQRES 13 B 269 ALA ASP LEU ARG GLY ASN GLY TYR ASP ILE ASP VAL PHE SEQRES 14 B 269 SER TYR GLY ALA PRO ARG VAL GLY ASN ARG ALA PHE ALA SEQRES 15 B 269 GLU PHE LEU THR VAL GLN THR GLY GLY THR LEU TYR ARG SEQRES 16 B 269 ILE THR HIS THR ASN ASP ILE VAL PRO ARG LEU PRO PRO SEQRES 17 B 269 ARG GLU PHE GLY TYR SER HIS SER SER PRO GLU TYR TRP SEQRES 18 B 269 ILE LYS SER GLY THR LEU VAL PRO VAL THR ARG ASN ASP SEQRES 19 B 269 ILE VAL LYS ILE GLU GLY ILE ASP ALA THR GLY GLY ASN SEQRES 20 B 269 ASN GLN PRO ASN ILE PRO ASP CYS PRO ALA HIS LEU TRP SEQRES 21 B 269 TYR PHE GLY LEU ILE GLY THR CYS LEU MODRES 5AP9 ASN A 33 ASN GLYCOSYLATION SITE HET NAG A 300 14 HET GOL A 401 6 HET PEG A 601 7 HET GOL B 401 6 HET SO4 B 501 5 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM GOL GLYCEROL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM SO4 SULFATE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 NAG C8 H15 N O6 FORMUL 4 GOL 2(C3 H8 O3) FORMUL 5 PEG C4 H10 O3 FORMUL 7 SO4 O4 S 2- FORMUL 8 HOH *243(H2 O) HELIX 1 1 SER A 3 ALA A 20 1 18 HELIX 2 2 TYR A 21 ASN A 26 5 6 HELIX 3 3 CYS A 41 LYS A 46 1 6 HELIX 4 4 ASN A 88 LEU A 93 1 6 HELIX 5 5 ASP A 111 HIS A 135 1 25 HELIX 6 6 SER A 146 ARG A 160 1 15 HELIX 7 7 ASN A 178 GLN A 188 1 11 HELIX 8 8 ILE A 202 LEU A 206 5 5 HELIX 9 9 PRO A 208 GLY A 212 5 5 HELIX 10 10 THR A 231 ASN A 233 5 3 HELIX 11 11 CYS A 255 LEU A 259 5 5 HELIX 12 12 SER B 3 ALA B 20 1 18 HELIX 13 13 CYS B 36 ALA B 40 5 5 HELIX 14 14 CYS B 41 LYS B 46 1 6 HELIX 15 15 GLU B 87 ASN B 92 1 6 HELIX 16 16 ASP B 111 HIS B 135 1 25 HELIX 17 17 SER B 146 ARG B 160 1 15 HELIX 18 18 ASN B 178 GLN B 188 1 11 HELIX 19 19 ILE B 202 LEU B 206 5 5 HELIX 20 20 PRO B 208 GLY B 212 5 5 HELIX 21 21 THR B 231 ASN B 233 5 3 HELIX 22 22 CYS B 255 LEU B 259 5 5 SHEET 1 AA 8 ALA A 49 SER A 58 0 SHEET 2 AA 8 VAL A 63 ASP A 70 -1 O VAL A 63 N SER A 58 SHEET 3 AA 8 LEU A 75 PHE A 80 -1 O LEU A 75 N ASP A 70 SHEET 4 AA 8 ARG A 139 HIS A 145 1 O ARG A 139 N ILE A 76 SHEET 5 AA 8 ILE A 166 TYR A 171 1 O ASP A 167 N PHE A 142 SHEET 6 AA 8 LEU A 193 HIS A 198 1 O TYR A 194 N SER A 170 SHEET 7 AA 8 GLU A 219 ILE A 222 1 O TYR A 220 N THR A 197 SHEET 8 AA 8 ILE A 235 ILE A 238 -1 O VAL A 236 N TRP A 221 SHEET 1 AB 2 LEU A 97 GLU A 99 0 SHEET 2 AB 2 ARG A 108 HIS A 110 -1 O GLY A 109 N LYS A 98 SHEET 1 BA 8 ALA B 49 SER B 58 0 SHEET 2 BA 8 VAL B 63 ASP B 70 -1 O VAL B 63 N SER B 58 SHEET 3 BA 8 LEU B 75 PHE B 80 -1 O LEU B 75 N ASP B 70 SHEET 4 BA 8 ARG B 139 HIS B 145 1 O ARG B 139 N ILE B 76 SHEET 5 BA 8 ILE B 166 TYR B 171 1 O ASP B 167 N PHE B 142 SHEET 6 BA 8 LEU B 193 HIS B 198 1 O TYR B 194 N SER B 170 SHEET 7 BA 8 GLU B 219 ILE B 222 1 O TYR B 220 N THR B 197 SHEET 8 BA 8 ILE B 235 ILE B 238 -1 O VAL B 236 N TRP B 221 SHEET 1 BB 2 LEU B 97 GLU B 99 0 SHEET 2 BB 2 ARG B 108 HIS B 110 -1 O GLY B 109 N LYS B 98 SSBOND 1 CYS A 22 CYS A 268 1555 1555 2.06 SSBOND 2 CYS A 36 CYS A 41 1555 1555 2.05 SSBOND 3 CYS A 86 CYS A 255 1555 1555 2.03 SSBOND 4 CYS A 104 CYS A 107 1555 1555 2.09 SSBOND 5 CYS B 22 CYS B 268 1555 1555 2.03 SSBOND 6 CYS B 36 CYS B 41 1555 1555 2.06 SSBOND 7 CYS B 86 CYS B 255 1555 1555 2.01 SSBOND 8 CYS B 104 CYS B 107 1555 1555 2.10 LINK ND2 ASN A 33 C1 NAG A 300 1555 1555 1.44 CISPEP 1 LEU A 206 PRO A 207 0 -21.95 CISPEP 2 SER A 217 PRO A 218 0 -1.09 CISPEP 3 LEU B 206 PRO B 207 0 -18.60 CISPEP 4 SER B 217 PRO B 218 0 4.34 CRYST1 90.478 90.478 160.455 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011052 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011052 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006232 0.00000